Pregenerated sensors for LINC01474 (Homo sapiens)
Ensembl gene IDs: ENSG00000236849Ensembl transcript IDs: ENST00000423171.6, ENST00000449235.5, ENST00000453787.2, ENST00000653947.1, ENST00000654093.1, ENST00000656141.1, ENST00000658474.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTCAAGGGGCCACATCTGGTAAGTGGCTTCTTGCTGATGAGACTCTaGAGAGTCCCATGGTGGCACAGGACCTCACATGGTGAAGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: VKGPHLVSGFLLMRL*RVPWWHRTSHGEEG Trigger: ACCCTCTTCACCATGTGAGGTCCTGTGCCACCATGGGACTCTGCAGAGTCTCATCAGCAAGAAGCCACTTACCAGATGTGGCCCCTTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658474.1 |
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| CDS TCA 90 bp | CATGGCTGGGGAAGCCTCAGGAAACTTACAATCATGGCAGAAGGGTaGAGGGGAAGCACGCATATCTTCACATGGTGGCCGGAGAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: HGWGSLRKLTIMAEG*RGSTHIFTWWPERE Trigger: CTCTCTCTCCGGCCACCATGTGAAGATATGCGTGCTTCCCCTTCACCCTTCTGCCATGATTGTAAGTTTCCTGAGGCTTCCCCAGCCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000423171.6 ENST00000658474.1 |
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| CDS CCA 90 bp | CTGGTAAGTGGCTTCTTGCTGATGAGACTCTGCAGAGTCCCATGGTaGCACAGGACCTCACATGGTGAAGAGGGTGAGTGTGCTAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: LVSGFLLMRLCRVPW*HRTSHGEEGECASS Trigger: TGAGCTAGCACACTCACCCTCTTCACCATGTGAGGTCCTGTGCCACCATGGGACTCTGCAGAGTCTCATCAGCAAGAAGCCACTTACCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658474.1 |
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| CDS GCA 90 bp | GTCAATGTGCCCCCGTCCTCTGGCTATAACTTAGGACACTTCTGTTaGAAGGAATGGAGACTCATTCCAGCTGGCAGGAACAGGAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: VNVPPSSGYNLGHFC*KEWRLIPAGRNRSC Trigger: GCAGCTCCTGTTCCTGCCAGCTGGAATGAGTCTCCATTCCTTGCAACAGAAGTGTCCTAAGTTATAGCCAGAGGACGGGGGCACATTGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000449235.5 ENST00000656141.1 |
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| CDS CCA 90 bp | TGTACAGGAGGCATGGCTGGGGAAGCCTCAGGAAACTTACAATCATaGCAGAAGGGTGAAGGGGAAGCACGCATATCTTCACATGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: CTGGMAGEASGNLQS*QKGEGEARISSHGG Trigger: GCCACCATGTGAAGATATGCGTGCTTCCCCTTCACCCTTCTGCCATGATTGTAAGTTTCCTGAGGCTTCCCCAGCCATGCCTCCTGTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000423171.6 ENST00000658474.1 |
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| CDS CCA 90 bp | TTTTCTCTCCCAGGTCCTGAAGTTCCACAGGCTGTACAGGAGGCATaGCTGGGGAAGCCTCAGGAAACTTACAATCATGGCAGAAGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: FSLPGPEVPQAVQEA*LGKPQETYNHGRRV Trigger: CACCCTTCTGCCATGATTGTAAGTTTCCTGAGGCTTCCCCAGCCATGCCTCCTGTACAGCCTGTGGAACTTCAGGACCTGGGAGAGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000449235.5 ENST00000658474.1 |
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| CDS GCA 90 bp | GTCAATGTGCCCCCGTCCTCTGGCTATAACTTAGGACACTTCTGTTaGAAGGAATGGAGACTCATTCCAGCAGGAACAGGAGCTGCTCTT | + |
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Preference number: 5 (lower is better) Translates to: VNVPPSSGYNLGHFC*KEWRLIPAGTGAAL Trigger: AAGAGCAGCTCCTGTTCCTGCTGGAATGAGTCTCCATTCCTTGCAACAGAAGTGTCCTAAGTTATAGCCAGAGGACGGGGGCACATTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000423171.6 ENST00000453787.2 ENST00000653947.1 ENST00000654093.1 ENST00000658474.1 |
