Pregenerated sensors for LINC01442 (Homo sapiens)
Ensembl gene IDs: ENSG00000227510Ensembl transcript IDs: ENST00000414201.3, ENST00000618872.1, ENST00000662397.1, ENST00000669007.1
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGTGGAGGATACCGAATGCTGGTGTCCACTGCAGAATTGATCACTTaGTTGGTGTGTGGGGTGCAGCGGAGGACCCACATTTGGTCACAG | + |
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Preference number: 5 (lower is better) Translates to: SGGYRMLVSTAELIT*LVCGVQRRTHIWSQ Trigger: CTGTGACCAAATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS TCA 90 bp | GATGGAAGGCATCTGTCTCTCTGTTCCCTTCTGCCTTCTGCCATGTaGGGACACAGTGTACCAGCCTTCTGGTGGGTATGGCATTCAAGG | + |
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Preference number: 5 (lower is better) Translates to: DGRHLSLCSLLPSAM*GHSVPAFWWVWHSR Trigger: CCTTGAATGCCATACCCACCAGAAGGCTGGTACACTGTGTCCTCACATGGCAGAAGGCAGAAGGGAACAGAGAGACAGATGCCTTCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414201.3 |
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| CDS TCA 90 bp | AGGATTGAAGTGGAGGATACCGAATGCTGGTGTCCACTGCAGAATTaGTCACTTGCTTGGTGTGTGGGGTGCAGCGGAGGACCCACATTT | + |
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Preference number: 5 (lower is better) Translates to: RIEVEDTECWCPLQN*SLAWCVGCSGGPTF Trigger: AAATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCACTTCAATCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS GCA 90 bp | TATACAACCCTGCTGCCTGCCTACCAGTCTGTCTCATCTTGTTCATaGTTCTCTCTCACCCACTGTGCTCCACCTTCTTGCTGTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: YTTLLPAYQSVSSCS*FSLTHCAPPSCCFL Trigger: CAAGAAACAGCAAGAAGGTGGAGCACAGTGGGTGAGAGAGAAGCATGAACAAGATGAGACAGACTGGTAGGCAGGCAGCAGGGTTGTATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS TCA 90 bp | GCAACAGTGTTGGAAGGTGGGGCCTTTGGGGAGGCATTCAGTTCATaGAAGCTCCACTCTCACTTATGCATTCATGCTGTAATCAAAGGG | + |
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Preference number: 5 (lower is better) Translates to: ATVLEGGAFGEAFSS*KLHSHLCIHAVIKG Trigger: CCCTTTGATTACAGCATGAATGCATAAGTGAGAGTGGAGCTTTCATGAACTGAATGCCTCCCCAAAGGCCCCACCTTCCAACACTGTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414201.3 |
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| CDS TCA 90 bp | AACCTGCGGTATCTGATGCTATCTCCAGGTAGATGGTGTCAGGATTaGAGTGGAGGATACCGAATGCTGGTGTCCACTGCAGAATTGATC | + |
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Preference number: 5 (lower is better) Translates to: NLRYLMLSPGRWCQD*SGGYRMLVSTAELI Trigger: GATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCACTTCAATCCTGACACCATCTACCTGGAGATAGCATCAGATACCGCAGGTT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS GCA 90 bp | CTACCAGTCTGTCTCATCTTGTTCATGCTTCTCTCTCACCCACTGTaGTCCACCTTCTTGCTGTTTCTTGGACACAGCCAGTTTATTCCT | + |
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Preference number: 5 (lower is better) Translates to: LPVCLILFMLLSHPL*STFLLFLGHSQFIP Trigger: AGGAATAAACTGGCTGTGTCCAAGAAACAGCAAGAAGGTGGAGCACAGTGGGTGAGAGAGAAGCATGAACAAGATGAGACAGACTGGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS TCA 90 bp | AAAGCTCCACTCTCACTTATGCATTCATGCTGTAATCAAAGGGCTTaGTGGAAGGCATCTGTCTCTCTGTTCCCTTCTGCCTTCTGCCAT | + |
