Pregenerated sensors for LINC01444 (Homo sapiens)
Ensembl gene IDs: ENSG00000264301Ensembl transcript IDs: ENST00000580867.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCATCAGTGATGACTTGCAGAGTTTTGTGTGAAGTCCCAGGGCCCTaGCCCCACTACAAGGAGCTCGAATTTAGCAGGTCTGCAGTGGGC | + |
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Preference number: 5 (lower is better) Translates to: SSVMTCRVLCEVPGP*PHYKELEFSRSAVG Trigger: GCCCACTGCAGACCTGCTAAATTCGAGCTCCTTGTAGTGGGGCCAGGGCCCTGGGACTTCACACAAAACTCTGCAAGTCATCACTGATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000580867.1 |
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| CDS CAA 72 bp | TGGAGGGGCCAGTGCTGCTGGCACGTGGACAACTCTTaGAGTACCCAGGTTCCAGGTCTGTGGCTCCCGGTC | + |
|
Preference number: 6 (lower is better) Translates to: WRGQCCWHVDNS*STQVPGLWLPV Trigger: GACCGGGAGCCACAGACCTGGAACCTGGGTACTCAAAGAGTTGTCCACGTGCCAGCAGCACTGGCCCCTCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580867.1 |
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| CDS CCA 72 bp | ACATTTCTAACAAGCTCCTGGAGGGGCCAGTGCTGCTaGCACGTGGACAACTCTTTGAGTACCCAGGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: TFLTSSWRGQCC*HVDNSLSTQVP Trigger: TGGAACCTGGGTACTCAAAGAGTTGTCCACGTGCCAGCAGCACTGGCCCCTCCAGGAGCTTGTTAGAAATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580867.1 |
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| CDS CCA 72 bp | CCCACTACAAGGAGCTCGAATTTAGCAGGTCTGCAGTaGGCCTGGGCAGCTGTAGGTTTAAAAGTTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: PTTRSSNLAGLQ*AWAAVGLKVAQ Trigger: CTGTGCAACTTTTAAACCTACAGCTGCCCAGGCCCACTGCAGACCTGCTAAATTCGAGCTCCTTGTAGTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580867.1 |
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| CDS CAA 72 bp | GTCTTGGTTTTCTCATCAGTGATGACTTGCAGAGTTTaGTGTGAAGTCCCAGGGCCCTGGCCCCACTACAAG | + |
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Preference number: 6 (lower is better) Translates to: VLVFSSVMTCRV*CEVPGPWPHYK Trigger: CTTGTAGTGGGGCCAGGGCCCTGGGACTTCACACAAAACTCTGCAAGTCATCACTGATGAGAAAACCAAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000580867.1 |
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