Pregenerated sensors for LINC01419 (Homo sapiens)
Ensembl gene IDs: ENSG00000253898Ensembl transcript IDs: ENST00000522365.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGATGTGTTCGGAGTTTCTTCCTTCTGGTGGGTTCGTGGTCTCGCTaGCTCGGGAGTGAAGCTGCAGATCTTCGCGGTGAGTGTTACAGC | + |
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Preference number: 5 (lower is better) Translates to: RCVRSFFLLVGSWSR*LGSEAADLRGECYS Trigger: GCTGTAACACTCACCGCGAAGATCTGCAGCTTCACTCCCGAGCCAGCGAGACCACGAACCCACCAGAAGGAAGAAACTCCGAACACATCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CCA 90 bp | CCTGGGTTTAAGCGGTTCTCCTGCTGGTTGATTGCAGAACTTCCATaGAAGCCACTGAGAGCCAAGAAATTGTGTCCGGAATTGGTGGGT | + |
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Preference number: 5 (lower is better) Translates to: PGFKRFSCWLIAELP*KPLRAKKLCPELVG Trigger: ACCCACCAATTCCGGACACAATTTCTTGGCTCTCAGTGGCTTCCATGGAAGTTCTGCAATCAACCAGCAGGAGAACCGCTTAAACCCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS TCA 90 bp | TACATTTGGGAGAATTCCTCTCTTCTCAAAGTTCTCCAAATACTCTaGGGTCCTTTGTCTGCAACGAAAATATCTTTTTCAGCATCTCTA | + |
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Preference number: 5 (lower is better) Translates to: YIWENSSLLKVLQIL*GPLSATKISFSASL Trigger: TAGAGATGCTGAAAAAGATATTTTCGTTGCAGACAAAGGACCTCAGAGTATTTGGAGAACTTTGAGAAGAGAGGAATTCTCCCAAATGTA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CCA 72 bp | CGGAGTTTCTTCCTTCTGGTGGGTTCGTGGTCTCGCTaGCTCGGGAGTGAAGCTGCAGATCTTCGCGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: RSFFLLVGSWSR*LGSEAADLRGE Trigger: CTCACCGCGAAGATCTGCAGCTTCACTCCCGAGCCAGCGAGACCACGAACCCACCAGAAGGAAGAAACTCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CAA 72 bp | CCTCCGCCTCCTGGGTTTAAGCGGTTCTCCTGCTGGTaGATTGCAGAACTTCCATGGAAGCCACTGAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: PPPPGFKRFSCW*IAELPWKPLRA Trigger: GGCTCTCAGTGGCTTCCATGGAAGTTCTGCAATCAACCAGCAGGAGAACCGCTTAAACCCAGGAGGCGGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS GCA 72 bp | CTGCAACCTCCGCCTCCTGGGTTTAAGCGGTTCTCCTaGTGGTTGATTGCAGAACTTCCATGGAAGCCACTG | + |
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Preference number: 6 (lower is better) Translates to: LQPPPPGFKRFS*WLIAELPWKPL Trigger: CAGTGGCTTCCATGGAAGTTCTGCAATCAACCAGCAGGAGAACCGCTTAAACCCAGGAGGCGGAGGTTGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CCA 72 bp | AGATGTGTTCGGAGTTTCTTCCTTCTGGTGGGTTCGTaGTCTCGCTGGCTCGGGAGTGAAGCTGCAGATCTT | + |
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Preference number: 6 (lower is better) Translates to: RCVRSFFLLVGS*SRWLGSEAADL Trigger: AAGATCTGCAGCTTCACTCCCGAGCCAGCGAGACCACGAACCCACCAGAAGGAAGAAACTCCGAACACATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CCA 72 bp | CAACCTCCGCCTCCTGGGTTTAAGCGGTTCTCCTGCTaGTTGATTGCAGAACTTCCATGGAAGCCACTGAGA | + |
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Preference number: 6 (lower is better) Translates to: QPPPPGFKRFSC*LIAELPWKPLR Trigger: TCTCAGTGGCTTCCATGGAAGTTCTGCAATCAACCAGCAGGAGAACCGCTTAAACCCAGGAGGCGGAGGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CAA 90 bp | GAAGCCACTGAGAGCCAAGAAATTGTGTCCGGAATTGGTGGGTTCTaGGTCTCACTGACTTCAAGAATGAAGCCGTGGACCCTCGCGGTG | + |
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Preference number: 6 (lower is better) Translates to: EATESQEIVSGIGGF*VSLTSRMKPWTLAV Trigger: CACCGCGAGGGTCCACGGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCAATTCCGGACACAATTTCTTGGCTCTCAGTGGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CCA 72 bp | GGGTTCTTGGTCTCACTGACTTCAAGAATGAAGCCGTaGACCCTCGCGGTGAGTGTTACAGCTCTTAAGGTG | + |