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Preference number: 5 (lower is better) Translates to: KAPLSLMHSCCNQRA*WKASVSLFPSAFCH Trigger: ATGGCAGAAGGCAGAAGGGAACAGAGAGACAGATGCCTTCCATCAAGCCCTTTGATTACAGCATGAATGCATAAGTGAGAGTGGAGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414201.3 |
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| CDS GCA 90 bp | TGCCTGCATGCACAGTACCCTCCTTATGCTTGGAAAATGACCACATaGAGTGTGTTTAGGAAGTTGTACACATGCCCATCTGAGGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: CLHAQYPPYAWKMTT*SVFRKLYTCPSEAF Trigger: AAAAGCCTCAGATGGGCATGTGTACAACTTCCTAAACACACTGCATGTGGTCATTTTCCAAGCATAAGGAGGGTACTGTGCATGCAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS GCA 90 bp | GGAGTGTGCCTGGAAGATCATACTCAGCCATTTTGTCTCTTAATGTaGATGCCCAGAAATTTGCTCCCCACTGGCATCTGCATTCAATTA | + |
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Preference number: 5 (lower is better) Translates to: GVCLEDHTQPFCLLM*MPRNLLPTGICIQL Trigger: TAATTGAATGCAGATGCCAGTGGGGAGCAAATTTCTGGGCATGCACATTAAGAGACAAAATGGCTGAGTATGATCTTCCAGGCACACTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CCA 72 bp | AGACTTGCCTCCTCCCATCCCCTGAGCAGTGATCCATaGCCCAAGGAGCCCTTTGAGACGGCAGTCTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: RLASSHPLSSDP*PKEPFETAVSR Trigger: TCTGGAGACTGCCGTCTCAAAGGGCTCCTTGGGCCATGGATCACTGCTCAGGGGATGGGAGGAGGCAAGTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000618872.1 ENST00000662397.1 ENST00000669007.1 |
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| CDS TCA 72 bp | GTGGAGGATACCGAATGCTGGTGTCCACTGCAGAATTaGTCACTTGCTTGGTGTGTGGGGTGCAGCGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: VEDTECWCPLQN*SLAWCVGCSGG Trigger: TCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 72 bp | AGTGGAGGATACCGAATGCTGGTGTCCACTGCAGAATaGATCACTTGCTTGGTGTGTGGGGTGCAGCGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SGGYRMLVSTAE*ITCLVCGVQRR Trigger: CCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 90 bp | GGAGGATACCGAATGCTGGTGTCCACTGCAGAATTGATCACTTGCTaGGTGTGTGGGGTGCAGCGGAGGACCCACATTTGGTCACAGAAG | + |
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Preference number: 6 (lower is better) Translates to: GGYRMLVSTAELITC*VCGVQRRTHIWSQK Trigger: CTTCTGTGACCAAATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS GCA 72 bp | GGCTTGATGGAAGGCATCTGTCTCTCTGTTCCCTTCTaGCTTCTGCCATGTGAGGACACAGTGTACCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: GLMEGICLSVPF*LLPCEDTVYQP Trigger: AGGCTGGTACACTGTGTCCTCACATGGCAGAAGGCAGAAGGGAACAGAGAGACAGATGCCTTCCATCAAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414201.3 |
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| CDS GCA 72 bp | TACCGAATGCTGGTGTCCACTGCAGAATTGATCACTTaGTTGGTGTGTGGGGTGCAGCGGAGGACCCACATT | + |
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Preference number: 6 (lower is better) Translates to: YRMLVSTAELIT*LVCGVQRRTHI Trigger: AATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 72 bp | ATACCGAATGCTGGTGTCCACTGCAGAATTGATCACTaGCTTGGTGTGTGGGGTGCAGCGGAGGACCCACAT | + |
