Pregenerated sensors for LINC01400 (Homo sapiens)
Ensembl gene IDs: ENSG00000232920Ensembl transcript IDs: ENST00000426358.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AATCTACTCATTCCAAAAGTGTCCACTGTGAGCCTTCTCTGTGCTTaGCCTTGGGCTAGGTGCTGGGTGGAGAGACATGAGCCAGTCATC | + |
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Preference number: 5 (lower is better) Translates to: NLLIPKVSTVSLLCA*PWARCWVERHEPVI Trigger: GATGACTGGCTCATGTCTCTCCACCCAGCACCTAGCCCAAGGCCAAGCACAGAGAAGGCTCACAGTGGACACTTTTGGAATGAGTAGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000426358.1 |
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| CDS CAA 90 bp | ACAGAAGACTCGCACACTTGTGATGCTTTTGCTTATCCTGTTCCTTaGCCAGAAGATCCCCCTGCTTCTCTACCTAGCAAACTCTCATTC | + |
|
Preference number: 6 (lower is better) Translates to: TEDSHTCDAFAYPVP*PEDPPASLPSKLSF Trigger: GAATGAGAGTTTGCTAGGTAGAGAAGCAGGGGGATCTTCTGGCAAAGGAACAGGATAAGCAAAAGCATCACAAGTGTGCGAGTCTTCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000426358.1 |
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| CDS CAA 72 bp | TCGCACACTTGTGATGCTTTTGCTTATCCTGTTCCTTaGCCAGAAGATCCCCCTGCTTCTCTACCTAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: SHTCDAFAYPVP*PEDPPASLPSK Trigger: TTTGCTAGGTAGAGAAGCAGGGGGATCTTCTGGCAAAGGAACAGGATAAGCAAAAGCATCACAAGTGTGCGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000426358.1 |
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| CDS CAA 72 bp | TTGTCAACACAGAAGACTCGCACACTTGTGATGCTTTaGCTTATCCTGTTCCTTTGCCAGAAGATCCCCCTG | + |
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Preference number: 6 (lower is better) Translates to: LSTQKTRTLVML*LILFLCQKIPL Trigger: CAGGGGGATCTTCTGGCAAAGGAACAGGATAAGCAAAAGCATCACAAGTGTGCGAGTCTTCTGTGTTGACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000426358.1 |
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| CDS TCA 72 bp | ACCACTTCCCAGCTGTGTAATTCAGAGCAAGTCACTTaGTTACTCCAAGTCTCCATTTCCATACTAGTGAGG | + |
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Preference number: 6 (lower is better) Translates to: TTSQLCNSEQVT*LLQVSISILVR Trigger: CCTCACTAGTATGGAAATGGAGACTTGGAGTAATCAAGTGACTTGCTCTGAATTACACAGCTGGGAAGTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000426358.1 |
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