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| CDS GCA 90 bp | TGTTGCAAGGAATGGAGACTCATTCCAGCTGGCAGGAACAGGAGCTaGTCTTTGCTTCTCTTAAGGAACATATGGTCACTCTTATTTCTC | + |
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Preference number: 5 (lower is better) Translates to: CCKEWRLIPAGRNRS*SLLLLRNIWSLLFL Trigger: GAGAAATAAGAGTGACCATATGTTCCTTAAGAGAAGCAAAGAGCAGCTCCTGTTCCTGCCAGCTGGAATGAGTCTCCATTCCTTGCAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000449235.5 ENST00000656141.1 |
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| CDS GCA 90 bp | CTTCTGTTGCAAGGAATGGAGACTCATTCCAGCAGGAACAGGAGCTaGTCTTTGCTTCTCTTAAGGAACATATGGTCACTCTTATTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LLLQGMETHSSRNRS*SLLLLRNIWSLLFL Trigger: GAGAAATAAGAGTGACCATATGTTCCTTAAGAGAAGCAAAGAGCAGCTCCTGTTCCTGCTGGAATGAGTCTCCATTCCTTGCAACAGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000423171.6 ENST00000453787.2 ENST00000653947.1 ENST00000654093.1 ENST00000658474.1 |
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| CDS CCA 90 bp | GAAGGAAAGATAAACAACACTGCTTCTTTCTTCAGATGTTCTTGCTaGAATGGTACCTTGTTATTATCATATCCGCTTTATGTTTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: EGKINNTASFFRCSC*NGTLLLSYPLYVLS Trigger: TGACAAAACATAAAGCGGATATGATAATAACAAGGTACCATTCCAGCAAGAACATCTGAAGAAAGAAGCAGTGTTGTTTATCTTTCCTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000423171.6 ENST00000449235.5 ENST00000453787.2 ENST00000653947.1 ENST00000654093.1 ENST00000656141.1 ENST00000658474.1 |
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| CDS CAA 90 bp | GCTGAGAAGCCCAAGGTCAAGGGGCCACATCTGGTAAGTGGCTTCTaGCTGATGAGACTCTGCAGAGTCCCATGGTGGCACAGGACCTCA | + |
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Preference number: 6 (lower is better) Translates to: AEKPKVKGPHLVSGF*LMRLCRVPWWHRTS Trigger: TGAGGTCCTGTGCCACCATGGGACTCTGCAGAGTCTCATCAGCAAGAAGCCACTTACCAGATGTGGCCCCTTGACCTTGGGCTTCTCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658474.1 |
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| CDS CAA 72 bp | CCCAAGGTCAAGGGGCCACATCTGGTAAGTGGCTTCTaGCTGATGAGACTCTGCAGAGTCCCATGGTGGCAC | + |
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Preference number: 6 (lower is better) Translates to: PKVKGPHLVSGF*LMRLCRVPWWH Trigger: GTGCCACCATGGGACTCTGCAGAGTCTCATCAGCAAGAAGCCACTTACCAGATGTGGCCCCTTGACCTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658474.1 |
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| CDS CCA 72 bp | GGCTTCTTGCTGATGAGACTCTGCAGAGTCCCATGGTaGCACAGGACCTCACATGGTGAAGAGGGTGAGTGT | + |
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Preference number: 6 (lower is better) Translates to: GFLLMRLCRVPW*HRTSHGEEGEC Trigger: ACACTCACCCTCTTCACCATGTGAGGTCCTGTGCCACCATGGGACTCTGCAGAGTCTCATCAGCAAGAAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658474.1 |
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| CDS GCA 72 bp | CCACATCTGGTAAGTGGCTTCTTGCTGATGAGACTCTaGAGAGTCCCATGGTGGCACAGGACCTCACATGGT | + |
