Pregenerated sensors for LINC01436 (Homo sapiens)

Ensembl gene IDs: ENSG00000231106

Ensembl transcript IDs: ENST00000457157.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCAAGCCATCTGCTTAGCTGTGTTCTGACCAGGGCCTTGGGGATATaGATGACCAGCATGGGTTCTAGAGTGGGCTTCCCCGGGTTTGAG	+
Preference number: 5 (lower is better) Translates to: PSHLLSCVLTRALGI*MTSMGSRVGFPGFE Trigger: CTCAAACCCGGGGAAGCCCACTCTAGAACCCATGCTGGTCATCCATATCCCCAAGGCCCTGGTCAGAACACAGCTAAGCAGATGGCTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS TCA 90 bp	GTGACTGTGGAAAGTTTCCATCCATCCTGTGCCCCACCTCCTCATTaGAAAACAGAACACCTGTTGGCTTGGCTTGACCTCCTGGCTTCA	+
Preference number: 5 (lower is better) Translates to: VTVESFHPSCAPPPH*KTEHLLAWLDLLAS Trigger: TGAAGCCAGGAGGTCAAGCCAAGCCAACAGGTGTTCTGTTTTTCAATGAGGAGGTGGGGCACAGGATGGATGGAAACTTTCCACAGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS CAA 90 bp	CCTGATGACCCAAGCCATCTGCTTAGCTGTGTTCTGACCAGGGCCTaGGGGATATGGATGACCAGCATGGGTTCTAGAGTGGGCTTCCCC	+
Preference number: 6 (lower is better) Translates to: PDDPSHLLSCVLTRA*GIWMTSMGSRVGFP Trigger: GGGGAAGCCCACTCTAGAACCCATGCTGGTCATCCATATCCCCAAGGCCCTGGTCAGAACACAGCTAAGCAGATGGCTTGGGTCATCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS CCA 72 bp	CTGCTTAGCTGTGTTCTGACCAGGGCCTTGGGGATATaGATGACCAGCATGGGTTCTAGAGTGGGCTTCCCC	+
Preference number: 6 (lower is better) Translates to: LLSCVLTRALGI*MTSMGSRVGFP Trigger: GGGGAAGCCCACTCTAGAACCCATGCTGGTCATCCATATCCCCAAGGCCCTGGTCAGAACACAGCTAAGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS CAA 72 bp	CCAAGCCATCTGCTTAGCTGTGTTCTGACCAGGGCCTaGGGGATATGGATGACCAGCATGGGTTCTAGAGTG	+
Preference number: 6 (lower is better) Translates to: PSHLLSCVLTRA*GIWMTSMGSRV Trigger: CACTCTAGAACCCATGCTGGTCATCCATATCCCCAAGGCCCTGGTCAGAACACAGCTAAGCAGATGGCTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS CAA 90 bp	TGCCAAAGAGAAAAGCACGTTAATGCTTTCTGCAAGGCTCTTGGATaGGTCGGAACCCTGAGAGCGCGCCAACAAGCAAAACAAGGCGGT	+
Preference number: 6 (lower is better) Translates to: CQREKHVNAFCKALG*VGTLRARQQAKQGG Trigger: ACCGCCTTGTTTTGCTTGTTGGCGCGCTCTCAGGGTTCCGACCAATCCAAGAGCCTTGCAGAAAGCATTAACGTGCTTTTCTCTTTGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS TCA 72 bp	GAAAGTTTCCATCCATCCTGTGCCCCACCTCCTCATTaGAAAACAGAACACCTGTTGGCTTGGCTTGACCTC	+
Preference number: 6 (lower is better) Translates to: ESFHPSCAPPPH*KTEHLLAWLDL Trigger: GAGGTCAAGCCAAGCCAACAGGTGTTCTGTTTTTCAATGAGGAGGTGGGGCACAGGATGGATGGAAACTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS CAA 72 bp	GAAAAGCACGTTAATGCTTTCTGCAAGGCTCTTGGATaGGTCGGAACCCTGAGAGCGCGCCAACAAGCAAAA	+
Preference number: 6 (lower is better) Translates to: EKHVNAFCKALG*VGTLRARQQAK Trigger: TTTTGCTTGTTGGCGCGCTCTCAGGGTTCCGACCAATCCAAGAGCCTTGCAGAAAGCATTAACGTGCTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS TCA 72 bp	AAGCTGGACATTCTTTCTCAGGTCACCAGCCCAGCCTaGAAGACTAGCTCTTCCTGCAACATCTTTCTCTTG	+
Preference number: 6 (lower is better) Translates to: KLDILSQVTSPA*KTSSSCNIFLL Trigger: CAAGAGAAAGATGTTGCAGGAAGAGCTAGTCTTTCAGGCTGGGCTGGTGACCTGAGAAAGAATGTCCAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS CAA 90 bp	AAGATACTGAGAAATCAGGTAGCTTCACTGGCTGGTAGGGGACTTTaGCTTTTGAAACGTCACAGGCTGTCTTCCTTTGGATGTAATGGA	+
Preference number: 6 (lower is better) Translates to: KILRNQVASLAGRGL*LLKRHRLSSFGCNG Trigger: TCCATTACATCCAAAGGAAGACAGCCTGTGACGTTTCAAAAGCAAAAGTCCCCTACCAGCCAGTGAAGCTACCTGATTTCTCAGTATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS TCA 72 bp	ACTAGCTCTTCCTGCAACATCTTTCTCTTGAGTGCATaGAGGAGAATCTCACGTTGGTCTATCTCCTTGCAT	+
Preference number: 6 (lower is better) Translates to: TSSSCNIFLLSA*RRISRWSISLH Trigger: ATGCAAGGAGATAGACCAACGTGAGATTCTCCTTCATGCACTCAAGAGAAAGATGTTGCAGGAAGAGCTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS GCA 72 bp	TTTCCTGTTTTAGTCTTCCACGCCTGGCTCTTGATATaGCAAGTGGAGAAGAAAAGCTGGACATTCTTTCTC	+
Preference number: 6 (lower is better) Translates to: FPVLVFHAWLLI*QVEKKSWTFFL Trigger: GAGAAAGAATGTCCAGCTTTTCTTCTCCACTTGGCATATCAAGAGCCAGGCGTGGAAGACTAAAACAGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS GCA 72 bp	GTGCATGAAGGAGAATCTCACGTTGGTCTATCTCCTTaGATTCTTTCTGTATTCCTTATGTTTCCACTAGGC	+
Preference number: 6 (lower is better) Translates to: VHEGESHVGLSP*ILSVFLMFPLG Trigger: GCCTAGTGGAAACATAAGGAATACAGAAAGAATGCAAGGAGATAGACCAACGTGAGATTCTCCTTCATGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457157.2
CDS CAA 72 bp	CATCTTTCTCTTGAGTGCATGAAGGAGAATCTCACGTaGGTCTATCTCCTTGCATTCTTTCTGTATTCCTTA	+
Preference number: 6 (lower is better) Translates to: HLSLECMKENLT*VYLLAFFLYSL Trigger: TAAGGAATACAGAAAGAATGCAAGGAGATAGACCAACGTGAGATTCTCCTTCATGCACTCAAGAGAAAGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457157.2

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