Pregenerated sensors for LINC01416 (Homo sapiens)
Ensembl gene IDs: ENSG00000260930Ensembl transcript IDs: ENST00000563553.1, ENST00000654280.1, ENST00000655696.1
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGGCTGGTTTTAAGGCAGTACAGAGCCCAGCTCCACGAGCTGAGCTaGAAGGAATTTGCTGTCTGTGCCAGAGGTCATAAAGAGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: GLVLRQYRAQLHELS*KEFAVCARGHKELL Trigger: CAGCAGCTCTTTATGACCTCTGGCACAGACAGCAAATTCCTTCCAGCTCAGCTCGTGGAGCTGGGCTCTGTACTGCCTTAAAACCAGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS TCA 90 bp | TCCTGTCATCAAAGAGAGGAGGAGAGGGCGAGCACATTCCGAGTGTaGGCAAGCGGAACCCCTCCTACAGATGTGCCTTTCACTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: SCHQREEERASTFRV*ASGTPPTDVPFTLI Trigger: AATGAGAGTGAAAGGCACATCTGTAGGAGGGGTTCCGCTTGCTCACACTCGGAATGTGCTCGCCCTCTCCTCCTCTCTTTGATGACAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS TCA 90 bp | CTCCCTGTGCCCTACTTTCTGTGGCCATGCCTTCGGCTCTCTCTGTaGCAATCCATTGAACAAGGTTCTTCTAGGCTTCTGCAGCTAGGG | + |
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Preference number: 5 (lower is better) Translates to: LPVPYFLWPCLRLSL*QSIEQGSSRLLQLG Trigger: CCCTAGCTGCAGAAGCCTAGAAGAACCTTGTTCAATGGATTGTCACAGAGAGAGCCGAAGGCATGGCCACAGAAAGTAGGGCACAGGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655696.1 |
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| CDS GCA 90 bp | GCAAGCGGAACCCCTCCTACAGATGTGCCTTTCACTCTCATTTCCTaGTCCAGACCAACCCTTCGGAGATTATTTTCAGGGAGATCTCCC | + |
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Preference number: 5 (lower is better) Translates to: ASGTPPTDVPFTLIS*SRPTLRRLFSGRSP Trigger: GGGAGATCTCCCTGAAAATAATCTCCGAAGGGTTGGTCTGGAGCAGGAAATGAGAGTGAAAGGCACATCTGTAGGAGGGGTTCCGCTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS TCA 90 bp | GGTGCATTGAGAACCATCTTCCTTCAGGCATACTCTGTGGACTTGTaGTTTCGGCACTGGCCCAGTCTAAGTCACAAAGAGCAGACAACT | + |
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Preference number: 5 (lower is better) Translates to: GALRTIFLQAYSVDL*FRHWPSLSHKEQTT Trigger: AGTTGTCTGCTCTTTGTGACTTAGACTGGGCCAGTGCCGAAATCACAAGTCCACAGAGTATGCCTGAAGGAAGATGGTTCTCAATGCACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS GCA 90 bp | GAAAAGGCCCATAAGTCCTCTCAAGCGATTCTCAGCCTTGGCATATaGAGTGGCTTCATTCAGATTCCAGCAAAAAGGAATTGGCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: EKAHKSSQAILSLGI*SGFIQIPAKRNWQG Trigger: GCCCTGCCAATTCCTTTTTGCTGGAATCTGAATGAAGCCACTGCATATGCCAAGGCTGAGAATCGCTTGAGAGGACTTATGGGCCTTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS TCA 90 bp | GGCCTCAGTCATTTGAGGATGAGTGCATTTTCCCAGTGGGTGCATTaGGAACCATCTTCCTTCAGGCATACTCTGTGGACTTGTGATTTC | + |
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Preference number: 5 (lower is better) Translates to: GLSHLRMSAFSQWVH*EPSSFRHTLWTCDF Trigger: GAAATCACAAGTCCACAGAGTATGCCTGAAGGAAGATGGTTCTCAATGCACCCACTGGGAAAATGCACTCATCCTCAAATGACTGAGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS TCA 90 bp | GCAGATAGCTCTCCATTATGCATGAGCTGCTTCTTTGGTTTCGAATaGTCAGTGTCTCCGCTGTTCTTTCTTCTCCCTTCTGTTTCCACC | + |
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Preference number: 5 (lower is better) Translates to: ADSSPLCMSCFFGFE*SVSPLFFLLPSVST Trigger: GGTGGAAACAGAAGGGAGAAGAAAGAACAGCGGAGACACTGATCATTCGAAACCAAAGAAGCAGCTCATGCATAATGGAGAGCTATCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000563553.1 ENST00000654280.1 ENST00000655696.1 |
