Pregenerated sensors for LINC01431 (Homo sapiens)
Ensembl gene IDs: ENSG00000232645Ensembl transcript IDs: ENST00000442440.1, ENST00000444981.5, ENST00000452395.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGCAGCTTCGCAAAGGAGCTGGGTAAAACCACGCCCAGACCCCGCTaGCCACCAGCCCGAGACCAAGACGCAGGCGGTGGCGCCGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: SSFAKELGKTTPRPR*PPARDQDAGGGAGF Trigger: GAAACCGGCGCCACCGCCTGCGTCTTGGTCTCGGGCTGGTGGCCAGCGGGGTCTGGGCGTGGTTTTACCCAGCTCCTTTGCGAAGCTGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452395.1 |
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| CDS CCA 90 bp | CCGGGTGGTAACGTTGAGGAAAGGACAGCAGCTTCGCAAAGGAGCTaGGTAAAACCACGCCCAGACCCCGCTGGCCACCAGCCCGAGACC | + |
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Preference number: 5 (lower is better) Translates to: PGGNVEERTAASQRS*VKPRPDPAGHQPET Trigger: GGTCTCGGGCTGGTGGCCAGCGGGGTCTGGGCGTGGTTTTACCCAGCTCCTTTGCGAAGCTGCTGTCCTTTCCTCAACGTTACCACCCGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452395.1 |
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| CDS CCA 90 bp | AGAACAACAAGAAATCAAGCTTCTGAATGTGGTCTGTTGCAAGCTTaGAAGGTGCACACCTGTTGCTGCGAGGGTAGGCTGCCCAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: RTTRNQASECGLLQA*KVHTCCCEGRLPSR Trigger: CCGGCTGGGCAGCCTACCCTCGCAGCAACAGGTGTGCACCTTCCAAGCTTGCAACAGACCACATTCAGAAGCTTGATTTCTTGTTGTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442440.1 ENST00000452395.1 |
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| CDS CCA 90 bp | TCCAGGTCCCGGAGTAGTGGTGACAGCAAGGTCTGTTGGTTTCTTTaGTTTAGGTTTGATGAAAGGCCACTCCAGTGGGGTAGGAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: SRSRSSGDSKVCWFL*FRFDERPLQWGRRW Trigger: CCACCTCCTACCCCACTGGAGTGGCCTTTCATCAAACCTAAACCAAAGAAACCAACAGACCTTGCTGTCACCACTACTCCGGGACCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442440.1 |
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| CDS CCA 90 bp | GCAGTGCGAGTTCTTATAGTGGCCACGTCCACAAACCCTGTGTTGTaGAAGAACAGAAGGCGTTCTGCTTTCTGTGTTTCACCGTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: AVRVLIVATSTNPVL*KNRRRSAFCVSPSL Trigger: GAGAGACGGTGAAACACAGAAAGCAGAACGCCTTCTGTTCTTCCACAACACAGGGTTTGTGGACGTGGCCACTATAAGAACTCGCACTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442440.1 ENST00000444981.5 |
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| CDS CCA 90 bp | GCTTTAACTTCCAGGTCCCGGAGTAGTGGTGACAGCAAGGTCTGTTaGTTTCTTTGGTTTAGGTTTGATGAAAGGCCACTCCAGTGGGGT | + |
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Preference number: 5 (lower is better) Translates to: ALTSRSRSSGDSKVC*FLWFRFDERPLQWG Trigger: ACCCCACTGGAGTGGCCTTTCATCAAACCTAAACCAAAGAAACCAACAGACCTTGCTGTCACCACTACTCCGGGACCTGGAAGTTAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442440.1 |
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| CDS CCA 72 bp | GCAAAGGAGCTGGGTAAAACCACGCCCAGACCCCGCTaGCCACCAGCCCGAGACCAAGACGCAGGCGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: AKELGKTTPRPR*PPARDQDAGGG Trigger: GCCACCGCCTGCGTCTTGGTCTCGGGCTGGTGGCCAGCGGGGTCTGGGCGTGGTTTTACCCAGCTCCTTTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452395.1 |
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| CDS CAA 72 bp | TGCTGCGAGGGTAGGCTGCCCAGCCGGGTGGTAACGTaGAGGAAAGGACAGCAGCTTCGCAAAGGAGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: CCEGRLPSRVVT*RKGQQLRKGAG Trigger: CCCAGCTCCTTTGCGAAGCTGCTGTCCTTTCCTCAACGTTACCACCCGGCTGGGCAGCCTACCCTCGCAGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452395.1 |
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| CDS CCA 72 bp | AACGTTGAGGAAAGGACAGCAGCTTCGCAAAGGAGCTaGGTAAAACCACGCCCAGACCCCGCTGGCCACCAG | + |
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Preference number: 6 (lower is better) Translates to: NVEERTAASQRS*VKPRPDPAGHQ Trigger: CTGGTGGCCAGCGGGGTCTGGGCGTGGTTTTACCCAGCTCCTTTGCGAAGCTGCTGTCCTTTCCTCAACGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452395.1 |
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| CDS CCA 72 bp | GGAATCTGCACATTAGGAAGAGACCCCACGAGGCGGTaGCGTTCTTTCTCGTTCGGAGCTCACACCCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: GICTLGRDPTRR*RSFSFGAHTPP Trigger: AGGAGGGGTGTGAGCTCCGAACGAGAAAGAACGCCACCGCCTCGTGGGGTCTCTTCCTAATGTGCAGATTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000444981.5 |
