Pregenerated sensors for LINC01397 (Homo sapiens)
Ensembl gene IDs: ENSG00000258673Ensembl transcript IDs: ENST00000554808.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCAGAGGGCTCCTTCTGCCTCCTCACACGGCCAGATCTAGGAAGCTaGTGGAGGGCAACTCACTCTGATGCAGCACCTGACAAGGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: SEGSFCLLTRPDLGS*WRATHSDAAPDKGP Trigger: TGGGCCCTTGTCAGGTGCTGCATCAGAGTGAGTTGCCCTCCACCAGCTTCCTAGATCTGGCCGTGTGAGGAGGCAGAAGGAGCCCTCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CCA 90 bp | TGGCCATGTGGGCACTCCCAGCCTCTAGAGGGGAGGACTCAGTGGTaGACAAACCATCAGATGGACAGGATTGGGGCCACACCATGGGAG | + |
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Preference number: 5 (lower is better) Translates to: WPCGHSQPLEGRTQW*TNHQMDRIGATPWE Trigger: CTCCCATGGTGTGGCCCCAATCCTGTCCATCTGATGGTTTGTCCACCACTGAGTCCTCCCCTCTAGAGGCTGGGAGTGCCCACATGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CCA 90 bp | CCTTGGCCATGTGGGCACTCCCAGCCTCTAGAGGGGAGGACTCAGTaGTGGACAAACCATCAGATGGACAGGATTGGGGCCACACCATGG | + |
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Preference number: 5 (lower is better) Translates to: PWPCGHSQPLEGRTQ*WTNHQMDRIGATPW Trigger: CCATGGTGTGGCCCCAATCCTGTCCATCTGATGGTTTGTCCACCACTGAGTCCTCCCCTCTAGAGGCTGGGAGTGCCCACATGGCCAAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS GCA 90 bp | ACAGTGTGGGGGAGACCTGTGGACTCTCTTACTGCAGGGCCTCTCTaGAGAGGGAGCAGGGGGATGGATGAGGTTTCTCCTTGGCCATGT | + |
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Preference number: 5 (lower is better) Translates to: TVWGRPVDSLTAGPL*RGSRGMDEVSPWPC Trigger: ACATGGCCAAGGAGAAACCTCATCCATCCCCCTGCTCCCTCTGCAGAGAGGCCCTGCAGTAAGAGAGTCCACAGGTCTCCCCCACACTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CCA 90 bp | GCCTGGTACACAGAATGCCTTGAATACCCGCCTGTACATACAGTGTaGGGGAGACCTGTGGACTCTCTTACTGCAGGGCCTCTCTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: AWYTECLEYPPVHTV*GRPVDSLTAGPLCR Trigger: TCTGCAGAGAGGCCCTGCAGTAAGAGAGTCCACAGGTCTCCCCCACACTGTATGTACAGGCGGGTATTCAAGGCATTCTGTGTACCAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS GCA 90 bp | CTGCCTTTGTGTCCCACGCTTCCAACACAAGCCTGGTACACAGAATaGCTTGAATACCCGCCTGTACATACAGTGTGGGGGAGACCTGTG | + |
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Preference number: 5 (lower is better) Translates to: LPLCPTLPTQAWYTE*LEYPPVHTVWGRPV Trigger: CACAGGTCTCCCCCACACTGTATGTACAGGCGGGTATTCAAGGCATTCTGTGTACCAGGCTTGTGTTGGAAGCGTGGGACACAAAGGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS TCA 90 bp | TTTGTGTCCCACGCTTCCAACACAAGCCTGGTACACAGAATGCCTTaGATACCCGCCTGTACATACAGTGTGGGGGAGACCTGTGGACTC | + |
