RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01460 (Homo sapiens)

Ensembl gene IDs: ENSG00000205334

Ensembl transcript IDs: ENST00000379677.2

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CAGCACCTCCCACAGCTGGCCAGACTGCTGCTTGGGGAACTGCCTTaGGCAAAGGGGCAGAGGGAGTTGGAATGGGCATCAGAACCCAGG +
Preference number: 5 (lower is better)
Translates to: QHLPQLARLLLGELP*AKGQRELEWASEPR
Trigger: CCTGGGTTCTGATGCCCATTCCAACTCCCTCTGCCCCTTTGCTCAAGGCAGTTCCCCAAGCAGCAGTCTGGCCAGCTGTGGGAGGTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 90 bp GGCAGAGGGAGTTGGAATGGGCATCAGAACCCAGGCTGCTGCCCCTaGTCCTTGAAAGGGCTTCAGAACACACTGCCCTATCCATCCCCA +
Preference number: 5 (lower is better)
Translates to: GRGSWNGHQNPGCCP*SLKGLQNTLPYPSP
Trigger: TGGGGATGGATAGGGCAGTGTGTTCTGAAGCCCTTTCAAGGAGCAGGGGCAGCAGCCTGGGTTCTGATGCCCATTCCAACTCCCTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 90 bp CAAAGGGGCAGAGGGAGTTGGAATGGGCATCAGAACCCAGGCTGCTaGCCCTGCTCCTTGAAAGGGCTTCAGAACACACTGCCCTATCCA +
Preference number: 5 (lower is better)
Translates to: QRGRGSWNGHQNPGC*PCSLKGLQNTLPYP
Trigger: TGGATAGGGCAGTGTGTTCTGAAGCCCTTTCAAGGAGCAGGGGCAGCAGCCTGGGTTCTGATGCCCATTCCAACTCCCTCTGCCCCTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 90 bp CTAATCTTGGAAGTGGTGAACAGCACCTCCCACAGCTGGCCAGACTaGTGCTTGGGGAACTGCCTTGAGCAAAGGGGCAGAGGGAGTTGG +
Preference number: 5 (lower is better)
Translates to: LILEVVNSTSHSWPD*CLGNCLEQRGRGSW
Trigger: CCAACTCCCTCTGCCCCTTTGCTCAAGGCAGTTCCCCAAGCAGCAGTCTGGCCAGCTGTGGGAGGTGCTGTTCACCACTTCCAAGATTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 90 bp ATCTTGGAAGTGGTGAACAGCACCTCCCACAGCTGGCCAGACTGCTaGTTGGGGAACTGCCTTGAGCAAAGGGGCAGAGGGAGTTGGAAT +
Preference number: 5 (lower is better)
Translates to: ILEVVNSTSHSWPDC*LGNCLEQRGRGSWN
Trigger: ATTCCAACTCCCTCTGCCCCTTTGCTCAAGGCAGTTCCCCAAGCAGCAGTCTGGCCAGCTGTGGGAGGTGCTGTTCACCACTTCCAAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 90 bp AGGTCTGAGCTAATCTTGGAAGTGGTGAACAGCACCTCCCACAGCTaGCCAGACTGCTGCTTGGGGAACTGCCTTGAGCAAAGGGGCAGA +
Preference number: 5 (lower is better)
Translates to: RSELILEVVNSTSHS*PDCCLGNCLEQRGR
Trigger: TCTGCCCCTTTGCTCAAGGCAGTTCCCCAAGCAGCAGTCTGGCCAGCTGTGGGAGGTGCTGTTCACCACTTCCAAGATTAGCTCAGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 90 bp GGCAGAATGGTCCAGGTGCTAGTCCTGACACCACCATCCCCAGGTTaGTCAGTTGAATCAGGCTGTAGCTTGAACTCAATGGGTAGGAGC +
Preference number: 5 (lower is better)
Translates to: GRMVQVLVLTPPSPG*SVESGCSLNSMGRS
Trigger: GCTCCTACCCATTGAGTTCAAGCTACAGCCTGATTCAACTGATCAACCTGGGGATGGTGGTGTCAGGACTAGCACCTGGACCATTCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 90 bp TTTACCAAGGTCTATCCAGGGCTTCCTCTTCACCACCCCAGGAAGTaGCTCACAACTAGCCCCTATTTCCCAGGATCCCAAGGACCAAGT +
