RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01423 (Homo sapiens)

Ensembl gene IDs: ENSG00000231231

Ensembl transcript IDs: ENST00000414189.5, ENST00000436845.1

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GATTCTCAGGCAAGGGAAGCATACTCCGACGCTGAATTTGCTGGGTaGCTCTGCTCAAGTCAGTTGACCCATCTGTGCCTCCTCTCGTGG +
Preference number: 5 (lower is better)
Translates to: DSQAREAYSDAEFAG*LCSSQLTHLCLLSW
Trigger: CCACGAGAGGAGGCACAGATGGGTCAACTGACTTGAGCAGAGCCACCCAGCAAATTCAGCGTCGGAGTATGCTTCCCTTGCCTGAGAATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS GCA 90 bp GGAGCTGCAGTTATCCAAAGGCTTGATTGGGGCTGGAGAATGCATTaGTCATATAGGAGCCCTCAATTTATTGCTGGTTTCTGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: GAAVIQRLDWGWRMH*SYRSPQFIAGFWLE
Trigger: CTCCAGCCAGAAACCAGCAATAAATTGAGGGCTCCTATATGAGCAATGCATTCTCCAGCCCCAATCAAGCCTTTGGATAACTGCAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS GCA 90 bp TCAGTTGACCCATCTGTGCCTCCTCTCGTGGCCCTTGTTCAGATATaGAGTGATTCCATGACTGATTTTCAGTGTTGGTCTCAAGCATGT +
Preference number: 5 (lower is better)
Translates to: SVDPSVPPLVALVQI*SDSMTDFQCWSQAC
Trigger: ACATGCTTGAGACCAACACTGAAAATCAGTCATGGAATCACTGCATATCTGAACAAGGGCCACGAGAGGAGGCACAGATGGGTCAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS CCA 90 bp GCCCTTGTTCAGATATGCAGTGATTCCATGACTGATTTTCAGTGTTaGTCTCAAGCATGTAGCTGCCACTTGGTGCAGAGCATTAGCATA +
Preference number: 5 (lower is better)
Translates to: ALVQICSDSMTDFQC*SQACSCHLVQSISI
Trigger: TATGCTAATGCTCTGCACCAAGTGGCAGCTACATGCTTGAGACCAACACTGAAAATCAGTCATGGAATCACTGCATATCTGAACAAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS TCA 90 bp CATGTAGCTGCCACTTGGTGCAGAGCATTAGCATATCTTTGTAATTaGGTTCTGAAGGCTGGGAAGTCCAATATCAAGATGCTGGCATCT +
Preference number: 5 (lower is better)
Translates to: HVAATWCRALAYLCN*VLKAGKSNIKMLAS
Trigger: AGATGCCAGCATCTTGATATTGGACTTCCCAGCCTTCAGAACTCAATTACAAAGATATGCTAATGCTCTGCACCAAGTGGCAGCTACATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS CCA 90 bp AGAATGCATTGCTCATATAGGAGCCCTCAATTTATTGCTGGTTTCTaGCTGGAGTTCTCATTTCCTCATCAGATGCTCCTCTTTGTAACG +
Preference number: 5 (lower is better)
Translates to: RMHCSYRSPQFIAGF*LEFSFPHQMLLFVT
Trigger: CGTTACAAAGAGGAGCATCTGATGAGGAAATGAGAACTCCAGCCAGAAACCAGCAATAAATTGAGGGCTCCTATATGAGCAATGCATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS GCA 72 bp GCTGGGTGGCTCTGCTCAAGTCAGTTGACCCATCTGTaGCTCCTCTCGTGGCCCTTGTTCAGATATGCAGTG +
Preference number: 6 (lower is better)
Translates to: AGWLCSSQLTHL*LLSWPLFRYAV
Trigger: CACTGCATATCTGAACAAGGGCCACGAGAGGAGGCACAGATGGGTCAACTGACTTGAGCAGAGCCACCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS GCA 72 bp GTGGGTGGCAAGCTTTGTAGCAACAAGAGGGTGAGGTaGTCCCTGGTTCCTGCAGGAGAATGTGATGGGCTT +
Preference number: 6 (lower is better)
Translates to: VGGKLCSNKRVR*SLVPAGECDGL
Trigger: AAGCCCATCACATTCTCCTGCAGGAACCAGGGAGCACCTCACCCTCTTGTTGCTACAAAGCTTGCCACCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436845.1
CDS CCA 72 bp GCAAGGGAAGCATACTCCGACGCTGAATTTGCTGGGTaGCTCTGCTCAAGTCAGTTGACCCATCTGTGCCTC +
Preference number: 6 (lower is better)
Translates to: AREAYSDAEFAG*LCSSQLTHLCL
Trigger: GAGGCACAGATGGGTCAACTGACTTGAGCAGAGCCACCCAGCAAATTCAGCGTCGGAGTATGCTTCCCTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS CAA 90 bp GCATACTCCGACGCTGAATTTGCTGGGTGGCTCTGCTCAAGTCAGTaGACCCATCTGTGCCTCCTCTCGTGGCCCTTGTTCAGATATGCA +
Preference number: 6 (lower is better)