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| CDS TCA 90 bp | GAAGTACTCCTAGCAATTTGCATGCAGATAGCTCTCCATTATGCATaGGCTGCTTCTTTGGTTTCGAATGATCAGTGTCTCCGCTGTTCT | + |
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Preference number: 5 (lower is better) Translates to: EVLLAICMQIALHYA*AASLVSNDQCLRCS Trigger: AGAACAGCGGAGACACTGATCATTCGAAACCAAAGAAGCAGCTCATGCATAATGGAGAGCTATCTGCATGCAAATTGCTAGGAGTACTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000563553.1 ENST00000654280.1 ENST00000655696.1 |
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| CDS CCA 90 bp | AATCCTCTGAGTTCAGGACTGAAAGAAAGTGAGAAGAATCCCTCCTaGGATGAGATCTTAAAAGGCAAGGAAACAACGGCCTCAGTCATT | + |
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Preference number: 5 (lower is better) Translates to: NPLSSGLKESEKNPS*DEILKGKETTASVI Trigger: AATGACTGAGGCCGTTGTTTCCTTGCCTTTTAAGATCTCATCCCAGGAGGGATTCTTCTCACTTTCTTTCAGTCCTGAACTCAGAGGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS TCA 90 bp | CTGCAGATTCCTGTCTTCTTTCTCTTACCTGTAATGAATCATATCTaGATGATGCTTCCACCGGCCAAGTTCCAAGTGCCATCTTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: LQIPVFFLLPVMNHI*MMLPPAKFQVPSFP Trigger: AGGAAAAGATGGCACTTGGAACTTGGCCGGTGGAAGCATCATTCAGATATGATTCATTACAGGTAAGAGAAAGAAGACAGGAATCTGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS CCA 90 bp | AAAGAGCAGACAACTCTGTCCCCTTTTCCAGAAATATCAGACTTATaGGAAGATTTCTTCTGCAGATTCCTGTCTTCTTTCTCTTACCTG | + |
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Preference number: 5 (lower is better) Translates to: KEQTTLSPFPEISDL*EDFFCRFLSSFSYL Trigger: CAGGTAAGAGAAAGAAGACAGGAATCTGCAGAAGAAATCTTCCCATAAGTCTGATATTTCTGGAAAAGGGGACAGAGTTGTCTGCTCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS GCA 90 bp | GATTCATACGGGATTGCTGTAGGTCTCCAAAGGGATGTAACAAGGTaGTTTATAAACTGTAAGGTGACGTTATTATCTTTGAAGCAAATT | + |
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Preference number: 5 (lower is better) Translates to: DSYGIAVGLQRDVTR*FINCKVTLLSLKQI Trigger: AATTTGCTTCAAAGATAATAACGTCACCTTACAGTTTATAAAGCACCTTGTTACATCCCTTTGGAGACCTACAGCAATCCCGTATGAATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS TCA 90 bp | TCCGATACCTTCATAGAAATTGAGCAGTTATCCAAGCAAGGTCTATaGAGGCCAAATAATGTTTCCAGTTTCTTACCTTTGTATAGAATT | + |
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Preference number: 5 (lower is better) Translates to: SDTFIEIEQLSKQGL*RPNNVSSFLPLYRI Trigger: AATTCTATACAAAGGTAAGAAACTGGAAACATTATTTGGCCTTCATAGACCTTGCTTGGATAACTGCTCAATTTCTATGAAGGTATCGGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS TCA 72 bp | CAAAGAGAGGAGGAGAGGGCGAGCACATTCCGAGTGTaGGCAAGCGGAACCCCTCCTACAGATGTGCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: QREEERASTFRV*ASGTPPTDVPF Trigger: GAAAGGCACATCTGTAGGAGGGGTTCCGCTTGCTCACACTCGGAATGTGCTCGCCCTCTCCTCCTCTCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS TCA 72 bp | GGCGGGGTTGTTGGAGACATGCTGTCGAGAGGTGTCTaGGTCTGCAGAATTTGTGATGATAGCCGGTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: GGVVGDMLSRGV*VCRICDDSRFL Trigger: AAGGAACCGGCTATCATCACAAATTCTGCAGACTCAGACACCTCTCGACAGCATGTCTCCAACAACCCCGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS CAA 90 bp | CTCTCTCCGGGGATAATTTCACCTGGGACATTGAGGAAATGGAGCTaGGAGTATGTGCACTTCCTGTCATCAAAGAGAGGAGGAGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: LSPGIISPGTLRKWS*EYVHFLSSKRGGEG Trigger: GCCCTCTCCTCCTCTCTTTGATGACAGGAAGTGCACATACTCCAAGCTCCATTTCCTCAATGTCCCAGGTGAAATTATCCCCGGAGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS CCA 72 bp | TTAAGGCAGTACAGAGCCCAGCTCCACGAGCTGAGCTaGAAGGAATTTGCTGTCTGTGCCAGAGGTCATAAA | + |