Preference number: 5 (lower is better)
Translates to: FTKVYPGLPLHHPRK*LTTSPYFPGSQGPS
Trigger: ACTTGGTCCTTGGGATCCTGGGAAATAGGGGCTAGTTGTGAGGCACTTCCTGGGGTGGTGAAGAGGAAGCCCTGGATAGACCTTGGTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 90 bp AACATGCTGAAGCCCGGAACACACCGTGCAAATAGCCCGTGGGGCTaGTATCCCAATTTCCTCTTTTACCAAGGTCTATCCAGGGCTTCC +
Preference number: 5 (lower is better)
Translates to: NMLKPGTHRANSPWG*YPNFLFYQGLSRAS
Trigger: GGAAGCCCTGGATAGACCTTGGTAAAAGAGGAAATTGGGATATCAGCCCCACGGGCTATTTGCACGGTGTGTTCCGGGCTTCAGCATGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 90 bp ACATCAGCCATTTGCTTGTTCACTCATCTGACACTGAGTATCCAGTaGTGGGTGCTCTGCTGCCCCTTCCGTCAAGGAACACACACGGAA +
Preference number: 5 (lower is better)
Translates to: TSAICLFTHLTLSIQ*WVLCCPFRQGTHTE
Trigger: TTCCGTGTGTGTTCCTTGACGGAAGGGGCAGCAGAGCACCCAGCACTGGATACTCAGTGTCAGATGAGTGAACAAGCAAATGGCTGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 90 bp TCAGCCATTTGCTTGTTCACTCATCTGACACTGAGTATCCAGTGCTaGGTGCTCTGCTGCCCCTTCCGTCAAGGAACACACACGGAATTA +
Preference number: 5 (lower is better)
Translates to: SAICLFTHLTLSIQC*VLCCPFRQGTHTEL
Trigger: TAATTCCGTGTGTGTTCCTTGACGGAAGGGGCAGCAGAGCACCCAGCACTGGATACTCAGTGTCAGATGAGTGAACAAGCAAATGGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 90 bp GCCACTGTATCTGGCCTAGGACAGCTCTTGAATGGATTCTTAGCCTaGCCCCTCATGGGACATTCAACTGGGGTTGACAGAAGCTTCATT +
Preference number: 5 (lower is better)
Translates to: ATVSGLGQLLNGFLA*PLMGHSTGVDRSFI
Trigger: AATGAAGCTTCTGTCAACCCCAGTTGAATGTCCCATGAGGGGCCAGGCTAAGAATCCATTCAAGAGCTGTCCTAGGCCAGATACAGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 90 bp AGGCTAAGAGCTGGGAGCGGAGTACATCTCCTCGTAGGCAAACATTaGAACCAGACATCAGCCATTTGCTTGTTCACTCATCTGACACTG +
Preference number: 5 (lower is better)
Translates to: RLRAGSGVHLLVGKH*NQTSAICLFTHLTL
Trigger: CAGTGTCAGATGAGTGAACAAGCAAATGGCTGATGTCTGGTTTCAATGTTTGCCTACGAGGAGATGTACTCCGCTCCCAGCTCTTAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 90 bp GAATCAGTTCAAGGTTTTAGAAGTGGTGACGTAACCGCTGGGTTTTaGAGGAGAAGAGTTCACAAGCAGATAGAGAGGATGTTGCAGGCA +
Preference number: 5 (lower is better)
Translates to: ESVQGFRSGDVTAGF*RRRVHKQIERMLQA
Trigger: TGCCTGCAACATCCTCTCTATCTGCTTGTGAACTCTTCTCCTTCAAAACCCAGCGGTTACGTCACCACTTCTAAAACCTTGAACTGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 90 bp ATGGTGGTATGCCACAAGGCAGAAAGCCTGAAACAGATATACCAATaGCAAGTTCAAGGAACTGTGGTGAGGTGGGAAAATGTAACAAAA +
Preference number: 5 (lower is better)
Translates to: MVVCHKAESLKQIYQ*QVQGTVVRWENVTK
