Pregenerated sensors for LINC01399 (Homo sapiens)

Ensembl gene IDs: ENSG00000233080

Ensembl transcript IDs: ENST00000423311.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGGTGTCTCGGTGGGTCCCTGTGCCTCGTTCTCACTGATGGAATCTaGGCAGAAGTGAGGGGTCACTTCCAGGACAGGGCAGTCAAGGGC	+
Preference number: 5 (lower is better) Translates to: WCLGGSLCLVLTDGI*AEVRGHFQDRAVKG Trigger: GCCCTTGACTGCCCTGTCCTGGAAGTGACCCCTCACTTCTGCTCAGATTCCATCAGTGAGAACGAGGCACAGGGACCCACCGAGACACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000423311.1
CDS TCA 90 bp	CACAGCCCATTGGTGTCTCGGTGGGTCCCTGTGCCTCGTTCTCACTaGTGGAATCTGAGCAGAAGTGAGGGGTCACTTCCAGGACAGGGC	+
Preference number: 5 (lower is better) Translates to: HSPLVSRWVPVPRSH*WNLSRSEGSLPGQG Trigger: GCCCTGTCCTGGAAGTGACCCCTCACTTCTGCTCAGATTCCATCAGTGAGAACGAGGCACAGGGACCCACCGAGACACCAATGGGCTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000423311.1
CDS CCA 90 bp	CCCACGACCTCAGTTTCTCAATCTCTTCCTCAGCCCACAGCCCATTaGTGTCTCGGTGGGTCCCTGTGCCTCGTTCTCACTGATGGAATC	+
Preference number: 5 (lower is better) Translates to: PTTSVSQSLPQPTAH*CLGGSLCLVLTDGI Trigger: GATTCCATCAGTGAGAACGAGGCACAGGGACCCACCGAGACACCAATGGGCTGTGGGCTGAGGAAGAGATTGAGAAACTGAGGTCGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000423311.1
CDS TCA 72 bp	GGTGGGTCCCTGTGCCTCGTTCTCACTGATGGAATCTaGGCAGAAGTGAGGGGTCACTTCCAGGACAGGGCA	+
Preference number: 6 (lower is better) Translates to: GGSLCLVLTDGI*AEVRGHFQDRA Trigger: TGCCCTGTCCTGGAAGTGACCCCTCACTTCTGCTCAGATTCCATCAGTGAGAACGAGGCACAGGGACCCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000423311.1
CDS CAA 72 bp	CTCAGTTTCTCAATCTCTTCCTCAGCCCACAGCCCATaGGTGTCTCGGTGGGTCCCTGTGCCTCGTTCTCAC	+
Preference number: 6 (lower is better) Translates to: LSFSISSSAHSP*VSRWVPVPRSH Trigger: GTGAGAACGAGGCACAGGGACCCACCGAGACACCAATGGGCTGTGGGCTGAGGAAGAGATTGAGAAACTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000423311.1
CDS TCA 72 bp	TGTGCCTCGTTCTCACTGATGGAATCTGAGCAGAAGTaGGGGGTCACTTCCAGGACAGGGCAGTCAAGGGCA	+
Preference number: 6 (lower is better) Translates to: CASFSLMESEQK*GVTSRTGQSRA Trigger: TGCCCTTGACTGCCCTGTCCTGGAAGTGACCCCTCACTTCTGCTCAGATTCCATCAGTGAGAACGAGGCACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000423311.1
CDS TCA 72 bp	TTGGTGTCTCGGTGGGTCCCTGTGCCTCGTTCTCACTaGTGGAATCTGAGCAGAAGTGAGGGGTCACTTCCA	+
Preference number: 6 (lower is better) Translates to: LVSRWVPVPRSH*WNLSRSEGSLP Trigger: TGGAAGTGACCCCTCACTTCTGCTCAGATTCCATCAGTGAGAACGAGGCACAGGGACCCACCGAGACACCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000423311.1
CDS CCA 72 bp	TCAGTTTCTCAATCTCTTCCTCAGCCCACAGCCCATTaGTGTCTCGGTGGGTCCCTGTGCCTCGTTCTCACT	+
Preference number: 6 (lower is better) Translates to: SVSQSLPQPTAH*CLGGSLCLVLT Trigger: AGTGAGAACGAGGCACAGGGACCCACCGAGACACCAATGGGCTGTGGGCTGAGGAAGAGATTGAGAAACTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000423311.1

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