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Preference number: 6 (lower is better) Translates to: IPNAGVHCRIDH*LGVWGAAEDPH Trigger: ATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 90 bp | AAGTGGAGGATACCGAATGCTGGTGTCCACTGCAGAATTGATCACTaGCTTGGTGTGTGGGGTGCAGCGGAGGACCCACATTTGGTCACA | + |
|
Preference number: 6 (lower is better) Translates to: KWRIPNAGVHCRIDH*LGVWGAAEDPHLVT Trigger: TGTGACCAAATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS TCA 72 bp | ATAATTGCCAAACCATCACCCAACATTCCTAGTAGGTaGGGGAGGACCCTCTCCTGCCCCACTCATGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: IIAKPSPNIPSR*GRTLSCPTHAC Trigger: ACAGGCATGAGTGGGGCAGGAGAGGGTCCTCCCTCACCTACTAGGAATGTTGGGTGATGGTTTGGCAATTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS GCA 72 bp | GCGTCATCTTGGAAGTCGATTGCAGTCCTCACCAGATaGTGGTACCTTGATCTTGGACTTTCAAGCCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: ASSWKSIAVLTR*WYLDLGLSSLC Trigger: GCACAGGCTTGAAAGTCCAAGATCAAGGTACCAGCATCTGGTGAGGACTGCAATCGACTTCCAAGATGACGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414201.3 |
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| CDS CAA 90 bp | ATTGATCACTTGCTTGGTGTGTGGGGTGCAGCGGAGGACCCACATTaGGTCACAGAAGTCTTCTGTGTTCATTGTTGTGGGATGAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: IDHLLGVWGAAEDPH*VTEVFCVHCCGMRA Trigger: TGCTCTCATCCCACAACAATGAACACAGAAGACTTCTGTGACCAAATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CCA 72 bp | GTGGGCTGCCTGCATGCACAGTACCCTCCTTATGCTTaGAAAATGACCACATGCAGTGTGTTTAGGAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: VGCLHAQYPPYA*KMTTCSVFRKL Trigger: CAACTTCCTAAACACACTGCATGTGGTCATTTTCCAAGCATAAGGAGGGTACTGTGCATGCAGGCAGCCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 90 bp | GTTAGAAACCTAATCCCACTGCAACAGTGTTGGAAGGTGGGGCCTTaGGGGAGGCATTCAGTTCATGAAAGCTCCACTCTCACTTATGCA | + |
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Preference number: 6 (lower is better) Translates to: VRNLIPLQQCWKVGP*GRHSVHESSTLTYA Trigger: TGCATAAGTGAGAGTGGAGCTTTCATGAACTGAATGCCTCCCCAAAGGCCCCACCTTCCAACACTGTTGCAGTGGGATTAGGTTTCTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414201.3 |
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| CDS TCA 72 bp | TTGGAAGGTGGGGCCTTTGGGGAGGCATTCAGTTCATaGAAGCTCCACTCTCACTTATGCATTCATGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: LEGGAFGEAFSS*KLHSHLCIHAV Trigger: TACAGCATGAATGCATAAGTGAGAGTGGAGCTTTCATGAACTGAATGCCTCCCCAAAGGCCCCACCTTCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414201.3 |
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| CDS CCA 72 bp | CTCTCACCCACTGTGCTCCACCTTCTTGCTGTTTCTTaGACACAGCCAGTTTATTCCTGTTTTAGTGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: LSPTVLHLLAVS*TQPVYSCFSAL Trigger: CAAGGCACTAAAACAGGAATAAACTGGCTGTGTCCAAGAAACAGCAAGAAGGTGGAGCACAGTGGGTGAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS CAA 90 bp | TCCCTTTTCTGGTGGAGTGTGCCTGGAAGATCATACTCAGCCATTTaGTCTCTTAATGTGCATGCCCAGAAATTTGCTCCCCACTGGCAT | + |