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| CDS CCA 72 bp | GTCCTGGGGGTGGAGGAGATGACGGGGAGAGTGGCTTaGAGAAATCTGCAAGAAGAGACATTGGAAGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: VLGVEEMTGRVA*RNLQEETLEGR Trigger: CCGGCCTTCCAATGTCTCTTCTTGCAGATTTCTCCAAGCCACTCTCCCCGTCATCTCCTCCACCCCCAGGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452395.1 |
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| CDS GCA 72 bp | AAGCTTCTGAATGTGGTCTGTTGCAAGCTTGGAAGGTaGACACCTGTTGCTGCGAGGGTAGGCTGCCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: KLLNVVCCKLGR*TPVAARVGCPA Trigger: GGCTGGGCAGCCTACCCTCGCAGCAACAGGTGTGCACCTTCCAAGCTTGCAACAGACCACATTCAGAAGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442440.1 ENST00000452395.1 |
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| CDS CAA 90 bp | CACGCAGTGCGAGTTCTTATAGTGGCCACGTCCACAAACCCTGTGTaGTGGAAGAACAGAAGGCGTTCTGCTTTCTGTGTTTCACCGTCT | + |
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Preference number: 6 (lower is better) Translates to: HAVRVLIVATSTNPV*WKNRRRSAFCVSPS Trigger: AGACGGTGAAACACAGAAAGCAGAACGCCTTCTGTTCTTCCACAACACAGGGTTTGTGGACGTGGCCACTATAAGAACTCGCACTGCGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442440.1 ENST00000444981.5 |
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| CDS CCA 72 bp | AGAAATCAAGCTTCTGAATGTGGTCTGTTGCAAGCTTaGAAGGTGCACACCTGTTGCTGCGAGGGTAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RNQASECGLLQA*KVHTCCCEGRL Trigger: CAGCCTACCCTCGCAGCAACAGGTGTGCACCTTCCAAGCTTGCAACAGACCACATTCAGAAGCTTGATTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442440.1 ENST00000452395.1 |
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| CDS CAA 72 bp | GTGACAGCAAGGTCTGTTGGTTTCTTTGGTTTAGGTTaGATGAAAGGCCACTCCAGTGGGGTAGGAGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: VTARSVGFFGLG*MKGHSSGVGGG Trigger: CCCACCTCCTACCCCACTGGAGTGGCCTTTCATCAAACCTAAACCAAAGAAACCAACAGACCTTGCTGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000442440.1 ENST00000452395.1 |
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| CDS CCA 72 bp | TCCAGGTCCCGGAGTAGTGGTGACAGCAAGGTCTGTTaGTTTCTTTGGTTTAGGTTTGATGAAAGGCCACTC | + |
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Preference number: 6 (lower is better) Translates to: SRSRSSGDSKVC*FLWFRFDERPL Trigger: GAGTGGCCTTTCATCAAACCTAAACCAAAGAAACCAACAGACCTTGCTGTCACCACTACTCCGGGACCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000442440.1 |
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| CDS CAA 72 bp | CGAGTTCTTATAGTGGCCACGTCCACAAACCCTGTGTaGTGGAAGAACAGAAGGCGTTCTGCTTTCTGTGTT | + |
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Preference number: 6 (lower is better) Translates to: RVLIVATSTNPV*WKNRRRSAFCV Trigger: AACACAGAAAGCAGAACGCCTTCTGTTCTTCCACAACACAGGGTTTGTGGACGTGGCCACTATAAGAACTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442440.1 ENST00000444981.5 |
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| CDS GCA 72 bp | AAGCTTCTGAATGTGGTCTGTTGCAAGCTTGGAAGGTaGACACCTGTTGCTGCTCTTTTGCAGCATTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: KLLNVVCCKLGR*TPVAALLQHCR Trigger: TCTACAATGCTGCAAAAGAGCAGCAACAGGTGTGCACCTTCCAAGCTTGCAACAGACCACATTCAGAAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000444981.5 |
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| CDS CCA 72 bp | GTTCTTATAGTGGCCACGTCCACAAACCCTGTGTTGTaGAAGAACAGAAGGCGTTCTGCTTTCTGTGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: VLIVATSTNPVL*KNRRRSAFCVS Trigger: TGAAACACAGAAAGCAGAACGCCTTCTGTTCTTCCACAACACAGGGTTTGTGGACGTGGCCACTATAAGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000442440.1 ENST00000444981.5 |
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| CDS TCA 72 bp | GTGAAGCTGAGGAGTCCTAGTGAACCATGTTACCTCTaGTCCAGATATTCCCAGAACAACAAGAAATCAAGC | + |
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Preference number: 6 (lower is better) Translates to: VKLRSPSEPCYL*SRYSQNNKKSS Trigger: GCTTGATTTCTTGTTGTTCTGGGAATATCTGGATCAGAGGTAACATGGTTCACTAGGACTCCTCAGCTTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452395.1 |
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