RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01413 (Homo sapiens)

Ensembl gene IDs: ENSG00000260172

Ensembl transcript IDs: ENST00000564843.2, ENST00000662220.1

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GCCACGCCACCGTCAGCCGCTTCTCCCCACCTGTGCTCCGCGTGCTaGCCGCGTGTGCTTGGGCTGCAGTTTGCTCCTCGCGGCGTGCCC +
Preference number: 5 (lower is better)
Translates to: ATPPSAASPHLCSAC*PRVLGLQFAPRGVP
Trigger: GGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGGGAGAAGCGGCTGACGGTGGCGTGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS GCA 90 bp CGTCAGCCGCTTCTCCCCACCTGTGCTCCGCGTGCTGACCGCGTGTaGTTGGGCTGCAGTTTGCTCCTCGCGGCGTGCCCTGCTCACTGC +
Preference number: 5 (lower is better)
Translates to: RQPLLPTCAPRADRV*LGCSLLLAACPAHC
Trigger: GCAGTGAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGGGAGAAGCGGCTGACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS CCA 90 bp AGCCGCTTCTCCCCACCTGTGCTCCGCGTGCTGACCGCGTGTGCTTaGGCTGCAGTTTGCTCCTCGCGGCGTGCCCTGCTCACTGCTCAC +
Preference number: 5 (lower is better)
Translates to: SRFSPPVLRVLTACA*AAVCSSRRALLTAH
Trigger: GTGAGCAGTGAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGGGAGAAGCGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS GCA 90 bp CTTCTCCCCACCTGTGCTCCGCGTGCTGACCGCGTGTGCTTGGGCTaGAGTTTGCTCCTCGCGGCGTGCCCTGCTCACTGCTCACCATCC +
Preference number: 5 (lower is better)
Translates to: LLPTCAPRADRVCLG*SLLLAACPAHCSPS
Trigger: GGATGGTGAGCAGTGAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGGGAGAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS GCA 90 bp CCACCTGTGCTCCGCGTGCTGACCGCGTGTGCTTGGGCTGCAGTTTaGTCCTCGCGGCGTGCCCTGCTCACTGCTCACCATCCCAAAGAA +
Preference number: 5 (lower is better)
Translates to: PPVLRVLTACAWAAV*SSRRALLTAHHPKE
Trigger: TTCTTTGGGATGGTGAGCAGTGAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS GCA 90 bp CTCCTTCAACACAGTTTCTCCCAGGCAGCTGGGGCGGAGACCCAGTaGTCCAGGCCATTCTTCACTAACAGCCAGCATGATTGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: LLQHSFSQAAGAETQ*SRPFFTNSQHDCPG
Trigger: TCCAGGACAATCATGCTGGCTGTTAGTGAAGAATGGCCTGGAGCACTGGGTCTCCGCCCCAGCTGCCTGGGAGAAACTGTGTTGAAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662220.1
CDS TCA 90 bp CTTGGAGCCAAGAGAAGGAAGTACAGTGAGAGACTCTCGGTCTCCTaGGGAGCCAAGGCCTCTTGTTTACCGACGTCTGAGAGACCACGA +
Preference number: 5 (lower is better)
Translates to: LGAKRRKYSERLSVS*GAKASCLPTSERPR
Trigger: TCGTGGTCTCTCAGACGTCGGTAAACAAGAGGCCTTGGCTCCTCAGGAGACCGAGAGTCTCTCACTGTACTTCCTTCTCTTGGCTCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS GCA 90 bp CTCCTTCAACACAGTTTCTCCCAGGCAGCTGGGGCGGAGACCCAGTaGTCCAGGCCATTCTTCACTAACAGCCAGCATGATTGTCTTTAC +
Preference number: 5 (lower is better)
Translates to: LLQHSFSQAAGAETQ*SRPFFTNSQHDCLY
