Pregenerated sensors for LINC01402 (Homo sapiens)
Ensembl gene IDs: ENSG00000228139Ensembl transcript IDs: ENST00000422226.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAAATCAAGCTGTCACAGACGTCCCAGCTAGTCTACTGCACTCCATaGTTAAAACTCTTACATGTCTCTCATGCAGCATTTGATCCAAGG | + |
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Preference number: 5 (lower is better) Translates to: EIKLSQTSQLVYCTP*LKLLHVSHAAFDPR Trigger: CCTTGGATCAAATGCTGCATGAGAGACATGTAAGAGTTTTAATCATGGAGTGCAGTAGACTAGCTGGGACGTCTGTGACAGCTTGATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422226.1 |
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| CDS TCA 72 bp | GAAGGTGAGAAAACACCGGGGTACACTGTGGAAATCTaGGATGTGGAAGAAATCAAGCTGTCACAGACGTCC | + |
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Preference number: 6 (lower is better) Translates to: EGEKTPGYTVEI*DVEEIKLSQTS Trigger: GGACGTCTGTGACAGCTTGATTTCTTCCACATCTCAGATTTCCACAGTGTACCCCGGTGTTTTCTCACCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422226.1 |
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| CDS TCA 72 bp | CTATCTGGTTCTCAGCTTCCTCACCTAAGATGCCTATaGGTGACTGAAGGTGAGAAAACACCGGGGTACACT | + |
|
Preference number: 6 (lower is better) Translates to: LSGSQLPHLRCL*VTEGEKTPGYT Trigger: AGTGTACCCCGGTGTTTTCTCACCTTCAGTCACTCATAGGCATCTTAGGTGAGGAAGCTGAGAACCAGATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422226.1 |
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| CDS CCA 72 bp | AGATCCTTGCGTTCTATCCTGTGTGTCCTAGGACACTaGATGAATCTATCTGGTTCTCAGCTTCCTCACCTA | + |
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Preference number: 6 (lower is better) Translates to: RSLRSILCVLGH*MNLSGSQLPHL Trigger: TAGGTGAGGAAGCTGAGAACCAGATAGATTCATCCAGTGTCCTAGGACACACAGGATAGAACGCAAGGATCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422226.1 |
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| CDS CCA 72 bp | TATCCTGTGTGTCCTAGGACACTGGATGAATCTATCTaGTTCTCAGCTTCCTCACCTAAGATGCCTATGAGT | + |
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Preference number: 6 (lower is better) Translates to: YPVCPRTLDESI*FSASSPKMPMS Trigger: ACTCATAGGCATCTTAGGTGAGGAAGCTGAGAACCAGATAGATTCATCCAGTGTCCTAGGACACACAGGATA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422226.1 |
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