Pregenerated sensors for LINC01441 (Homo sapiens)
Ensembl gene IDs: ENSG00000224008Ensembl transcript IDs: ENST00000433766.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCCATTTGTTCCTTGTCCAGCCTCCCCCAGAATGCCGTCTTGGTTTaGATTCCTGGAGCGGTGTGGGGCAACCATCTGTATGACGTGACC | + |
|
Preference number: 5 (lower is better) Translates to: AICSLSSLPQNAVLV*IPGAVWGNHLYDVT Trigger: GGTCACGTCATACAGATGGTTGCCCCACACCGCTCCAGGAATTCAAACCAAGACGGCATTCTGGGGGAGGCTGGACAAGGAACAAATGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CCA 90 bp | GTAGTCCCCCAACCTACTGCCCGTTGCAGCCTGAGGGAACAAGGCTaGGTTTTTGTGGATGATGGTGTCCTGACGCAGGTCCACTTTAGT | + |
|
Preference number: 5 (lower is better) Translates to: VVPQPTARCSLREQG*VFVDDGVLTQVHFS Trigger: ACTAAAGTGGACCTGCGTCAGGACACCATCATCCACAAAAACCCAGCCTTGTTCCCTCAGGCTGCAACGGGCAGTAGGTTGGGGGACTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CCA 90 bp | ACAGAGCCATTTGTTCCTTGTCCAGCCTCCCCCAGAATGCCGTCTTaGTTTGAATTCCTGGAGCGGTGTGGGGCAACCATCTGTATGACG | + |
|
Preference number: 5 (lower is better) Translates to: TEPFVPCPASPRMPS*FEFLERCGATICMT Trigger: CGTCATACAGATGGTTGCCCCACACCGCTCCAGGAATTCAAACCAAGACGGCATTCTGGGGGAGGCTGGACAAGGAACAAATGGCTCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS TCA 90 bp | CATTCCATGTATACAGCAGGTGTTCAGTACAGATCTGTTGGATGTTaGATACGGGTGTGGCAGAATATTCCAGTAGAACCAAGCAGCCTA | + |
|
Preference number: 5 (lower is better) Translates to: HSMYTAGVQYRSVGC*IRVWQNIPVEPSSL Trigger: TAGGCTGCTTGGTTCTACTGGAATATTCTGCCACACCCGTATTCAACATCCAACAGATCTGTACTGAACACCTGCTGTATACATGGAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS TCA 90 bp | ATCCTGTTCATTTGCTGGGCAGGAACAGCTGTCAGACAGTACATTTaGTGGCTTTTCACAGAATCAGTCCTGCCTTTGAAATTATATTCT | + |
|
Preference number: 5 (lower is better) Translates to: ILFICWAGTAVRQYI*WLFTESVLPLKLYS Trigger: AGAATATAATTTCAAAGGCAGGACTGATTCTGTGAAAAGCCATCAAATGTACTGTCTGACAGCTGTTCCTGCCCAGCAAATGAACAGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CCA 90 bp | TTAGAATCATTCCATGTATACAGCAGGTGTTCAGTACAGATCTGTTaGATGTTGAATACGGGTGTGGCAGAATATTCCAGTAGAACCAAG | + |
|
Preference number: 5 (lower is better) Translates to: LESFHVYSRCSVQIC*MLNTGVAEYSSRTK Trigger: CTTGGTTCTACTGGAATATTCTGCCACACCCGTATTCAACATCCAACAGATCTGTACTGAACACCTGCTGTATACATGGAATGATTCTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS TCA 90 bp | TATATGTATCATGGCTCAATTCCTCTCGGAGAGGGTTTGTCTAAGTaGCCTATCTCAAATATTGCTCCTATCACAAGTGGTTTAATTTAC | + |
|
Preference number: 5 (lower is better) Translates to: YMYHGSIPLGEGLSK*PISNIAPITSGLIY Trigger: GTAAATTAAACCACTTGTGATAGGAGCAATATTTGAGATAGGTCACTTAGACAAACCCTCTCCGAGAGGAATTGAGCCATGATACATATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS TCA 90 bp | TCAGACAGTACATTTGATGGCTTTTCACAGAATCAGTCCTGCCTTTaGAATTATATTCTAAAAGCTCTTAGATGTCCATATCCACATTTC | + |
|
Preference number: 5 (lower is better) Translates to: SDSTFDGFSQNQSCL*NYILKALRCPYPHF Trigger: GAAATGTGGATATGGACATCTAAGAGCTTTTAGAATATAATTTCAAAGGCAGGACTGATTCTGTGAAAAGCCATCAAATGTACTGTCTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS GCA 72 bp | CAGAGCCATTTGTTCCTTGTCCAGCCTCCCCCAGAATaGCGTCTTGGTTTGAATTCCTGGAGCGGTGTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: QSHLFLVQPPPE*RLGLNSWSGVG Trigger: CCCCACACCGCTCCAGGAATTCAAACCAAGACGGCATTCTGGGGGAGGCTGGACAAGGAACAAATGGCTCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CCA 72 bp | CAACCTACTGCCCGTTGCAGCCTGAGGGAACAAGGCTaGGTTTTTGTGGATGATGGTGTCCTGACGCAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: QPTARCSLREQG*VFVDDGVLTQV Trigger: GACCTGCGTCAGGACACCATCATCCACAAAAACCCAGCCTTGTTCCCTCAGGCTGCAACGGGCAGTAGGTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CAA 72 bp | TTCCTTGTCCAGCCTCCCCCAGAATGCCGTCTTGGTTaGAATTCCTGGAGCGGTGTGGGGCAACCATCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: FLVQPPPECRLG*NSWSGVGQPSV Trigger: TACAGATGGTTGCCCCACACCGCTCCAGGAATTCAAACCAAGACGGCATTCTGGGGGAGGCTGGACAAGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS GCA 72 bp | TCCCTTGTTAAAGTAGTCCCCCAACCTACTGCCCGTTaGAGCCTGAGGGAACAAGGCTGGGTTTTTGTGGAT | + |