Trigger: TTTTGTTACATTTTCCCACCTCACCACAGTTCCTTGAACTTGTCATTGGTATATCTGTTTCAGGCTTTCTGCCTTGTGGCATACCACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 72 bp CTGCCCCAGAACTGGCCTGGAACCTGTCTCCCACCCTaGCTGCCCCGCCCTTCAGCTCCAAGAGCAAACCAT +
Preference number: 6 (lower is better)
Translates to: LPQNWPGTCLPP*LPRPSAPRANH
Trigger: ATGGTTTGCTCTTGGAGCTGAAGGGCGGGGCAGCCAGGGTGGGAGACAGGTTCCAGGCCAGTTCTGGGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 72 bp GTGGTGAACAGCACCTCCCACAGCTGGCCAGACTGCTaGTTGGGGAACTGCCTTGAGCAAAGGGGCAGAGGG +
Preference number: 6 (lower is better)
Translates to: VVNSTSHSWPDC*LGNCLEQRGRG
Trigger: CCCTCTGCCCCTTTGCTCAAGGCAGTTCCCCAAGCAGCAGTCTGGCCAGCTGTGGGAGGTGCTGTTCACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 90 bp ACAGCACCTCCCACAGCTGGCCAGACTGCTGCTTGGGGAACTGCCTaGAGCAAAGGGGCAGAGGGAGTTGGAATGGGCATCAGAACCCAG +
Preference number: 6 (lower is better)
Translates to: TAPPTAGQTAAWGTA*SKGAEGVGMGIRTQ
Trigger: CTGGGTTCTGATGCCCATTCCAACTCCCTCTGCCCCTTTGCTCAAGGCAGTTCCCCAAGCAGCAGTCTGGCCAGCTGTGGGAGGTGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 72 bp GAAGTGGTGAACAGCACCTCCCACAGCTGGCCAGACTaGTGCTTGGGGAACTGCCTTGAGCAAAGGGGCAGA +
Preference number: 6 (lower is better)
Translates to: EVVNSTSHSWPD*CLGNCLEQRGR
Trigger: TCTGCCCCTTTGCTCAAGGCAGTTCCCCAAGCAGCAGTCTGGCCAGCTGTGGGAGGTGCTGTTCACCACTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 90 bp TTGGAAGTGGTGAACAGCACCTCCCACAGCTGGCCAGACTGCTGCTaGGGGAACTGCCTTGAGCAAAGGGGCAGAGGGAGTTGGAATGGG +
Preference number: 6 (lower is better)
Translates to: LEVVNSTSHSWPDCC*GNCLEQRGRGSWNG
Trigger: CCCATTCCAACTCCCTCTGCCCCTTTGCTCAAGGCAGTTCCCCAAGCAGCAGTCTGGCCAGCTGTGGGAGGTGCTGTTCACCACTTCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 72 bp AGAGGGAGTTGGAATGGGCATCAGAACCCAGGCTGCTaGCCCTGCTCCTTGAAAGGGCTTCAGAACACACTG +
Preference number: 6 (lower is better)
Translates to: RGSWNGHQNPGC*PCSLKGLQNTL
Trigger: CAGTGTGTTCTGAAGCCCTTTCAAGGAGCAGGGGCAGCAGCCTGGGTTCTGATGCCCATTCCAACTCCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 72 bp GGGAAAGTGCTAGATGTGGGCCCCCAACCAGGTCCATaGGTTTTGGCAAGTCTGTTGAGTCTGGGCCTCTGT +
Preference number: 6 (lower is better)
Translates to: GKVLDVGPQPGP*VLASLLSLGLC
Trigger: ACAGAGGCCCAGACTCAACAGACTTGCCAAAACCCATGGACCTGGTTGGGGGCCCACATCTAGCACTTTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 72 bp AGTTGGAATGGGCATCAGAACCCAGGCTGCTGCCCCTaGTCCTTGAAAGGGCTTCAGAACACACTGCCCTAT +
Preference number: 6 (lower is better)
Translates to: SWNGHQNPGCCP*SLKGLQNTLPY
Trigger: ATAGGGCAGTGTGTTCTGAAGCCCTTTCAAGGAGCAGGGGCAGCAGCCTGGGTTCTGATGCCCATTCCAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 72 bp CTAATCTTGGAAGTGGTGAACAGCACCTCCCACAGCTaGCCAGACTGCTGCTTGGGGAACTGCCTTGAGCAA +