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Preference number: 6 (lower is better) Translates to: SLFWWSVPGRSYSAI*SLNVHAQKFAPHWH Trigger: ATGCCAGTGGGGAGCAAATTTCTGGGCATGCACATTAAGAGACAAAATGGCTGAGTATGATCTTCCAGGCACACTCCACCAGAAAAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS TCA 72 bp | CTCTCACTTATGCATTCATGCTGTAATCAAAGGGCTTaGTGGAAGGCATCTGTCTCTCTGTTCCCTTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: LSLMHSCCNQRA*WKASVSLFPSA Trigger: GGCAGAAGGGAACAGAGAGACAGATGCCTTCCATCAAGCCCTTTGATTACAGCATGAATGCATAAGTGAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414201.3 |
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| CDS TCA 72 bp | CAGACGCTCATGGCAAAAATGCTGCTCACTATGCCATaGGTCCTACAGCTTGCTTTCTCCAAAGCTGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: QTLMAKMLLTMP*VLQLAFSKAAK Trigger: TTTTGCAGCTTTGGAGAAAGCAAGCTGTAGGACTCATGGCATAGTGAGCAGCATTTTTGCCATGAGCGTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000618872.1 ENST00000662397.1 ENST00000669007.1 |
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| CDS GCA 72 bp | CTGGAAGATCATACTCAGCCATTTTGTCTCTTAATGTaGATGCCCAGAAATTTGCTCCCCACTGGCATCTGC | + |
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Preference number: 6 (lower is better) Translates to: LEDHTQPFCLLM*MPRNLLPTGIC Trigger: GCAGATGCCAGTGGGGAGCAAATTTCTGGGCATGCACATTAAGAGACAAAATGGCTGAGTATGATCTTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS GCA 72 bp | TCATGCTTCTCTCTCACCCACTGTGCTCCACCTTCTTaGTGTTTCTTGGACACAGCCAGTTTATTCCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: SCFSLTHCAPPS*CFLDTASLFLF Trigger: AAACAGGAATAAACTGGCTGTGTCCAAGAAACAGCAAGAAGGTGGAGCACAGTGGGTGAGAGAGAAGCATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS GCA 72 bp | TTCTTAATCTGGTTGGTAAGCCCTATACAACCCTGCTaGCTGCCTACCAGTCTGTCTCATCTTGTTCATGCT | + |
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Preference number: 6 (lower is better) Translates to: FLIWLVSPIQPC*LPTSLSHLVHA Trigger: AGCATGAACAAGATGAGACAGACTGGTAGGCAGGCAGCAGGGTTGTATAGGGCTTACCAACCAGATTAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS CAA 72 bp | TGGTGGAGTGTGCCTGGAAGATCATACTCAGCCATTTaGTCTCTTAATGTGCATGCCCAGAAATTTGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: WWSVPGRSYSAI*SLNVHAQKFAP Trigger: GGGAGCAAATTTCTGGGCATGCACATTAAGAGACAAAATGGCTGAGTATGATCTTCCAGGCACACTCCACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 72 bp | TTCATGCTTCTCTCTCACCCACTGTGCTCCACCTTCTaGCTGTTTCTTGGACACAGCCAGTTTATTCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: FMLLSHPLCSTF*LFLGHSQFIPV Trigger: AACAGGAATAAACTGGCTGTGTCCAAGAAACAGCAAGAAGGTGGAGCACAGTGGGTGAGAGAGAAGCATGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS CAA 90 bp | TGCAGCGGAGGACCCACATTTGGTCACAGAAGTCTTCTGTGTTCATaGTTGTGGGATGAGAGCAGAGGAAAATCTATTTTCTCCACAGTT | + |
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Preference number: 6 (lower is better) Translates to: CSGGPTFGHRSLLCS*LWDESRGKSIFSTV Trigger: AACTGTGGAGAAAATAGATTTTCCTCTGCTCTCATCCCACAACAATGAACACAGAAGACTTCTGTGACCAAATGTGGGTCCTCCGCTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS GCA 72 bp | ATGACCACATGCAGTGTGTTTAGGAAGTTGTACACATaGCCATCTGAGGCTTTTCTTCCCTTTTCTGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: MTTCSVFRKLYT*PSEAFLPFSGG Trigger: TCCACCAGAAAAGGGAAGAAAAGCCTCAGATGGGCATGTGTACAACTTCCTAAACACACTGCATGTGGTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS GCA 72 bp | GCACAGTACCCTCCTTATGCTTGGAAAATGACCACATaGAGTGTGTTTAGGAAGTTGTACACATGCCCATCT | + |
