Pregenerated sensors for LINC01398 (Homo sapiens)
Ensembl gene IDs: ENSG00000224863Ensembl transcript IDs: ENST00000416581.1, ENST00000634819.2, ENST00000656737.1, ENST00000663451.1
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGGGAGCAGGTGGGAGGGACTCGGGCTCCGGCTCCCCAGTCGCTGTaGGGTGAGGGGCCTGCTCAGGTCTGGGTGTCTGTGCCCAGAATT | + |
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Preference number: 5 (lower is better) Translates to: REQVGGTRAPAPQSL*GEGPAQVWVSVPRI Trigger: AATTCTGGGCACAGACACCCAGACCTGAGCAGGCCCCTCACCCCACAGCGACTGGGGAGCCGGAGCCCGAGTCCCTCCCACCTGCTCCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS CCA 90 bp | TCCAGCTGCAGGATGAGACAGACCCTCAGAAACCGAGGGAGCAGGTaGGAGGGACTCGGGCTCCGGCTCCCCAGTCGCTGTGGGGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: SSCRMRQTLRNRGSR*EGLGLRLPSRCGVR Trigger: CCTCACCCCACAGCGACTGGGGAGCCGGAGCCCGAGTCCCTCCCACCTGCTCCCTCGGTTTCTGAGGGTCTGTCTCATCCTGCAGCTGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS GCA 90 bp | CTTGGAAAAGGTAAGAGACCTCAGGTGTCTCCTGCCTCTTCTTCCTaGATCCCATTGCTGGCGCGGCATTCTGGGCACCAGGGGGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: LGKGKRPQVSPASSS*IPLLARHSGHQGAE Trigger: TTCTGCCCCCTGGTGCCCAGAATGCCGCGCCAGCAATGGGATGCAGGAAGAAGAGGCAGGAGACACCTGAGGTCTCTTACCTTTTCCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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| CDS CCA 90 bp | CTGAGATCTCTGCAGGAGAGGGAGCCTCAGAGTTTCCCCTCAGATTaGGTTAGTAGGGCTGGTGCCCTGTGTTCCCTGCCCTGTAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: LRSLQEREPQSFPSD*VSRAGALCSLPCKR Trigger: CCTCTTACAGGGCAGGGAACACAGGGCACCAGCCCTACTAACCCAATCTGAGGGGAAACTCTGAGGCTCCCTCTCCTGCAGAGATCTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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| CDS TCA 90 bp | CAGCCCCTCATGCGGGTGCCTGGCAACACACCCCATTCAATTCCATaGTCCAGACCTGACTTTACCATAGGGCCAGACCTTGTCCATGTT | + |
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Preference number: 5 (lower is better) Translates to: QPLMRVPGNTPHSIP*SRPDFTIGPDLVHV Trigger: AACATGGACAAGGTCTGGCCCTATGGTAAAGTCAGGTCTGGATCATGGAATTGAATGGGGTGTGTTGCCAGGCACCCGCATGAGGGGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000663451.1 |
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| CDS CCA 90 bp | TGTCATTTGCTGTCTTGCTGTGGGGGCCTCTTTGAGGTCCATGTGTaGGTACATATGGAACCTCCTGGACCATATGTCTCCTCCTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: CHLLSCCGGLFEVHV*VHMEPPGPYVSSSP Trigger: AGGGGAGGAGGAGACATATGGTCCAGGAGGTTCCATATGTACCCACACATGGACCTCAAAGAGGCCCCCACAGCAAGACAGCAAATGACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS TCA 90 bp | CTGATGGGGAAACTGCCAGCACCATCTTCATCTGAAATCACTCCGTaGTCTGTGACTGTGGATGTCATTTGCTGTCTTGCTGTGGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: LMGKLPAPSSSEITP*SVTVDVICCLAVGA Trigger: GGCCCCCACAGCAAGACAGCAAATGACATCCACAGTCACAGATCACGGAGTGATTTCAGATGAAGATGGTGCTGGCAGTTTCCCCATCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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| CDS TCA 90 bp | CGTGACAACTACCTGCCAGCACCATCTTCATCTGAAATCACTCCGTaGTCTGTGACTGTGGATGTCATTTGCTGTCTTGCTGTGGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: RDNYLPAPSSSEITP*SVTVDVICCLAVGA Trigger: GGCCCCCACAGCAAGACAGCAAATGACATCCACAGTCACAGATCACGGAGTGATTTCAGATGAAGATGGTGCTGGCAGGTAGTTGTCACG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000656737.1 ENST00000663451.1 |
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| CDS GCA 90 bp | TACAACACGGGTCCAGGTTCTGGCTCTCTTTCCTCTGAGACATTGTaGAAGTCTCCAGCTTCTCTAAGCGTCTGTAACTTGGGGCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: YNTGPGSGSLSSETL*KSPASLSVCNLGLK Trigger: CTTCAGCCCCAAGTTACAGACGCTTAGAGAAGCTGGAGACTTGCACAATGTCTCAGAGGAAAGAGAGCCAGAACCTGGACCCGTGTTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS CCA 90 bp | TACCATAGGGCCAGACCTTGTCCATGTTGCTCAGTATTGTGCCCTTaGAAGAAGGTCCTTGAATGTTTCGCGGGGCCTTTGAAATGTGGC | + |
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Preference number: 5 (lower is better) Translates to: YHRARPCPCCSVLCP*KKVLECFAGPLKCG Trigger: GCCACATTTCAAAGGCCCCGCGAAACATTCAAGGACCTTCTTCCAAGGGCACAATACTGAGCAACATGGACAAGGTCTGGCCCTATGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS TCA 90 bp | CTTCCTCCAGGGTCTCAGTATGGGAAGTCCCTCTCAGGGTTAACCTaGGTCTCTCCTACTGTAGCTCAGCCTTCATCTCTTCTAAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: LPPGSQYGKSLSGLT*VSPTVAQPSSLLSD Trigger: ATCACTTAGAAGAGATGAAGGCTGAGCTACAGTAGGAGAGACTCAGGTTAACCCTGAGAGGGACTTCCCATACTGAGACCCTGGAGGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS CCA 72 bp | CTGCAGGAGAGGGAGCCTCAGAGTTTCCCCTCAGATTaGGTTAGTAGGGCTGGTGCCCTGTGTTCCCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: LQEREPQSFPSD*VSRAGALCSLP Trigger: GGGCAGGGAACACAGGGCACCAGCCCTACTAACCCAATCTGAGGGGAAACTCTGAGGCTCCCTCTCCTGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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| CDS TCA 72 bp | CTTGGGGCTGAAGATCACGTCTGTCCAGCTGCAGGATaGGACAGACCCTCAGAAACCGAGGGAGCAGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: LGAEDHVCPAAG*DRPSETEGAGG Trigger: CCCACCTGCTCCCTCGGTTTCTGAGGGTCTGTCTCATCCTGCAGCTGGACAGACGTGATCTTCAGCCCCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS GCA 72 bp | GGTAAGAGACCTCAGGTGTCTCCTGCCTCTTCTTCCTaGATCCCATTGCTGGCGCGGCATTCTGGGCACCAG | + |
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Preference number: 6 (lower is better) Translates to: GKRPQVSPASSS*IPLLARHSGHQ Trigger: CTGGTGCCCAGAATGCCGCGCCAGCAATGGGATGCAGGAAGAAGAGGCAGGAGACACCTGAGGTCTCTTACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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| CDS CAA 90 bp | GGTAAGAGACCTCAGGTGTCTCCTGCCTCTTCTTCCTGCATCCCATaGCTGGCGCGGCATTCTGGGCACCAGGGGGCAGAATTGAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: GKRPQVSPASSSCIP*LARHSGHQGAELSF Trigger: GAAGCTCAATTCTGCCCCCTGGTGCCCAGAATGCCGCGCCAGCAATGGGATGCAGGAAGAAGAGGCAGGAGACACCTGAGGTCTCTTACC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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| CDS TCA 72 bp | CCTCCAGCGCCAGCTCCAGTGCTGACCCCTAACCTCTaGCTCGTGACAACTACCTGCCAGCACCATCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: PPAPAPVLTPNL*LVTTTCQHHLH Trigger: ATGAAGATGGTGCTGGCAGGTAGTTGTCACGAGTCAGAGGTTAGGGGTCAGCACTGGAGCTGGCGCTGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656737.1 ENST00000663451.1 |
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| CDS CCA 72 bp | CTCTTCTTCCTGCATCCCATTGCTGGCGCGGCATTCTaGGCACCAGGGGGCAGAATTGAGCTTCACAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: LFFLHPIAGAAF*APGGRIELHKA Trigger: AGCCTTGTGAAGCTCAATTCTGCCCCCTGGTGCCCAGAATGCCGCGCCAGCAATGGGATGCAGGAAGAAGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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| CDS TCA 72 bp | AGCCAGCCCCTCATGCGGGTGCCCCATTCAATTCCATaGTCCAGACCTGACTTTACCATAGGGCCAGACCTT | + |