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Preference number: 6 (lower is better) Translates to: GFLVSLTSRMKP*TLAVSVTALKV Trigger: CACCTTAAGAGCTGTAACACTCACCGCGAGGGTCCACGGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CAA 90 bp | TCACTGCAACCTCCGCCTCCTGGGTTTAAGCGGTTCTCCTGCTGGTaGATTGCAGAACTTCCATGGAAGCCACTGAGAGCCAAGAAATTG | + |
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Preference number: 6 (lower is better) Translates to: SLQPPPPGFKRFSCW*IAELPWKPLRAKKL Trigger: CAATTTCTTGGCTCTCAGTGGCTTCCATGGAAGTTCTGCAATCAACCAGCAGGAGAACCGCTTAAACCCAGGAGGCGGAGGTTGCAGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS TCA 72 bp | CAGCTCTTAAGGTGGCGTGTCTGGAGTCTGCCCTTCTaGTGTTCAGATGTGTTCGGAGTTTCTTCCTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: QLLRWRVWSLPF*CSDVFGVSSFW Trigger: CCAGAAGGAAGAAACTCCGAACACATCTGAACATCAGAAGGGCAGACTCCAGACACGCCACCTTAAGAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CCA 72 bp | AAGCGGTTCTCCTGCTGGTTGATTGCAGAACTTCCATaGAAGCCACTGAGAGCCAAGAAATTGTGTCCGGAA | + |
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Preference number: 6 (lower is better) Translates to: KRFSCWLIAELP*KPLRAKKLCPE Trigger: TTCCGGACACAATTTCTTGGCTCTCAGTGGCTTCCATGGAAGTTCTGCAATCAACCAGCAGGAGAACCGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CAA 72 bp | GAGAGCCAAGAAATTGTGTCCGGAATTGGTGGGTTCTaGGTCTCACTGACTTCAAGAATGAAGCCGTGGACC | + |
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Preference number: 6 (lower is better) Translates to: ESQEIVSGIGGF*VSLTSRMKPWT Trigger: GGTCCACGGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCAATTCCGGACACAATTTCTTGGCTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS GCA 72 bp | GCGTGGACCCAAAGAGTGAGCAGTAGCAAGATTTATTaGAAAGAGCGAAAGAACAAAGCTTCCACGATGTGG | + |
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Preference number: 6 (lower is better) Translates to: AWTQRVSSSKIY*KERKNKASTMW Trigger: CCACATCGTGGAAGCTTTGTTCTTTCGCTCTTTGCAATAAATCTTGCTACTGCTCACTCTTTGGGTCCACGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS TCA 72 bp | CTACAAAGCAAATCAGGTTTTTCTGAGAGGGATTTATaGGTTTTTGGCTCCAGAAAGTGGACCTCAGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: LQSKSGFSERDL*VFGSRKWTSVL Trigger: AAGAACTGAGGTCCACTTTCTGGAGCCAAAAACTCATAAATCCCTCTCAGAAAAACCTGATTTGCTTTGTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS TCA 72 bp | TTCATGGCTATAGATGAGGATTCTTTTGCATTGCTGTaGATTATCTGCACGGTAAAGAGTGTGAGAGCCAAA | + |
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Preference number: 6 (lower is better) Translates to: FMAIDEDSFALL*IICTVKSVRAK Trigger: TTTGGCTCTCACACTCTTTACCGTGCAGATAATTCACAGCAATGCAAAAGAATCCTCATCTATAGCCATGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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| CDS CAA 72 bp | TCTCTCGACTGTATTTTACCTGTGACACCTATACATTaGGGAGAATTCCTCTCTTCTCAAAGTTCTCCAAAT | + |
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Preference number: 6 (lower is better) Translates to: SLDCILPVTPIH*GEFLSSQSSPN Trigger: ATTTGGAGAACTTTGAGAAGAGAGGAATTCTCCCAAATGTATAGGTGTCACAGGTAAAATACAGTCGAGAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522365.1 |
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