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Preference number: 6 (lower is better) Translates to: LRQYRAQLHELS*KEFAVCARGHK Trigger: TTTATGACCTCTGGCACAGACAGCAAATTCCTTCCAGCTCAGCTCGTGGAGCTGGGCTCTGTACTGCCTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS TCA 72 bp | CCCTACTTTCTGTGGCCATGCCTTCGGCTCTCTCTGTaGCAATCCATTGAACAAGGTTCTTCTAGGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PYFLWPCLRLSL*QSIEQGSSRLL Trigger: CAGAAGCCTAGAAGAACCTTGTTCAATGGATTGTCACAGAGAGAGCCGAAGGCATGGCCACAGAAAGTAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655696.1 |
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| CDS GCA 72 bp | ACCCCTCCTACAGATGTGCCTTTCACTCTCATTTCCTaGTCCAGACCAACCCTTCGGAGATTATTTTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: TPPTDVPFTLIS*SRPTLRRLFSG Trigger: CCCTGAAAATAATCTCCGAAGGGTTGGTCTGGAGCAGGAAATGAGAGTGAAAGGCACATCTGTAGGAGGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS GCA 72 bp | GCAAGGAAACAACGGCCTCAGTCATTTGAGGATGAGTaGATTTTCCCAGTGGGTGCATTGAGAACCATCTTC | + |
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Preference number: 6 (lower is better) Translates to: ARKQRPQSFEDE*IFPVGALRTIF Trigger: GAAGATGGTTCTCAATGCACCCACTGGGAAAATGCACTCATCCTCAAATGACTGAGGCCGTTGTTTCCTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS CCA 72 bp | GTCCTCTCAAGCGATTCTCAGCCTTGGCATATGCAGTaGCTTCATTCAGATTCCAGCAAAAAGGAATTGGCA | + |
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Preference number: 6 (lower is better) Translates to: VLSSDSQPWHMQ*LHSDSSKKELA Trigger: TGCCAATTCCTTTTTGCTGGAATCTGAATGAAGCCACTGCATATGCCAAGGCTGAGAATCGCTTGAGAGGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS CCA 72 bp | TCTCCGGGGATAATTTCACCTGGGACATTGAGGAAATaGAGCTTGGAGTATGTGCACTTCCTGTCATCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SPGIISPGTLRK*SLEYVHFLSSK Trigger: CTTTGATGACAGGAAGTGCACATACTCCAAGCTCCATTTCCTCAATGTCCCAGGTGAAATTATCCCCGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS CAA 90 bp | CCTTCAAGGAAAAGGCCCATAAGTCCTCTCAAGCGATTCTCAGCCTaGGCATATGCAGTGGCTTCATTCAGATTCCAGCAAAAAGGAATT | + |
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Preference number: 6 (lower is better) Translates to: PSRKRPISPLKRFSA*AYAVASFRFQQKGI Trigger: AATTCCTTTTTGCTGGAATCTGAATGAAGCCACTGCATATGCCAAGGCTGAGAATCGCTTGAGAGGACTTATGGGCCTTTTCCTTGAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS CAA 90 bp | CGAGAGGTGTCTGAGTCTGCAGAATTTGTGATGATAGCCGGTTCCTaGGATAGTACTCTTCCTCATCCTCTTCCAAATCTCATGGTCTAT | + |
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Preference number: 6 (lower is better) Translates to: REVSESAEFVMIAGS*DSTLPHPLPNLMVY Trigger: ATAGACCATGAGATTTGGAAGAGGATGAGGAAGAGTACTATCCAAGGAACCGGCTATCATCACAAATTCTGCAGACTCAGACACCTCTCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS TCA 72 bp | CATTTTCAGATGGTAACTGGTAGGAGCCTTAGGTCATaGAGCTCTATGGTTCCCAATTGGAGATCGGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: HFQMVTGRSLRS*SSMVPNWRSAE Trigger: TTCTGCCGATCTCCAATTGGGAACCATAGAGCTTCATGACCTAAGGCTCCTACCAGTTACCATCTGAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS TCA 72 bp | TCTCCATTATGCATGAGCTGCTTCTTTGGTTTCGAATaGTCAGTGTCTCCGCTGTTCTTTCTTCTCCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SPLCMSCFFGFE*SVSPLFFLLPS Trigger: AGAAGGGAGAAGAAAGAACAGCGGAGACACTGATCATTCGAAACCAAAGAAGCAGCTCATGCATAATGGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000563553.1 ENST00000654280.1 ENST00000655696.1 |