Preference number: 6 (lower is better)
Translates to: LILEVVNSTSHS*PDCCLGNCLEQ
Trigger: TTGCTCAAGGCAGTTCCCCAAGCAGCAGTCTGGCCAGCTGTGGGAGGTGCTGTTCACCACTTCCAAGATTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 72 bp GGCCCCCAACCAGGTCCATGGGTTTTGGCAAGTCTGTaGAGTCTGGGCCTCTGTTTCTTCCTCTCTAATCGG +
Preference number: 6 (lower is better)
Translates to: GPQPGPWVLASL*SLGLCFFLSNR
Trigger: CCGATTAGAGAGGAAGAAACAGAGGCCCAGACTCAACAGACTTGCCAAAACCCATGGACCTGGTTGGGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 90 bp CTAGCCCCTATTTCCCAGGATCCCAAGGACCAAGTTCTATTCAGTTaGTTGTCCACACCTGGGTCTGCCATTCTGAGGGTGGGGAGGTGG +
Preference number: 6 (lower is better)
Translates to: LAPISQDPKDQVLFS*LSTPGSAILRVGRW
Trigger: CCACCTCCCCACCCTCAGAATGGCAGACCCAGGTGTGGACAACAAACTGAATAGAACTTGGTCCTTGGGATCCTGGGAAATAGGGGCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 72 bp GCCCCCAACCAGGTCCATGGGTTTTGGCAAGTCTGTTaGGTCTGGGCCTCTGTTTCTTCCTCTCTAATCGGA +
Preference number: 6 (lower is better)
Translates to: APNQVHGFWQVC*VWASVSSSLIG
Trigger: TCCGATTAGAGAGGAAGAAACAGAGGCCCAGACTCAACAGACTTGCCAAAACCCATGGACCTGGTTGGGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 72 bp TGCTTGTTCACTCATCTGACACTGAGTATCCAGTGCTaGGTGCTCTGCTGCCCCTTCCGTCAAGGAACACAC +
Preference number: 6 (lower is better)
Translates to: CLFTHLTLSIQC*VLCCPFRQGTH
Trigger: GTGTGTTCCTTGACGGAAGGGGCAGCAGAGCACCCAGCACTGGATACTCAGTGTCAGATGAGTGAACAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 72 bp TCCCAGGATCCCAAGGACCAAGTTCTATTCAGTTTGTaGTCCACACCTGGGTCTGCCATTCTGAGGGTGGGG +
Preference number: 6 (lower is better)
Translates to: SQDPKDQVLFSL*STPGSAILRVG
Trigger: CCCCACCCTCAGAATGGCAGACCCAGGTGTGGACAACAAACTGAATAGAACTTGGTCCTTGGGATCCTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 90 bp CTGGGGAAAGTGCTAGATGTGGGCCCCCAACCAGGTCCATGGGTTTaGGCAAGTCTGTTGAGTCTGGGCCTCTGTTTCTTCCTCTCTAAT +
Preference number: 6 (lower is better)
Translates to: LGKVLDVGPQPGPWV*ASLLSLGLCFFLSN
Trigger: ATTAGAGAGGAAGAAACAGAGGCCCAGACTCAACAGACTTGCCAAAACCCATGGACCTGGTTGGGGGCCCACATCTAGCACTTTCCCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 72 bp ACTCATCTGACACTGAGTATCCAGTGCTGGGTGCTCTaGTGCCCCTTCCGTCAAGGAACACACACGGAATTA +
Preference number: 6 (lower is better)
Translates to: THLTLSIQCWVL*CPFRQGTHTEL
Trigger: TAATTCCGTGTGTGTTCCTTGACGGAAGGGGCAGCAGAGCACCCAGCACTGGATACTCAGTGTCAGATGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 72 bp TCTGGCCTAGGACAGCTCTTGAATGGATTCTTAGCCTaGCCCCTCATGGGACATTCAACTGGGGTTGACAGA +
