Pregenerated sensors for LINC01438 (Homo sapiens)

Ensembl gene IDs: ENSG00000249519

Ensembl transcript IDs: ENST00000512794.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GAGGACATCCCCTTTCTCATCAGAGAATTTGCCATTTGGATTCACTaGGTAACTAACTGCCTTCTCATAGCTATGATTCCTTTATCCAAA	+
Preference number: 5 (lower is better) Translates to: EDIPFLIREFAIWIH*VTNCLLIAMIPLSK Trigger: TTTGGATAAAGGAATCATAGCTATGAGAAGGCAGTTAGTTACTCAGTGAATCCAAATGGCAAATTCTCTGATGAGAAAGGGGATGTCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512794.1
CDS GCA 72 bp	CACTATTTGATAGCCTCAGAGCTGAAACGGCTGTTATaGACCACTCATCACCAACAGTGTCAGAAGTTGTAT	+
Preference number: 6 (lower is better) Translates to: HYLIASELKRLL*TTHHQQCQKLY Trigger: ATACAACTTCTGACACTGTTGGTGATGAGTGGTGCATAACAGCCGTTTCAGCTCTGAGGCTATCAAATAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512794.1
CDS CAA 72 bp	AAACTGAAATTCCCCACATTGTATCAAATTGAAACCTaGTTACTTAATCTTTACATTGTCTTCCTTGGGGGT	+
Preference number: 6 (lower is better) Translates to: KLKFPTLYQIET*LLNLYIVFLGG Trigger: ACCCCCAAGGAAGACAATGTAAAGATTAAGTAACAAGGTTTCAATTTGATACAATGTGGGGAATTTCAGTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000512794.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu