Pregenerated sensors for LINC01410 (Homo sapiens)
Ensembl gene IDs: ENSG00000238113Ensembl transcript IDs: ENST00000424345.5, ENST00000427509.5, ENST00000452184.2, ENST00000659835.1, ENST00000660304.1, ENST00000663670.1, ENST00000664868.1, ENST00000667536.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCCAGGAGCAGCTGGTGCAGCTTGCCTCAATATCTTATCACTAAGTaGATTCCTGGACCTGCTTTGAGTCAGTTTACACTAGTTATGCAA | + |
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Preference number: 5 (lower is better) Translates to: PRSSWCSLPQYLITK*IPGPALSQFTLVMQ Trigger: TTGCATAACTAGTGTAAACTGACTCAAAGCAGGTCCAGGAATGCACTTAGTGATAAGATATTGAGGCAAGCTGCACCAGCTGCTCCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424345.5 ENST00000663670.1 ENST00000667536.1 |
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| CDS TCA 90 bp | CTTCTCATATGGTGCTGCATGCCCAAGATTTTAATGTCCAGACACTaGAGAACATCTACTAGCATCAACACCATCCAGGAAAACATGACC | + |
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Preference number: 5 (lower is better) Translates to: LLIWCCMPKILMSRH*RTSTSINTIQENMT Trigger: GGTCATGTTTTCCTGGATGGTGTTGATGCTAGTAGATGTTCTTCAGTGTCTGGACATTAAAATCTTGGGCATGCAGCACCATATGAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENST00000424345.5 ENST00000427509.5 ENST00000452184.2 ENST00000659835.1 ENST00000660304.1 ENST00000663670.1 ENST00000664868.1 ENST00000667536.1 |
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| CDS GCA 72 bp | TCACCGAGTGCGTACCCAGGAGCAGCTGGTGCAGCTTaGCTCAATATCTTATCACTAAGTGCATTCCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: SPSAYPGAAGAA*LNILSLSAFLD Trigger: GTCCAGGAATGCACTTAGTGATAAGATATTGAGGCAAGCTGCACCAGCTGCTCCTGGGTACGCACTCGGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424345.5 ENST00000663670.1 ENST00000667536.1 |
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| CDS CCA 72 bp | TGCGTGACATTCACCGAGTGCGTACCCAGGAGCAGCTaGTGCAGCTTGCCTCAATATCTTATCACTAAGTGC | + |
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Preference number: 6 (lower is better) Translates to: CVTFTECVPRSS*CSLPQYLITKC Trigger: GCACTTAGTGATAAGATATTGAGGCAAGCTGCACCAGCTGCTCCTGGGTACGCACTCGGTGAATGTCACGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424345.5 ENST00000663670.1 ENST00000667536.1 |
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| CDS GCA 72 bp | GAGAGGTCAGATAGGCATCACACTCAGCAGCCAATATaGACTGCCAGCCATGTAAGTGACCCGTTTAGACTC | + |
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Preference number: 6 (lower is better) Translates to: ERSDRHHTQQPI*TASHVSDPFRL Trigger: GAGTCTAAACGGGTCACTTACATGGCTGGCAGTGCATATTGGCTGCTGAGTGTGATGCCTATCTGACCTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000424345.5 ENST00000659835.1 ENST00000660304.1 ENST00000664868.1 |
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| CDS CAA 72 bp | TTCACCGAGTGCGTACCCAGGAGCAGCTGGTGCAGCTaGCCTCAATATCTTATCACTAAGTGCATTCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: FTECVPRSSWCS*PQYLITKCIPG Trigger: TCCAGGAATGCACTTAGTGATAAGATATTGAGGCAAGCTGCACCAGCTGCTCCTGGGTACGCACTCGGTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424345.5 ENST00000663670.1 ENST00000667536.1 |
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| CDS TCA 72 bp | AAACTATCACAAAGAGAGAAATGCAGGGGTTTTGCGTaGCATTCACCGAGTGCGTACCCAGGAGCAGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: KLSQREKCRGFA*HSPSAYPGAAG Trigger: ACCAGCTGCTCCTGGGTACGCACTCGGTGAATGTCACGCAAAACCCCTGCATTTCTCTCTTTGTGATAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000424345.5 ENST00000663670.1 ENST00000667536.1 |