Preference number: 6 (lower is better)
Translates to: SGLGQLLNGFLA*PLMGHSTGVDR
Trigger: TCTGTCAACCCCAGTTGAATGTCCCATGAGGGGCCAGGCTAAGAATCCATTCAAGAGCTGTCCTAGGCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 72 bp AAGCCCGGAACACACCGTGCAAATAGCCCGTGGGGCTaGTATCCCAATTTCCTCTTTTACCAAGGTCTATCC +
Preference number: 6 (lower is better)
Translates to: KPGTHRANSPWG*YPNFLFYQGLS
Trigger: GGATAGACCTTGGTAAAAGAGGAAATTGGGATATCAGCCCCACGGGCTATTTGCACGGTGTGTTCCGGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS GCA 72 bp ATTTGCTTGTTCACTCATCTGACACTGAGTATCCAGTaGTGGGTGCTCTGCTGCCCCTTCCGTCAAGGAACA +
Preference number: 6 (lower is better)
Translates to: ICLFTHLTLSIQ*WVLCCPFRQGT
Trigger: TGTTCCTTGACGGAAGGGGCAGCAGAGCACCCAGCACTGGATACTCAGTGTCAGATGAGTGAACAAGCAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 72 bp ATTTCCCAGGATCCCAAGGACCAAGTTCTATTCAGTTaGTTGTCCACACCTGGGTCTGCCATTCTGAGGGTG +
Preference number: 6 (lower is better)
Translates to: ISQDPKDQVLFS*LSTPGSAILRV
Trigger: CACCCTCAGAATGGCAGACCCAGGTGTGGACAACAAACTGAATAGAACTTGGTCCTTGGGATCCTGGGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 90 bp GAGGCTAAGAGCTGGGAGCGGAGTACATCTCCTCGTAGGCAAACATaGAAACCAGACATCAGCCATTTGCTTGTTCACTCATCTGACACT +
Preference number: 6 (lower is better)
Translates to: EAKSWERSTSPRRQT*KPDISHLLVHSSDT
Trigger: AGTGTCAGATGAGTGAACAAGCAAATGGCTGATGTCTGGTTTCAATGTTTGCCTACGAGGAGATGTACTCCGCTCCCAGCTCTTAGCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 72 bp GCTGGGAGCGGAGTACATCTCCTCGTAGGCAAACATTaGAACCAGACATCAGCCATTTGCTTGTTCACTCAT +
Preference number: 6 (lower is better)
Translates to: AGSGVHLLVGKH*NQTSAICLFTH
Trigger: ATGAGTGAACAAGCAAATGGCTGATGTCTGGTTTCAATGTTTGCCTACGAGGAGATGTACTCCGCTCCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 72 bp TCCTCTCTAATCGGAGGGGTGGGAGAATGGGATTTTTaGGGTCCCTTCCAGTTCTGTGATCTAAACAAGTTG +
Preference number: 6 (lower is better)
Translates to: SSLIGGVGEWDF*GPFQFCDLNKL
Trigger: CAACTTGTTTAGATCACAGAACTGGAAGGGACCCCAAAAATCCCATTCTCCCACCCCTCCGATTAGAGAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CCA 72 bp ATACCTAAGGAGGCTTCTGACATCTACTGTTTTCCTTaGCACGAGAAGGGCAGGAGCTGGGCTGTGATTTTT +
Preference number: 6 (lower is better)
Translates to: IPKEASDIYCFP*HEKGRSWAVIF
Trigger: AAAAATCACAGCCCAGCTCCTGCCCTTCTCGTGCCAAGGAAAACAGTAGATGTCAGAAGCCTCCTTAGGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 72 bp AGCTGGGAGCGGAGTACATCTCCTCGTAGGCAAACATaGAAACCAGACATCAGCCATTTGCTTGTTCACTCA +
Preference number: 6 (lower is better)
Translates to: SWERSTSPRRQT*KPDISHLLVHS