Trigger: GTAAAGACAATCATGCTGGCTGTTAGTGAAGAATGGCCTGGAGCACTGGGTCTCCGCCCCAGCTGCCTGGGAGAAACTGTGTTGAAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS CCA 90 bp GGAGCCAAGGCCTCTTGTTTACCGACGTCTGAGAGACCACGAAATTaGCCTGATCTTCAGATTTCAGTTGAGGCAGAGGCTGGACACCCA +
Preference number: 5 (lower is better)
Translates to: GAKASCLPTSERPRN*PDLQISVEAEAGHP
Trigger: TGGGTGTCCAGCCTCTGCCTCAACTGAAATCTGAAGATCAGGCCAATTTCGTGGTCTCTCAGACGTCGGTAAACAAGAGGCCTTGGCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS TCA 90 bp TCCAGGCCATTCTTCACTAACAGCCAGCATGATTGTCTTTACAAATaGAGGAATCCCCATAGCAACCGTTCTATGTCCTTGGAGCCAAGA +
Preference number: 5 (lower is better)
Translates to: SRPFFTNSQHDCLYK*RNPHSNRSMSLEPR
Trigger: TCTTGGCTCCAAGGACATAGAACGGTTGCTATGGGGATTCCTTCATTTGTAAAGACAATCATGCTGGCTGTTAGTGAAGAATGGCCTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS CCA 72 bp TCCCCACCTGTGCTCCGCGTGCTGACCGCGTGTGCTTaGGCTGCAGTTTGCTCCTCGCGGCGTGCCCTGCTC +
Preference number: 6 (lower is better)
Translates to: SPPVLRVLTACA*AAVCSSRRALL
Trigger: GAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS CAA 72 bp CTCCCCACCTGTGCTCCGCGTGCTGACCGCGTGTGCTaGGGCTGCAGTTTGCTCCTCGCGGCGTGCCCTGCT +
Preference number: 6 (lower is better)
Translates to: LPTCAPRADRVC*GCSLLLAACPA
Trigger: AGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGGGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS CAA 90 bp CAGCCGCTTCTCCCCACCTGTGCTCCGCGTGCTGACCGCGTGTGCTaGGGCTGCAGTTTGCTCCTCGCGGCGTGCCCTGCTCACTGCTCA +
Preference number: 6 (lower is better)
Translates to: QPLLPTCAPRADRVC*GCSLLLAACPAHCS
Trigger: TGAGCAGTGAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGGGAGAAGCGGCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS TCA 72 bp CCGTCAGCCGCTTCTCCCCACCTGTGCTCCGCGTGCTaGCCGCGTGTGCTTGGGCTGCAGTTTGCTCCTCGC +
Preference number: 6 (lower is better)
Translates to: PSAASPHLCSAC*PRVLGLQFAPR
Trigger: GCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGGGAGAAGCGGCTGACGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS GCA 72 bp ACCTGTGCTCCGCGTGCTGACCGCGTGTGCTTGGGCTaGAGTTTGCTCCTCGCGGCGTGCCCTGCTCACTGC +
Preference number: 6 (lower is better)
Translates to: TCAPRADRVCLG*SLLLAACPAHC
Trigger: GCAGTGAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS GCA 72 bp CTTCTCCCCACCTGTGCTCCGCGTGCTGACCGCGTGTaGTTGGGCTGCAGTTTGCTCCTCGCGGCGTGCCCT +
Preference number: 6 (lower is better)
Translates to: LLPTCAPRADRV*LGCSLLLAACP
Trigger: AGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGGGAGAAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS CAA 72 bp GCTCCGCGTGCTGACCGCGTGTGCTTGGGCTGCAGTTaGCTCCTCGCGGCGTGCCCTGCTCACTGCTCACCA +
Preference number: 6 (lower is better)
Translates to: APRADRVCLGCS*LLAACPAHCSP
Trigger: TGGTGAGCAGTGAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS GCA 72 bp CTCCGCGTGCTGACCGCGTGTGCTTGGGCTGCAGTTTaGTCCTCGCGGCGTGCCCTGCTCACTGCTCACCAT +