Translates to: AYSDAEFAGWLCSSQ*THLCLLSWPLFRYA
Trigger: TGCATATCTGAACAAGGGCCACGAGAGGAGGCACAGATGGGTCAACTGACTTGAGCAGAGCCACCCAGCAAATTCAGCGTCGGAGTATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS TCA 72 bp GAGCTGTGCCTGGTCCACTTGATAAGGTGGGTTGCTTaGCTGGAGCCTTATAGTTCTGAAGGCTGGGAAGTC +
Preference number: 6 (lower is better)
Translates to: ELCLVHLIRWVA*LEPYSSEGWEV
Trigger: GACTTCCCAGCCTTCAGAACTATAAGGCTCCAGTCAAGCAACCCACCTTATCAAGTGGACCAGGCACAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436845.1
CDS TCA 72 bp GAGGGTGAGGTGCTCCCTGGTTCCTGCAGGAGAATGTaGTGGGCTTTGAACAATTCCGAGGTTAGCAGGAAA +
Preference number: 6 (lower is better)
Translates to: EGEVLPGSCRRM*WALNNSEVSRK
Trigger: TTTCCTGCTAACCTCGGAATTGTTCAAAGCCCATCACATTCTCCTGCAGGAACCAGGGAGCACCTCACCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436845.1
CDS GCA 72 bp CCATCTGTGCCTCCTCTCGTGGCCCTTGTTCAGATATaGAGTGATTCCATGACTGATTTTCAGTGTTGGTCT +
Preference number: 6 (lower is better)
Translates to: PSVPPLVALVQI*SDSMTDFQCWS
Trigger: AGACCAACACTGAAAATCAGTCATGGAATCACTGCATATCTGAACAAGGGCCACGAGAGGAGGCACAGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS CAA 90 bp ATTGGGGCTGGAGAATGCATTGCTCATATAGGAGCCCTCAATTTATaGCTGGTTTCTGGCTGGAGTTCTCATTTCCTCATCAGATGCTCC +
Preference number: 6 (lower is better)
Translates to: IGAGECIAHIGALNL*LVSGWSSHFLIRCS
Trigger: GGAGCATCTGATGAGGAAATGAGAACTCCAGCCAGAAACCAGCAATAAATTGAGGGCTCCTATATGAGCAATGCATTCTCCAGCCCCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS CAA 72 bp TCAAAATGCTGGCAGGAGCTGCAGTTATCCAAAGGCTaGATTGGGGCTGGAGAATGCATTGCTCATATAGGA +
Preference number: 6 (lower is better)
Translates to: SKCWQELQLSKG*IGAGECIAHIG
Trigger: TCCTATATGAGCAATGCATTCTCCAGCCCCAATCAAGCCTTTGGATAACTGCAGCTCCTGCCAGCATTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS GCA 72 bp CTGCAGTTATCCAAAGGCTTGATTGGGGCTGGAGAATaGATTGCTCATATAGGAGCCCTCAATTTATTGCTG +
Preference number: 6 (lower is better)
Translates to: LQLSKGLIGAGE*IAHIGALNLLL
Trigger: CAGCAATAAATTGAGGGCTCCTATATGAGCAATGCATTCTCCAGCCCCAATCAAGCCTTTGGATAACTGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS CCA 72 bp TGCTCATATAGGAGCCCTCAATTTATTGCTGGTTTCTaGCTGGAGTTCTCATTTCCTCATCAGATGCTCCTC +
Preference number: 6 (lower is better)
Translates to: CSYRSPQFIAGF*LEFSFPHQMLL
Trigger: GAGGAGCATCTGATGAGGAAATGAGAACTCCAGCCAGAAACCAGCAATAAATTGAGGGCTCCTATATGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS GCA 72 bp GTTATCCAAAGGCTTGATTGGGGCTGGAGAATGCATTaGTCATATAGGAGCCCTCAATTTATTGCTGGTTTC +
Preference number: 6 (lower is better)
Translates to: VIQRLDWGWRMH*SYRSPQFIAGF
Trigger: GAAACCAGCAATAAATTGAGGGCTCCTATATGAGCAATGCATTCTCCAGCCCCAATCAAGCCTTTGGATAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS CAA 72 bp GGAGAATGCATTGCTCATATAGGAGCCCTCAATTTATaGCTGGTTTCTGGCTGGAGTTCTCATTTCCTCATC +
Preference number: 6 (lower is better)
Translates to: GECIAHIGALNL*LVSGWSSHFLI
Trigger: GATGAGGAAATGAGAACTCCAGCCAGAAACCAGCAATAAATTGAGGGCTCCTATATGAGCAATGCATTCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000414189.5
CDS TCA 72 bp GCCACTTGGTGCAGAGCATTAGCATATCTTTGTAATTaGGTTCTGAAGGCTGGGAAGTCCAATATCAAGATG +
Preference number: 6 (lower is better)
Translates to: ATWCRALAYLCN*VLKAGKSNIKM
Trigger: CATCTTGATATTGGACTTCCCAGCCTTCAGAACTCAATTACAAAGATATGCTAATGCTCTGCACCAAGTGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000414189.5