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Preference number: 6 (lower is better) Translates to: SQPLMRVPHSIP*SRPDFTIGPDL Trigger: AAGGTCTGGCCCTATGGTAAAGTCAGGTCTGGATCATGGAATTGAATGGGGCACCCGCATGAGGGGCTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656737.1 |
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| CDS CCA 72 bp | GTGGGGGCCTCTTTGAGGTCCATGTGTGGGTACATATaGAACCTCCTGGACCATATGTCTCCTCCTCCCCTT | + |
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Preference number: 6 (lower is better) Translates to: VGASLRSMCGYI*NLLDHMSPPPL Trigger: AAGGGGAGGAGGAGACATATGGTCCAGGAGGTTCCATATGTACCCACACATGGACCTCAAAGAGGCCCCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS CAA 90 bp | GGGTACAACACGGGTCCAGGTTCTGGCTCTCTTTCCTCTGAGACATaGTGCAAGTCTCCAGCTTCTCTAAGCGTCTGTAACTTGGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GYNTGPGSGSLSSET*CKSPASLSVCNLGL Trigger: CAGCCCCAAGTTACAGACGCTTAGAGAAGCTGGAGACTTGCACAATGTCTCAGAGGAAAGAGAGCCAGAACCTGGACCCGTGTTGTACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS TCA 72 bp | ATGCGGGTGCCTGGCAACACACCCCATTCAATTCCATaGTCCAGACCTGACTTTACCATAGGGCCAGACCTT | + |
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Preference number: 6 (lower is better) Translates to: MRVPGNTPHSIP*SRPDFTIGPDL Trigger: AAGGTCTGGCCCTATGGTAAAGTCAGGTCTGGATCATGGAATTGAATGGGGTGTGTTGCCAGGCACCCGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000663451.1 |
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| CDS TCA 72 bp | CTGCTCTTAGATCCACTGTCGCTGCGACTTCTCCAGTaGGATCCTTTGCTCAAACTCCATTGCGCTGATGGG | + |
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Preference number: 6 (lower is better) Translates to: LLLDPLSLRLLQ*DPLLKLHCADG Trigger: CCCATCAGCGCAATGGAGTTTGAGCAAAGGATCTCACTGGAGAAGTCGCAGCGACAGTGGATCTAAGAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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| CDS GCA 72 bp | CATAGGGCCAGACCTTGTCCATGTTGCTCAGTATTGTaGCCTTGGAAGAAGGTCCTTGAATGTTTCGCGGGG | + |
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Preference number: 6 (lower is better) Translates to: HRARPCPCCSVL*PWKKVLECFAG Trigger: CCCCGCGAAACATTCAAGGACCTTCTTCCAAGGGCACAATACTGAGCAACATGGACAAGGTCTGGCCCTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS CCA 72 bp | GCCAGACCTTGTCCATGTTGCTCAGTATTGTGCCCTTaGAAGAAGGTCCTTGAATGTTTCGCGGGGCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: ARPCPCCSVLCP*KKVLECFAGPL Trigger: CAAAGGCCCCGCGAAACATTCAAGGACCTTCTTCCAAGGGCACAATACTGAGCAACATGGACAAGGTCTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS CAA 90 bp | TCTGAGACATTGTGCAAGTCTCCAGCTTCTCTAAGCGTCTGTAACTaGGGGCTGAAGATCACGTCTGTCCAGCTGCAGGATGAGACAGAC | + |
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Preference number: 6 (lower is better) Translates to: SETLCKSPASLSVCN*GLKITSVQLQDETD Trigger: GTCTGTCTCATCCTGCAGCTGGACAGACGTGATCTTCAGCCCCAAGTTACAGACGCTTAGAGAAGCTGGAGACTTGCACAATGTCTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS TCA 72 bp | GTACAACACGGGTCCAGGTTCTGGCTCTCTTTCCTCTaGGACATTGTGCAAGTCTCCAGCTTCTCTAAGCGT | + |
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Preference number: 6 (lower is better) Translates to: VQHGSRFWLSFL*DIVQVSSFSKR Trigger: ACGCTTAGAGAAGCTGGAGACTTGCACAATGTCTCAGAGGAAAGAGAGCCAGAACCTGGACCCGTGTTGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS CAA 72 bp | TTGTGCAAGTCTCCAGCTTCTCTAAGCGTCTGTAACTaGGGGCTGAAGATCACGTCTGTCCAGCTGCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: LCKSPASLSVCN*GLKITSVQLQD Trigger: ATCCTGCAGCTGGACAGACGTGATCTTCAGCCCCAAGTTACAGACGCTTAGAGAAGCTGGAGACTTGCACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS TCA 72 bp | CAGCACCATCTTCATCTGAAATCACTCCGTGATCTGTaGCTGTGGATGTCATTTGCTGTCTTGCTGTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: QHHLHLKSLRDL*LWMSFAVLLWG Trigger: CCCCCACAGCAAGACAGCAAATGACATCCACAGTCACAGATCACGGAGTGATTTCAGATGAAGATGGTGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS TCA 72 bp | TGCGCTGATGGGGAAACTGCCAGCACCATCTTCATCTaGAATCACTCCGTGATCTGTGACTGTGGATGTCAT | + |
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Preference number: 6 (lower is better) Translates to: CADGETASTIFI*NHSVICDCGCH Trigger: ATGACATCCACAGTCACAGATCACGGAGTGATTTCAGATGAAGATGGTGCTGGCAGTTTCCCCATCAGCGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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| CDS GCA 72 bp | GGTCCAGGTTCTGGCTCTCTTTCCTCTGAGACATTGTaGAAGTCTCCAGCTTCTCTAAGCGTCTGTAACTTG | + |
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Preference number: 6 (lower is better) Translates to: GPGSGSLSSETL*KSPASLSVCNL Trigger: CAAGTTACAGACGCTTAGAGAAGCTGGAGACTTGCACAATGTCTCAGAGGAAAGAGAGCCAGAACCTGGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000416581.1 ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS CAA 72 bp | TACCATAGGGCCAGACCTTGTCCATGTTGCTCAGTATaGTGCCCTTGGAAGAAGGTCCTTGAATGTTTCGCG | + |
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Preference number: 6 (lower is better) Translates to: YHRARPCPCCSV*CPWKKVLECFA Trigger: CGCGAAACATTCAAGGACCTTCTTCCAAGGGCACAATACTGAGCAACATGGACAAGGTCTGGCCCTATGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000634819.2 ENST00000656737.1 ENST00000663451.1 |
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| CDS CAA 72 bp | TACCATAGGGCCAGACCTTGTCCATGTTGCTCAGTATaGTGCCCTTGGAAGAAGGTCCTTGAATGTTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: YHRARPCPCCSV*CPWKKVLECFL Trigger: CAGGAAACATTCAAGGACCTTCTTCCAAGGGCACAATACTGAGCAACATGGACAAGGTCTGGCCCTATGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416581.1 |
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| CDS TCA 72 bp | TACCTGCCAGCACCATCTTCATCTGAAATCACTCCGTaGTCTGTGACTGTGGATGTCATTTGCTGTCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: YLPAPSSSEITP*SVTVDVICCLA Trigger: AGCAAGACAGCAAATGACATCCACAGTCACAGATCACGGAGTGATTTCAGATGAAGATGGTGCTGGCAGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656737.1 ENST00000663451.1 |
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| CDS GCA 72 bp | CATAGGGCCAGACCTTGTCCATGTTGCTCAGTATTGTaGCCTTGGAAGAAGGTCCTTGAATGTTTCCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: HRARPCPCCSVL*PWKKVLECFLK Trigger: TTTCAGGAAACATTCAAGGACCTTCTTCCAAGGGCACAATACTGAGCAACATGGACAAGGTCTGGCCCTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416581.1 |
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| CDS TCA 72 bp | AAACTGCCAGCACCATCTTCATCTGAAATCACTCCGTaGTCTGTGACTGTGGATGTCATTTGCTGTCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: KLPAPSSSEITP*SVTVDVICCLA Trigger: AGCAAGACAGCAAATGACATCCACAGTCACAGATCACGGAGTGATTTCAGATGAAGATGGTGCTGGCAGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000416581.1 ENST00000634819.2 |
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