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Preference number: 6 (lower is better) Translates to: AQYPPYAWKMTT*SVFRKLYTCPS Trigger: AGATGGGCATGTGTACAACTTCCTAAACACACTGCATGTGGTCATTTTCCAAGCATAAGGAGGGTACTGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 90 bp | AGCGGAGGACCCACATTTGGTCACAGAAGTCTTCTGTGTTCATTGTaGTGGGATGAGAGCAGAGGAAAATCTATTTTCTCCACAGTTTGT | + |
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Preference number: 6 (lower is better) Translates to: SGGPTFGHRSLLCSL*WDESRGKSIFSTVC Trigger: ACAAACTGTGGAGAAAATAGATTTTCCTCTGCTCTCATCCCACAACAATGAACACAGAAGACTTCTGTGACCAAATGTGGGTCCTCCGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS GCA 72 bp | AATTTCTTAATCTGGTTGGTAAGCCCTATACAACCCTaGTGCCTGCCTACCAGTCTGTCTCATCTTGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: NFLIWLVSPIQP*CLPTSLSHLVH Trigger: ATGAACAAGATGAGACAGACTGGTAGGCAGGCAGCAGGGTTGTATAGGGCTTACCAACCAGATTAAGAAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS GCA 72 bp | CCATTAAAAGACCTCCCAACTGGTTCTGTGTTTCCTTaGTTGCTTTCCTATAATCCACCCACCAAAGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: PLKDLPTGSVFP*LLSYNPPTKEA Trigger: TGCTTCTTTGGTGGGTGGATTATAGGAAAGCAAGCAAGGAAACACAGAACCAGTTGGGAGGTCTTTTAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS CAA 72 bp | GCTTGGAAAATGACCACATGCAGTGTGTTTAGGAAGTaGTACACATGCCCATCTGAGGCTTTTCTTCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: AWKMTTCSVFRK*YTCPSEAFLPF Trigger: AAAGGGAAGAAAAGCCTCAGATGGGCATGTGTACAACTTCCTAAACACACTGCATGTGGTCATTTTCCAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 72 bp | TTAAAAGACCTCCCAACTGGTTCTGTGTTTCCTTGCTaGCTTTCCTATAATCCACCCACCAAAGAAGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: LKDLPTGSVFPC*LSYNPPTKEAE Trigger: CTCTGCTTCTTTGGTGGGTGGATTATAGGAAAGCAAGCAAGGAAACACAGAACCAGTTGGGAGGTCTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS TCA 72 bp | AGAAAAGAAAGTGTGCTTGGAAGAGACCCAAGCATGTaGCTTGAAGAACAAGTGTGGTCTTTAACCTGGATC | + |
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Preference number: 6 (lower is better) Translates to: RKESVLGRDPSM*LEEQVWSLTWI Trigger: GATCCAGGTTAAAGACCACACTTGTTCTTCAAGTCACATGCTTGGGTCTCTTCCAAGCACACTTTCTTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS TCA 72 bp | CTTTGTGTGGCTGGTTCCATCTCTTCTTTCAGATCTTaGTTTATGTCACCTATTCCGAGAAGGGTGATAACC | + |
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Preference number: 6 (lower is better) Translates to: LCVAGSISSFRS*FMSPIPRRVIT Trigger: GGTTATCACCCTTCTCGGAATAGGTGACATAAATCAAGATCTGAAAGAAGAGATGGAACCAGCCACACAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS CAA 72 bp | GGACCCACATTTGGTCACAGAAGTCTTCTGTGTTCATaGTTGTGGGATGAGAGCAGAGGAAAATCTATTTTC | + |
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Preference number: 6 (lower is better) Translates to: GPTFGHRSLLCS*LWDESRGKSIF Trigger: GAAAATAGATTTTCCTCTGCTCTCATCCCACAACAATGAACACAGAAGACTTCTGTGACCAAATGTGGGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 72 bp | CACTCTAGCAAACTAATCGAACAGGAGAAGGGAATTTaGGGAACTTCTATTTACAGCCAGTCAGAAGCACAG | + |
