Pregenerated sensors for LINC01456 (Homo sapiens)
Ensembl gene IDs: ENSG00000225882Ensembl transcript IDs: ENST00000453902.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTCCCAAAGCAATATAGCCAAATGTTGGCCAAAGCTGCAGTTATCTaGAGCCTTCACTTGGGCTGGACAGTCTCCTTCCAAGGTGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: FPKQYSQMLAKAAVI*SLHLGWTVSFQGGP Trigger: TGGGCCACCTTGGAAGGAGACTGTCCAGCCCAAGTGAAGGCTGCAGATAACTGCAGCTTTGGCCAACATTTGGCTATATTGCTTTGGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS GCA 90 bp | GAAACCTGGGTCCCTGAATTACCGCCTGTGAGCAAGTCACTCACTTaGTGTCCAGGAACACCTACAAGAGAAAATTTCAGTGTCAAGACA | + |
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Preference number: 5 (lower is better) Translates to: ETWVPELPPVSKSLT*CPGTPTRENFSVKT Trigger: TGTCTTGACACTGAAATTTTCTCTTGTAGGTGTTCCTGGACAGCAAGTGAGTGACTTGCTCACAGGCGGTAATTCAGGGACCCAGGTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS CCA 90 bp | AGATGGTTCTGGCTTGAGATTTCCCAAAGCAATATAGCCAAATGTTaGCCAAAGCTGCAGTTATCTGCAGCCTTCACTTGGGCTGGACAG | + |
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Preference number: 5 (lower is better) Translates to: RWFWLEISQSNIAKC*PKLQLSAAFTWAGQ Trigger: CTGTCCAGCCCAAGTGAAGGCTGCAGATAACTGCAGCTTTGGCCAACATTTGGCTATATTGCTTTGGGAAATCTCAAGCCAGAACCATCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS CCA 72 bp | CAGCCTTCACTTGGGCTGGACAGTCTCCTTCCAAGGTaGCCCATTCCCATAGCTGGCAAATTGGTGCTGGTG | + |
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Preference number: 6 (lower is better) Translates to: QPSLGLDSLLPR*PIPIAGKLVLV Trigger: CACCAGCACCAATTTGCCAGCTATGGGAATGGGCCACCTTGGAAGGAGACTGTCCAGCCCAAGTGAAGGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS CCA 72 bp | TGTTGGCCAAAGCTGCAGTTATCTGCAGCCTTCACTTaGGCTGGACAGTCTCCTTCCAAGGTGGCCCATTCC | + |
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Preference number: 6 (lower is better) Translates to: CWPKLQLSAAFT*AGQSPSKVAHS Trigger: GGAATGGGCCACCTTGGAAGGAGACTGTCCAGCCCAAGTGAAGGCTGCAGATAACTGCAGCTTTGGCCAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS TCA 72 bp | AGATCCTTTCCATGTGGTTCTCTCCACAGGGCTGCCTaGACGTCCTCATGGCATGAAGACTGGCTTCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: RSFPCGSLHRAA*TSSWHEDWLLP Trigger: TGGGAGAAGCCAGTCTTCATGCCATGAGGACGTTCAGGCAGCCCTGTGGAGAGAACCACATGGAAAGGATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS CAA 72 bp | ATGTTGGCCAAAGCTGCAGTTATCTGCAGCCTTCACTaGGGCTGGACAGTCTCCTTCCAAGGTGGCCCATTC | + |
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Preference number: 6 (lower is better) Translates to: MLAKAAVICSLH*GWTVSFQGGPF Trigger: GAATGGGCCACCTTGGAAGGAGACTGTCCAGCCCAAGTGAAGGCTGCAGATAACTGCAGCTTTGGCCAACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS TCA 72 bp | ACAGTAGAGCTACCAGGTAGAAGAAACCTGGGTCCCTaGATTACCGCCTGTGAGCAAGTCACTCACTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: TVELPGRRNLGP*ITACEQVTHLL Trigger: CAGCAAGTGAGTGACTTGCTCACAGGCGGTAATTCAGGGACCCAGGTTTCTTCTACCTGGTAGCTCTACTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS TCA 72 bp | TTCTCTCCACAGGGCTGCCTGAACGTCCTCATGGCATaGAGACTGGCTTCTCCCAAAGTGAATGACCTTAGT | + |
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Preference number: 6 (lower is better) Translates to: FSPQGCLNVLMA*RLASPKVNDLS Trigger: ACTAAGGTCATTCACTTTGGGAGAAGCCAGTCTTCATGCCATGAGGACGTTCAGGCAGCCCTGTGGAGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS TCA 72 bp | ACGTCCTCATGGCATGAAGACTGGCTTCTCCCAAAGTaGATGACCTTAGTAGTGGTCTTTCTCCTGCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: TSSWHEDWLLPK*MTLVVVFLLLA Trigger: AGCCAGCAGGAGAAAGACCACTACTAAGGTCATTCACTTTGGGAGAAGCCAGTCTTCATGCCATGAGGACGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS GCA 72 bp | CAATATAGCCAAATGTTGGCCAAAGCTGCAGTTATCTaGAGCCTTCACTTGGGCTGGACAGTCTCCTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: QYSQMLAKAAVI*SLHLGWTVSFQ Trigger: TTGGAAGGAGACTGTCCAGCCCAAGTGAAGGCTGCAGATAACTGCAGCTTTGGCCAACATTTGGCTATATTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS CCA 72 bp | AAGCCTCATTCTTCAGTGATTAAAACCACTTTTCCTTaGCAAAGGCTGGAGGATCCTGAGGACCAGCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: KPHSSVIKTTFP*QRLEDPEDQLF Trigger: AAACAGCTGGTCCTCAGGATCCTCCAGCCTTTGCCAAGGAAAAGTGGTTTTAATCACTGAAGAATGAGGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS CCA 72 bp | TGGCTTGAGATTTCCCAAAGCAATATAGCCAAATGTTaGCCAAAGCTGCAGTTATCTGCAGCCTTCACTTGG | + |
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Preference number: 6 (lower is better) Translates to: WLEISQSNIAKC*PKLQLSAAFTW Trigger: CCAAGTGAAGGCTGCAGATAACTGCAGCTTTGGCCAACATTTGGCTATATTGCTTTGGGAAATCTCAAGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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| CDS CAA 72 bp | ATTTCAGTGTCAAGACACTTACAGTCTTTCCATATGTaGAAGCCTCATTCTTCAGTGATTAAAACCACTTTT | + |
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Preference number: 6 (lower is better) Translates to: ISVSRHLQSFHM*KPHSSVIKTTF Trigger: AAAAGTGGTTTTAATCACTGAAGAATGAGGCTTCAACATATGGAAAGACTGTAAGTGTCTTGACACTGAAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453902.1 |
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