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| CDS GCA 72 bp | CATAAGTCCTCTCAAGCGATTCTCAGCCTTGGCATATaGAGTGGCTTCATTCAGATTCCAGCAAAAAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: HKSSQAILSLGI*SGFIQIPAKRN Trigger: ATTCCTTTTTGCTGGAATCTGAATGAAGCCACTGCATATGCCAAGGCTGAGAATCGCTTGAGAGGACTTATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS CAA 72 bp | TCTGAGTCTGCAGAATTTGTGATGATAGCCGGTTCCTaGGATAGTACTCTTCCTCATCCTCTTCCAAATCTC | + |
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Preference number: 6 (lower is better) Translates to: SESAEFVMIAGS*DSTLPHPLPNL Trigger: GAGATTTGGAAGAGGATGAGGAAGAGTACTATCCAAGGAACCGGCTATCATCACAAATTCTGCAGACTCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654280.1 ENST00000655696.1 |
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| CDS TCA 72 bp | CTAGCAATTTGCATGCAGATAGCTCTCCATTATGCATaGGCTGCTTCTTTGGTTTCGAATGATCAGTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: LAICMQIALHYA*AASLVSNDQCL Trigger: GAGACACTGATCATTCGAAACCAAAGAAGCAGCTCATGCATAATGGAGAGCTATCTGCATGCAAATTGCTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000563553.1 ENST00000654280.1 ENST00000655696.1 |
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| CDS CAA 72 bp | CAATATCCCAGAAAAGTAGGAAGTACTCCTAGCAATTaGCATGCAGATAGCTCTCCATTATGCATGAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: QYPRKVGSTPSN*HADSSPLCMSC Trigger: GCAGCTCATGCATAATGGAGAGCTATCTGCATGCAAATTGCTAGGAGTACTTCCTACTTTTCTGGGATATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000563553.1 ENST00000654280.1 ENST00000655696.1 |
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| CDS CAA 72 bp | AGCAAGAGCACTGCATTTAATGTCATGTGTCTGTTTTaGAGTCCTGGAGATTCTACTTACTGGCATGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: SKSTAFNVMCLF*SPGDSTYWHVA Trigger: TGCTACATGCCAGTAAGTAGAATCTCCAGGACTCAAAAACAGACACATGACATTAAATGCAGTGCTCTTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS CAA 72 bp | GAAATTAAGCAGCTTTCTCCTATAACATCTGAAAGTTaGAGAGACATAATCTGGCAAAAGTGGCAGCGGCAC | + |
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Preference number: 6 (lower is better) Translates to: EIKQLSPITSES*RDIIWQKWQRH Trigger: GTGCCGCTGCCACTTTTGCCAGATTATGTCTCTCAAACTTTCAGATGTTATAGGAGAAAGCTGCTTAATTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS CAA 90 bp | TGTTGTAGTAGCAAGAGCACTGCATTTAATGTCATGTGTCTGTTTTaGAGTCCTGGAGATTCTACTTACTGGCATGTAGCATTCAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: CCSSKSTAFNVMCLF*SPGDSTYWHVAFSL Trigger: CAGACTGAATGCTACATGCCAGTAAGTAGAATCTCCAGGACTCAAAAACAGACACATGACATTAAATGCAGTGCTCTTGCTACTACAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS TCA 72 bp | CATTCAGTCTGCCTTTTCTTTAGAATAGAATTGCACTaGAAAGCATCTGCCCAGGCTGCAATTATTTCTCAG | + |