|
Preference number: 6 (lower is better) Translates to: SLVKVVPQPTAR*SLREQGWVFVD Trigger: ATCCACAAAAACCCAGCCTTGTTCCCTCAGGCTGCAACGGGCAGTAGGTTGGGGGACTACTTTAACAAGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CAA 72 bp | CATTTGCTGGGCAGGAACAGCTGTCAGACAGTACATTaGATGGCTTTTCACAGAATCAGTCCTGCCTTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: HLLGRNSCQTVH*MAFHRISPAFE Trigger: TTCAAAGGCAGGACTGATTCTGTGAAAAGCCATCAAATGTACTGTCTGACAGCTGTTCCTGCCCAGCAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CAA 72 bp | ATTTCCTCAGAAAGCATGGGAGATTTTGCCTGTCCGTaGTTGCCATCGTTTTCCCTTGTTAAAGTAGTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: ISSESMGDFACP*LPSFSLVKVVP Trigger: GGGGACTACTTTAACAAGGGAAAACGATGGCAACAACGGACAGGCAAAATCTCCCATGCTTTCTGAGGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CAA 90 bp | CCAGCGACCACTGTCATAGGCTACGTGGTTTTCTGTTTTGAGGTTTaGAGTTACATTTCTGTTGCTTCCTGGTCAACTCTGTACATCTCA | + |
|
Preference number: 6 (lower is better) Translates to: PATTVIGYVVFCFEV*SYISVASWSTLYIS Trigger: TGAGATGTACAGAGTTGACCAGGAAGCAACAGAAATGTAACTCAAAACCTCAAAACAGAAAACCACGTAGCCTATGACAGTGGTCGCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CAA 90 bp | TCATTCCATGTATACAGCAGGTGTTCAGTACAGATCTGTTGGATGTaGAATACGGGTGTGGCAGAATATTCCAGTAGAACCAAGCAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: SFHVYSRCSVQICWM*NTGVAEYSSRTKQP Trigger: AGGCTGCTTGGTTCTACTGGAATATTCTGCCACACCCGTATTCAACATCCAACAGATCTGTACTGAACACCTGCTGTATACATGGAATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CAA 72 bp | GTATACAGCAGGTGTTCAGTACAGATCTGTTGGATGTaGAATACGGGTGTGGCAGAATATTCCAGTAGAACC | + |
|
Preference number: 6 (lower is better) Translates to: VYSRCSVQICWM*NTGVAEYSSRT Trigger: GGTTCTACTGGAATATTCTGCCACACCCGTATTCAACATCCAACAGATCTGTACTGAACACCTGCTGTATAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS TCA 72 bp | TATACAGCAGGTGTTCAGTACAGATCTGTTGGATGTTaGATACGGGTGTGGCAGAATATTCCAGTAGAACCA | + |
|
Preference number: 6 (lower is better) Translates to: YTAGVQYRSVGC*IRVWQNIPVEP Trigger: TGGTTCTACTGGAATATTCTGCCACACCCGTATTCAACATCCAACAGATCTGTACTGAACACCTGCTGTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CAA 72 bp | ATTCCATGTATACAGCAGGTGTTCAGTACAGATCTGTaGGATGTTGAATACGGGTGTGGCAGAATATTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: IPCIQQVFSTDL*DVEYGCGRIFQ Trigger: CTGGAATATTCTGCCACACCCGTATTCAACATCCAACAGATCTGTACTGAACACCTGCTGTATACATGGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CAA 72 bp | AAATTCGGGCTCCATTGTATTGTGTCTGTCCTGCAATaGACTCACAGTGAGTTATCTTGTAGAAAAGTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: KFGLHCIVSVLQ*THSELSCRKVA Trigger: TGCCACTTTTCTACAAGATAACTCACTGTGAGTCAATTGCAGGACAGACACAATACAATGGAGCCCGAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS CAA 90 bp | TATCCTGTTCATTTGCTGGGCAGGAACAGCTGTCAGACAGTACATTaGATGGCTTTTCACAGAATCAGTCCTGCCTTTGAAATTATATTC | + |
|
Preference number: 6 (lower is better) Translates to: YPVHLLGRNSCQTVH*MAFHRISPAFEIIF Trigger: GAATATAATTTCAAAGGCAGGACTGATTCTGTGAAAAGCCATCAAATGTACTGTCTGACAGCTGTTCCTGCCCAGCAAATGAACAGGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||
| CDS TCA 72 bp | ACCTTAAAGATGATATGTATTGGTCGTACTGATTCCTaGATGCATCTGTATTTCCTAAGGCTTTTCTGTCCT | + |
|
Preference number: 6 (lower is better) Translates to: TLKMICIGRTDS*MHLYFLRLFCP Trigger: AGGACAGAAAAGCCTTAGGAAATACAGATGCATTCAGGAATCAGTACGACCAATACATATCATCTTTAAGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433766.1 |
||