Preference number: 6 (lower is better)
Translates to: LRVLTACAWAAV*SSRRALLTAHH
Trigger: ATGGTGAGCAGTGAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS CAA 72 bp CTCCTCCTGCCCTTCCCAGGATCGTCCCTGTCCAAGTaGCCCCCATCTCCTGGCTGGACCCCTGCAGGAGCC +
Preference number: 6 (lower is better)
Translates to: LLLPFPGSSLSK*PPSPGWTPAGA
Trigger: GGCTCCTGCAGGGGTCCAGCCAGGAGATGGGGGCAACTTGGACAGGGACGATCCTGGGAAGGGCAGGAGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000564843.2
ENST00000662220.1
CDS CAA 90 bp CCCACCTGTGCTCCGCGTGCTGACCGCGTGTGCTTGGGCTGCAGTTaGCTCCTCGCGGCGTGCCCTGCTCACTGCTCACCATCCCAAAGA +
Preference number: 6 (lower is better)
Translates to: PTCAPRADRVCLGCS*LLAACPAHCSPSQR
Trigger: TCTTTGGGATGGTGAGCAGTGAGCAGGGCACGCCGCGAGGAGCAAACTGCAGCCCAAGCACACGCGGTCAGCACGCGGAGCACAGGTGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS CCA 72 bp GGGTTGTCTGGAGTCTGGAGGGGAGGCCAGGGGGTATaGCTCCTTCAACACAGTTTCTCCCAGGCAGCTGGG +
Preference number: 6 (lower is better)
Translates to: GLSGVWRGGQGV*LLQHSFSQAAG
Trigger: CCCAGCTGCCTGGGAGAAACTGTGTTGAAGGAGCCATACCCCCTGGCCTCCCCTCCAGACTCCAGACAACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000564843.2
ENST00000662220.1
CDS CCA 72 bp GGTATGGCTCCTTCAACACAGTTTCTCCCAGGCAGCTaGGGCGGAGACCCAGTGCTCCAGGCCATTCTTCAC +
Preference number: 6 (lower is better)
Translates to: GMAPSTQFLPGS*GGDPVLQAILH
Trigger: GTGAAGAATGGCCTGGAGCACTGGGTCTCCGCCCCAGCTGCCTGGGAGAAACTGTGTTGAAGGAGCCATACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000564843.2
ENST00000662220.1
CDS CAA 72 bp AGAGACCACGAAATTGGCCTGATCTTCAGATTTCAGTaGAGGCAGAGGCTGGACACCCAGAGCTCGGGGCAG +
Preference number: 6 (lower is better)
Translates to: RDHEIGLIFRFQ*RQRLDTQSSGQ
Trigger: CTGCCCCGAGCTCTGGGTGTCCAGCCTCTGCCTCAACTGAAATCTGAAGATCAGGCCAATTTCGTGGTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS TCA 72 bp AAGAGAAGGAAGTACAGTGAGAGACTCTCGGTCTCCTaGGGAGCCAAGGCCTCTTGTTTACCGACGTCTGAG +
Preference number: 6 (lower is better)
Translates to: KRRKYSERLSVS*GAKASCLPTSE
Trigger: CTCAGACGTCGGTAAACAAGAGGCCTTGGCTCCTCAGGAGACCGAGAGTCTCTCACTGTACTTCCTTCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS CCA 72 bp GCCTCTTGTTTACCGACGTCTGAGAGACCACGAAATTaGCCTGATCTTCAGATTTCAGTTGAGGCAGAGGCT +
Preference number: 6 (lower is better)
Translates to: ASCLPTSERPRN*PDLQISVEAEA
Trigger: AGCCTCTGCCTCAACTGAAATCTGAAGATCAGGCCAATTTCGTGGTCTCTCAGACGTCGGTAAACAAGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564843.2
CDS GCA 72 bp ATTTTAAGGGAAAAATACTGTGCAAACGGCTTCACATaGGTCTCCGTTTCCAAGCTCCAAGATGGCTGCTCT +
Preference number: 6 (lower is better)
Translates to: ILREKYCANGFT*VSVSKLQDGCS
Trigger: AGAGCAGCCATCTTGGAGCTTGGAAACGGAGACGCATGTGAAGCCGTTTGCACAGTATTTTTCCCTTAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000564843.2