Trigger: TGAGTGAACAAGCAAATGGCTGATGTCTGGTTTCAATGTTTGCCTACGAGGAGATGTACTCCGCTCCCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 90 bp AGTACATCTCCTCGTAGGCAAACATTGAAACCAGACATCAGCCATTaGCTTGTTCACTCATCTGACACTGAGTATCCAGTGCTGGGTGCT +
Preference number: 6 (lower is better)
Translates to: STSPRRQTLKPDISH*LVHSSDTEYPVLGA
Trigger: AGCACCCAGCACTGGATACTCAGTGTCAGATGAGTGAACAAGCAAATGGCTGATGTCTGGTTTCAATGTTTGCCTACGAGGAGATGTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 90 bp AGGCTAGATAGGACCTTAGAGTCACCTTTTTACCACCAGGAGTCCTaGTGTCATCCTTATCCCACTCCCTCTACCATCCTGGACATAATT +
Preference number: 6 (lower is better)
Translates to: RLDRTLESPFYHQES*CHPYPTPSTILDII
Trigger: AATTATGTCCAGGATGGTAGAGGGAGTGGGATAAGGATGACACAAGGACTCCTGGTGGTAAAAAGGTGACTCTAAGGTCCTATCTAGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 90 bp AATCCTGGAATCAGTCTGGGAACAAGTCCCAACACATGTCACTGTTaGCTTTGTCATCCTGATTCAATGACCTCATACAAGGAAGGGAGG +
Preference number: 6 (lower is better)
Translates to: NPGISLGTSPNTCHC*LCHPDSMTSYKEGR
Trigger: CCTCCCTTCCTTGTATGAGGTCATTGAATCAGGATGACAAAGCAAACAGTGACATGTGTTGGGACTTGTTCCCAGACTGATTCCAGGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 72 bp CAAGGTTTTAGAAGTGGTGACGTAACCGCTGGGTTTTaGAGGAGAAGAGTTCACAAGCAGATAGAGAGGATG +
Preference number: 6 (lower is better)
Translates to: QGFRSGDVTAGF*RRRVHKQIERM
Trigger: CATCCTCTCTATCTGCTTGTGAACTCTTCTCCTTCAAAACCCAGCGGTTACGTCACCACTTCTAAAACCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 72 bp CCTCGTAGGCAAACATTGAAACCAGACATCAGCCATTaGCTTGTTCACTCATCTGACACTGAGTATCCAGTG +
Preference number: 6 (lower is better)
Translates to: PRRQTLKPDISH*LVHSSDTEYPV
Trigger: CACTGGATACTCAGTGTCAGATGAGTGAACAAGCAAATGGCTGATGTCTGGTTTCAATGTTTGCCTACGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 72 bp TGCCACAAGGCAGAAAGCCTGAAACAGATATACCAATaGCAAGTTCAAGGAACTGTGGTGAGGTGGGAAAAT +
Preference number: 6 (lower is better)
Translates to: CHKAESLKQIYQ*QVQGTVVRWEN
Trigger: ATTTTCCCACCTCACCACAGTTCCTTGAACTTGTCATTGGTATATCTGTTTCAGGCTTTCTGCCTTGTGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS CAA 72 bp ATCAGTCTGGGAACAAGTCCCAACACATGTCACTGTTaGCTTTGTCATCCTGATTCAATGACCTCATACAAG +
Preference number: 6 (lower is better)
Translates to: ISLGTSPNTCHC*LCHPDSMTSYK
Trigger: CTTGTATGAGGTCATTGAATCAGGATGACAAAGCAAACAGTGACATGTGTTGGGACTTGTTCCCAGACTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2
CDS TCA 72 bp ATAATAGTATGGTGGTATGCCACAAGGCAGAAAGCCTaGAACAGATATACCAATGACAAGTTCAAGGAACTG +
Preference number: 6 (lower is better)
Translates to: IIVWWYATRQKA*NRYTNDKFKEL
Trigger: CAGTTCCTTGAACTTGTCATTGGTATATCTGTTTCAGGCTTTCTGCCTTGTGGCATACCACCATACTATTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379677.2