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Preference number: 6 (lower is better) Translates to: HSSKLIEQEKGI*GTSIYSQSEAQ Trigger: CTGTGCTTCTGACTGGCTGTAAATAGAAGTTCCCAAAATTCCCTTCTCCTGTTCGATTAGTTTGCTAGAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 72 bp | CAGCCATTTTGTCTCTTAATGTGCATGCCCAGAAATTaGCTCCCCACTGGCATCTGCATTCAATTAACACTT | + |
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Preference number: 6 (lower is better) Translates to: QPFCLLMCMPRN*LPTGICIQLTL Trigger: AAGTGTTAATTGAATGCAGATGCCAGTGGGGAGCAAATTTCTGGGCATGCACATTAAGAGACAAAATGGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000618872.1 ENST00000669007.1 |
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| CDS CAA 72 bp | TCTTTGTGTGGCTGGTTCCATCTCTTCTTTCAGATCTaGATTTATGTCACCTATTCCGAGAAGGGTGATAAC | + |
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Preference number: 6 (lower is better) Translates to: SLCGWFHLFFQI*IYVTYSEKGDN Trigger: GTTATCACCCTTCTCGGAATAGGTGACATAAATCAAGATCTGAAAGAAGAGATGGAACCAGCCACACAAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS CAA 90 bp | GATTCAAGGTCTTTGTGTGGCTGGTTCCATCTCTTCTTTCAGATCTaGATTTATGTCACCTATTCCGAGAAGGGTGATAACCTAATTCAG | + |
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Preference number: 6 (lower is better) Translates to: DSRSLCGWFHLFFQI*IYVTYSEKGDNLIQ Trigger: CTGAATTAGGTTATCACCCTTCTCGGAATAGGTGACATAAATCAAGATCTGAAAGAAGAGATGGAACCAGCCACACAAAGACCTTGAATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS CAA 90 bp | GGTGAACCATTAAAAGACCTCCCAACTGGTTCTGTGTTTCCTTGCTaGCTTTCCTATAATCCACCCACCAAAGAAGCAGAGTTATTTTTA | + |
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Preference number: 6 (lower is better) Translates to: GEPLKDLPTGSVFPC*LSYNPPTKEAELFL Trigger: TAAAAATAACTCTGCTTCTTTGGTGGGTGGATTATAGGAAAGCAAGCAAGGAAACACAGAACCAGTTGGGAGGTCTTTTAATGGTTCACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS TCA 72 bp | GTCCTACAGCTTGCTTTCTCCAAAGCTGCAAAATCTTaGGATGATCTAGAAGCTCTGTTTCAGTTTCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: VLQLAFSKAAKS*DDLEALFQFQS Trigger: ACTTTGAAACTGAAACAGAGCTTCTAGATCATCTCAAGATTTTGCAGCTTTGGAGAAAGCAAGCTGTAGGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000618872.1 ENST00000662397.1 ENST00000669007.1 |
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| CDS TCA 72 bp | ACCTATTCCGAGAAGGGTGATAACCTAATTCAGCCATaGGGTCACTTTATCACATTGATTCATCATAATTCT | + |
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Preference number: 6 (lower is better) Translates to: TYSEKGDNLIQP*GHFITLIHHNS Trigger: AGAATTATGATGAATCAATGTGATAAAGTGACCTCATGGCTGAATTAGGTTATCACCCTTCTCGGAATAGGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662397.1 |
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| CDS GCA 72 bp | TACTCAACAAGCACAAATTCAACACATTTCCTACATTaGAGTGTCATACACAACCTTCTCTCAGAACATCTT | + |
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Preference number: 6 (lower is better) Translates to: YSTSTNSTHFLH*SVIHNLLSEHL Trigger: AAGATGTTCTGAGAGAAGGTTGTGTATGACACTGCAATGTAGGAAATGTGTTGAATTTGTGCTTGTTGAGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414201.3 |
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