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Preference number: 6 (lower is better) Translates to: PHLVSGFLLMRL*RVPWWHRTSHG Trigger: ACCATGTGAGGTCCTGTGCCACCATGGGACTCTGCAGAGTCTCATCAGCAAGAAGCCACTTACCAGATGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658474.1 |
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| CDS TCA 72 bp | GGAAGCCTCAGGAAACTTACAATCATGGCAGAAGGGTaGAGGGGAAGCACGCATATCTTCACATGGTGGCCG | + |
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Preference number: 6 (lower is better) Translates to: GSLRKLTIMAEG*RGSTHIFTWWP Trigger: CGGCCACCATGTGAAGATATGCGTGCTTCCCCTTCACCCTTCTGCCATGATTGTAAGTTTCCTGAGGCTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000423171.6 ENST00000658474.1 |
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| CDS TCA 72 bp | TTTTCTCTCCCAGGTCCTGAAATCATGGCAGAAGGGTaGAGGGGAAGCACGCATATCTTCACATGGTGGCCG | + |
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Preference number: 6 (lower is better) Translates to: FSLPGPEIMAEG*RGSTHIFTWWP Trigger: CGGCCACCATGTGAAGATATGCGTGCTTCCCCTTCACCCTTCTGCCATGATTTCAGGACCTGGGAGAGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000654093.1 ENST00000656141.1 |
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| CDS GCA 72 bp | CCCCCGTCCTCTGGCTATAACTTAGGACACTTCTGTTaGAAGGAATGGAGACTCATTCCAGCTGGCAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: PPSSGYNLGHFC*KEWRLIPAGRN Trigger: GTTCCTGCCAGCTGGAATGAGTCTCCATTCCTTGCAACAGAAGTGTCCTAAGTTATAGCCAGAGGACGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000449235.5 ENST00000656141.1 |
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| CDS GCA 72 bp | CCCCCGTCCTCTGGCTATAACTTAGGACACTTCTGTTaGAAGGAATGGAGACTCATTCCAGCAGGAACAGGA | + |
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Preference number: 6 (lower is better) Translates to: PPSSGYNLGHFC*KEWRLIPAGTG Trigger: TCCTGTTCCTGCTGGAATGAGTCTCCATTCCTTGCAACAGAAGTGTCCTAAGTTATAGCCAGAGGACGGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000423171.6 ENST00000453787.2 ENST00000653947.1 ENST00000654093.1 ENST00000658474.1 |
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| CDS CCA 72 bp | ACACTTCTGTTGCAAGGAATGGAGACTCATTCCAGCTaGCAGGAACAGGAGCTGCTCTTTGCTTCTCTTAAG | + |
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Preference number: 6 (lower is better) Translates to: TLLLQGMETHSS*QEQELLFASLK Trigger: CTTAAGAGAAGCAAAGAGCAGCTCCTGTTCCTGCCAGCTGGAATGAGTCTCCATTCCTTGCAACAGAAGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000449235.5 ENST00000656141.1 |
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| CDS CAA 72 bp | GGCCTGTCAGAGGTCAGACATACAGTCCTGTTCTTTTaGATCCTTCATATGTACCAGGCTAATTATGAATTA | + |
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Preference number: 6 (lower is better) Translates to: GLSEVRHTVLFF*ILHMYQANYEL Trigger: TAATTCATAATTAGCCTGGTACATATGAAGGATCAAAAAGAACAGGACTGTATGTCTGACCTCTGACAGGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000423171.6 ENST00000449235.5 ENST00000453787.2 ENST00000653947.1 ENST00000654093.1 ENST00000656141.1 ENST00000658474.1 |
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