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| CDS TCA 72 bp | ATTTGCCTGTGTGTCTTGGGACAAACTACCACGTTGTaGGCACTCCAGGTAACATGGAGAGGTCAGATAGGC | + |
|
Preference number: 6 (lower is better) Translates to: ICLCVLGQTTTL*ALQVTWRGQIG Trigger: GCCTATCTGACCTCTCCATGTTACCTGGAGTGCTCACAACGTGGTAGTTTGTCCCAAGACACACAGGCAAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000424345.5 ENST00000659835.1 ENST00000660304.1 ENST00000664868.1 |
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| CDS GCA 72 bp | GTGACATTCACCGAGTGCGTACCCAGGAGCAGCTGGTaGAGCTTGCCTCAATATCTTATCACTAAGTGCATT | + |
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Preference number: 6 (lower is better) Translates to: VTFTECVPRSSW*SLPQYLITKCI Trigger: AATGCACTTAGTGATAAGATATTGAGGCAAGCTGCACCAGCTGCTCCTGGGTACGCACTCGGTGAATGTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424345.5 ENST00000663670.1 ENST00000667536.1 |
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| CDS TCA 72 bp | TGGTGCTGCATGCCCAAGATTTTAATGTCCAGACACTaGAGAACATCTACTAGCATCAACACCATCCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: WCCMPKILMSRH*RTSTSINTIQE Trigger: TTCCTGGATGGTGTTGATGCTAGTAGATGTTCTTCAGTGTCTGGACATTAAAATCTTGGGCATGCAGCACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000424345.5 ENST00000427509.5 ENST00000452184.2 ENST00000659835.1 ENST00000660304.1 ENST00000663670.1 ENST00000664868.1 ENST00000667536.1 |
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| CDS TCA 72 bp | CGAATCTCCCATTTCTTGAATCTGTGCTGGTCACAATaGCTTGCTTTTCCAATAGGATGCAGCAGAAGTCGT | + |
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Preference number: 6 (lower is better) Translates to: RISHFLNLCWSQ*LAFPIGCSRSR Trigger: ACGACTTCTGCTGCATCCTATTGGAAAAGCAAGTCATTGTGACCAGCACAGATTCAAGAAATGGGAGATTCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000424345.5 ENST00000659835.1 ENST00000660304.1 ENST00000664868.1 |
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| CDS CAA 90 bp | AGCTTGCCTCAATATCTTATCACTAAGTGCATTCCTGGACCTGCTTaGAGTCAGTTTACACTAGTTATGCAATTAAGGGTGGAAGGTAAA | + |
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Preference number: 6 (lower is better) Translates to: SLPQYLITKCIPGPA*SQFTLVMQLRVEGK Trigger: TTTACCTTCCACCCTTAATTGCATAACTAGTGTAAACTGACTCAAAGCAGGTCCAGGAATGCACTTAGTGATAAGATATTGAGGCAAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424345.5 ENST00000663670.1 ENST00000667536.1 |
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| CDS TCA 72 bp | TTTACATTGACAGGTAGAGTCGAATCTCCCATTTCTTaGATCTGTGCTGGTCACAATGACTTGCTTTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: FTLTGRVESPIS*ICAGHNDLLFQ Trigger: TTGGAAAAGCAAGTCATTGTGACCAGCACAGATTCAAGAAATGGGAGATTCGACTCTACCTGTCAATGTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000424345.5 ENST00000659835.1 ENST00000660304.1 ENST00000664868.1 |
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| CDS CAA 72 bp | CAATATCTTATCACTAAGTGCATTCCTGGACCTGCTTaGAGTCAGTTTACACTAGTTATGCAATTAAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: QYLITKCIPGPA*SQFTLVMQLRV Trigger: CACCCTTAATTGCATAACTAGTGTAAACTGACTCAAAGCAGGTCCAGGAATGCACTTAGTGATAAGATATTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424345.5 ENST00000663670.1 ENST00000667536.1 |
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