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Preference number: 6 (lower is better) Translates to: HSVCLFFRIELH*KASAQAAIISQ Trigger: CTGAGAAATAATTGCAGCCTGGGCAGATGCTTTTCAGTGCAATTCTATTCTAAAGAAAAGGCAGACTGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS GCA 72 bp | GGGATTGCTGTAGGTCTCCAAAGGGATGTAACAAGGTaGTTTATAAACTGTAAGGTGACGTTATTATCTTTG | + |
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Preference number: 6 (lower is better) Translates to: GIAVGLQRDVTR*FINCKVTLLSL Trigger: CAAAGATAATAACGTCACCTTACAGTTTATAAAGCACCTTGTTACATCCCTTTGGAGACCTACAGCAATCCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS CCA 72 bp | AGCTGTAGGATACTAATACAGGTTCTGGCACCTACTTaGAAGTTGAGGAGTTTTTCTTGTATTCACACAGTA | + |
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Preference number: 6 (lower is better) Translates to: SCRILIQVLAPT*KLRSFSCIHTV Trigger: TACTGTGTGAATACAAGAAAAACTCCTCAACTTCCAAGTAGGTGCCAGAACCTGTATTAGTATCCTACAGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS TCA 72 bp | TGTATTGATATGGTTTCATCAGCTACCGCTTATTGTTaGGGGGCTCTTATAACACGGACTCGTATAACATTA | + |
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Preference number: 6 (lower is better) Translates to: CIDMVSSATAYC*GALITRTRITL Trigger: TAATGTTATACGAGTCCGTGTTATAAGAGCCCCTCAACAATAAGCGGTAGCTGATGAAACCATATCAATACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS CAA 72 bp | GGTTCTGGCACCTACTTGGAAGTTGAGGAGTTTTTCTaGTATTCACACAGTAGATTAACACTCAGCAATAAA | + |
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Preference number: 6 (lower is better) Translates to: GSGTYLEVEEFF*YSHSRLTLSNK Trigger: TTTATTGCTGAGTGTTAATCTACTGTGTGAATACAAGAAAAACTCCTCAACTTCCAAGTAGGTGCCAGAACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS CAA 90 bp | ACTAATACAGGTTCTGGCACCTACTTGGAAGTTGAGGAGTTTTTCTaGTATTCACACAGTAGATTAACACTCAGCAATAAAAGGGAATGT | + |
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Preference number: 6 (lower is better) Translates to: TNTGSGTYLEVEEFF*YSHSRLTLSNKREC Trigger: ACATTCCCTTTTATTGCTGAGTGTTAATCTACTGTGTGAATACAAGAAAAACTCCTCAACTTCCAAGTAGGTGCCAGAACCTGTATTAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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| CDS CAA 90 bp | GATGTAACAAGGTGCTTTATAAACTGTAAGGTGACGTTATTATCTTaGAAGCAAATTGAGGGCAGCCACTTAGAGCTCTACAATTTAAAT | + |
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Preference number: 6 (lower is better) Translates to: DVTRCFINCKVTLLS*KQIEGSHLELYNLN Trigger: ATTTAAATTGTAGAGCTCTAAGTGGCTGCCCTCAATTTGCTTCAAAGATAATAACGTCACCTTACAGTTTATAAAGCACCTTGTTACATC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS TCA 72 bp | TTCATAGAAATTGAGCAGTTATCCAAGCAAGGTCTATaGAGGCCAAATAATGTTTCCAGTTTCTTACCTTTG | + |
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Preference number: 6 (lower is better) Translates to: FIEIEQLSKQGL*RPNNVSSFLPL Trigger: CAAAGGTAAGAAACTGGAAACATTATTTGGCCTTCATAGACCTTGCTTGGATAACTGCTCAATTTCTATGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563553.1 |
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| CDS GCA 72 bp | GTGATATTTCTGCTTTTTGGCTATTATGAACACAGCTaGTTAGAACATTCTTATTCCCGCAGTCTTTTATTA | + |
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Preference number: 6 (lower is better) Translates to: VIFLLFGYYEHS*LEHSYSRSLLL Trigger: TAATAAAAGACTGCGGGAATAAGAATGTTCTAAGCAGCTGTGTTCATAATAGCCAAAAAGCAGAAATATCAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654280.1 |
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