Pregenerated sensors for LINC01425 (Homo sapiens)
Ensembl gene IDs: ENSG00000233997Ensembl transcript IDs: ENST00000425979.5, ENST00000430060.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AACCACACCTCCTCCCTGGTAGGTAGACCCGTTGGGTCACATCTCTaGATCACTAGTTCCACATGTCTGGGGAGGCCTCAGAATCATGGC | + |
|
Preference number: 5 (lower is better) Translates to: NHTSSLVGRPVGSHL*ITSSTCLGRPQNHG Trigger: GCCATGATTCTGAGGCCTCCCCAGACATGTGGAACTAGTGATGCAGAGATGTGACCCAACGGGTCTACCTACCAGGGAGGAGGTGTGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000425979.5 |
||
| CDS GCA 90 bp | GTGGTTTCCTCATTCTTGGGCTTGTGGCAGTACAACTCCAATCTTTaGCTTTGTCTTTCTATGGCCTTCTTCCCTCTGTGTGTCTGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: VVSSFLGLWQYNSNL*LCLSMAFFPLCVCV Trigger: GACACAGACACACAGAGGGAAGAAGGCCATAGAAAGACAAAGGCAAAGATTGGAGTTGTACTGCCACAAGCCCAAGAATGAGGAAACCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS CCA 90 bp | GACCAATCCAGGGACGAATCCTTGCTTGTTTCTTCTAGCTCCTGGTaGTTTCCTCATTCTTGGGCTTGTGGCAGTACAACTCCAATCTTT | + |
|
Preference number: 5 (lower is better) Translates to: DQSRDESLLVSSSSW*FPHSWACGSTTPIF Trigger: AAAGATTGGAGTTGTACTGCCACAAGCCCAAGAATGAGGAAACCACCAGGAGCTAGAAGAAACAAGCAAGGATTCGTCCCTGGATTGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS GCA 90 bp | CTTCTTCTCCTTGAACAACTCTTCTTTTGTCTGCCTCAGAAAGCATaGATTCCTGGAAAGGGATGTGTTTCAGAAGCAGGGAGAAAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: LLLLEQLFFCLPQKA*IPGKGCVSEAGRKP Trigger: TGGCTTTCTCCCTGCTTCTGAAACACATCCCTTTCCAGGAATGCATGCTTTCTGAGGCAGACAAAAGAAGAGTTGTTCAAGGAGAAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS CAA 90 bp | AGCAGGGCCATGCTCCCTTTGAAAGACCAATCCAGGGACGAATCCTaGCTTGTTTCTTCTAGCTCCTGGTGGTTTCCTCATTCTTGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: SRAMLPLKDQSRDES*LVSSSSWWFPHSWA Trigger: AGCCCAAGAATGAGGAAACCACCAGGAGCTAGAAGAAACAAGCAAGGATTCGTCCCTGGATTGGTCTTTCAAAGGGAGCATGGCCCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS CCA 72 bp | TCCAGGGACGAATCCTTGCTTGTTTCTTCTAGCTCCTaGTGGTTTCCTCATTCTTGGGCTTGTGGCAGTACA | + |
|
Preference number: 6 (lower is better) Translates to: SRDESLLVSSSS*WFPHSWACGST Trigger: TGTACTGCCACAAGCCCAAGAATGAGGAAACCACCAGGAGCTAGAAGAAACAAGCAAGGATTCGTCCCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS CCA 72 bp | AGGGACGAATCCTTGCTTGTTTCTTCTAGCTCCTGGTaGTTTCCTCATTCTTGGGCTTGTGGCAGTACAACT | + |
|
Preference number: 6 (lower is better) Translates to: RDESLLVSSSSW*FPHSWACGSTT Trigger: AGTTGTACTGCCACAAGCCCAAGAATGAGGAAACCACCAGGAGCTAGAAGAAACAAGCAAGGATTCGTCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS CAA 72 bp | CTTGGGCTTGTGGCAGTACAACTCCAATCTTTGCCTTaGTCTTTCTATGGCCTTCTTCCCTCTGTGTGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: LGLVAVQLQSLP*SFYGLLPSVCL Trigger: CAGACACACAGAGGGAAGAAGGCCATAGAAAGACAAAGGCAAAGATTGGAGTTGTACTGCCACAAGCCCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS CAA 72 bp | ATGCTCCCTTTGAAAGACCAATCCAGGGACGAATCCTaGCTTGTTTCTTCTAGCTCCTGGTGGTTTCCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: MLPLKDQSRDES*LVSSSSWWFPH Trigger: ATGAGGAAACCACCAGGAGCTAGAAGAAACAAGCAAGGATTCGTCCCTGGATTGGTCTTTCAAAGGGAGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS TCA 72 bp | TTTTCTGGAGGACAGCAGTCCCCGTCTTATTATAAGTaGGATAGGCCAACACAGGATTTGGCCAAGAGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: FSGGQQSPSYYK*DRPTQDLAKRK Trigger: TTTCCTCTTGGCCAAATCCTGTGTTGGCCTATCTCACTTATAATAAGACGGGGACTGCTGTCCTCCAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000430060.1 |
||
| CDS TCA 72 bp | TCTGAAATTAAAGTGTCAGCAGGGCCATGCTCCCTTTaGAAGACCAATCCAGGGACGAATCCTTGCTTGTTT | + |
|
Preference number: 6 (lower is better) Translates to: SEIKVSAGPCSL*KTNPGTNPCLF Trigger: AAACAAGCAAGGATTCGTCCCTGGATTGGTCTTTCAAAGGGAGCATGGCCCTGCTGACACTTTAATTTCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS GCA 72 bp | TCATTCTTGGGCTTGTGGCAGTACAACTCCAATCTTTaGCTTTGTCTTTCTATGGCCTTCTTCCCTCTGTGT | + |
|
Preference number: 6 (lower is better) Translates to: SFLGLWQYNSNL*LCLSMAFFPLC Trigger: ACACAGAGGGAAGAAGGCCATAGAAAGACAAAGGCAAAGATTGGAGTTGTACTGCCACAAGCCCAAGAATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS CCA 72 bp | CTTGTTTCTTCTAGCTCCTGGTGGTTTCCTCATTCTTaGGCTTGTGGCAGTACAACTCCAATCTTTGCCTTT | + |
|
Preference number: 6 (lower is better) Translates to: LVSSSSWWFPHS*ACGSTTPIFAF Trigger: AAAGGCAAAGATTGGAGTTGTACTGCCACAAGCCCAAGAATGAGGAAACCACCAGGAGCTAGAAGAAACAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425979.5 ENST00000430060.1 |
||
| CDS TCA 72 bp | ACATCTCTGCATCACTCTTTATGTGAATTGTATCTATaGTCAGCCCATGTATTCAGCATATGCCATGAAGAA | + |
|
Preference number: 6 (lower is better) Translates to: TSLHHSLCELYL*SAHVFSICHEE Trigger: TTCTTCATGGCATATGCTGAATACATGGGCTGATCATAGATACAATTCACATAAAGAGTGATGCAGAGATGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430060.1 |
||