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Preference number: 5 (lower is better) Translates to: FVSHASNTSLVHRMP*IPACTYSVGETCGL Trigger: GAGTCCACAGGTCTCCCCCACACTGTATGTACAGGCGGGTATTCAAGGCATTCTGTGTACCAGGCTTGTGTTGGAAGCGTGGGACACAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CCA 90 bp | ACTAGGTCTTCTCTGCCTTTGTGTCCCACGCTTCCAACACAAGCCTaGTACACAGAATGCCTTGAATACCCGCCTGTACATACAGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: TRSSLPLCPTLPTQA*YTECLEYPPVHTVW Trigger: CCACACTGTATGTACAGGCGGGTATTCAAGGCATTCTGTGTACCAGGCTTGTGTTGGAAGCGTGGGACACAAAGGCAGAGAAGACCTAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS TCA 90 bp | GAGGAGTCCAAGACCAGCCTGGACAACATAAGAAGATCTTGCCTGTaGATGCATCTAGCACACCTCATTAGCTCTCAGAGACTGGGACTA | + |
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Preference number: 5 (lower is better) Translates to: EESKTSLDNIRRSCL*MHLAHLISSQRLGL Trigger: TAGTCCCAGTCTCTGAGAGCTAATGAGGTGTGCTAGATGCATTCACAGGCAAGATCTTCTTATGTTGTCCAGGCTGGTCTTGGACTCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CCA 72 bp | GGGCACTCCCAGCCTCTAGAGGGGAGGACTCAGTGGTaGACAAACCATCAGATGGACAGGATTGGGGCCACA | + |
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Preference number: 6 (lower is better) Translates to: GHSQPLEGRTQW*TNHQMDRIGAT Trigger: TGTGGCCCCAATCCTGTCCATCTGATGGTTTGTCCACCACTGAGTCCTCCCCTCTAGAGGCTGGGAGTGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CCA 72 bp | TGTGGGCACTCCCAGCCTCTAGAGGGGAGGACTCAGTaGTGGACAAACCATCAGATGGACAGGATTGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: CGHSQPLEGRTQ*WTNHQMDRIGA Trigger: GGCCCCAATCCTGTCCATCTGATGGTTTGTCCACCACTGAGTCCTCCCCTCTAGAGGCTGGGAGTGCCCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS GCA 72 bp | ATGGGAGATGTCCCCAAAGTCTCAGAGGGCTCCTTCTaGCTCCTCACACGGCCAGATCTAGGAAGCTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: MGDVPKVSEGSF*LLTRPDLGSWW Trigger: CCACCAGCTTCCTAGATCTGGCCGTGTGAGGAGGCAGAAGGAGCCCTCTGAGACTTTGGGGACATCTCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CCA 72 bp | TCCTTCTGCCTCCTCACACGGCCAGATCTAGGAAGCTaGTGGAGGGCAACTCACTCTGATGCAGCACCTGAC | + |
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Preference number: 6 (lower is better) Translates to: SFCLLTRPDLGS*WRATHSDAAPD Trigger: GTCAGGTGCTGCATCAGAGTGAGTTGCCCTCCACCAGCTTCCTAGATCTGGCCGTGTGAGGAGGCAGAAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CCA 72 bp | TTCTGCCTCCTCACACGGCCAGATCTAGGAAGCTGGTaGAGGGCAACTCACTCTGATGCAGCACCTGACAAG | + |
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Preference number: 6 (lower is better) Translates to: FCLLTRPDLGSW*RATHSDAAPDK Trigger: CTTGTCAGGTGCTGCATCAGAGTGAGTTGCCCTCCACCAGCTTCCTAGATCTGGCCGTGTGAGGAGGCAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS TCA 72 bp | CACGCTTCCAACACAAGCCTGGTACACAGAATGCCTTaGATACCCGCCTGTACATACAGTGTGGGGGAGACC | + |
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Preference number: 6 (lower is better) Translates to: HASNTSLVHRMP*IPACTYSVGET Trigger: GGTCTCCCCCACACTGTATGTACAGGCGGGTATTCAAGGCATTCTGTGTACCAGGCTTGTGTTGGAAGCGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS GCA 72 bp | TGTCCCACGCTTCCAACACAAGCCTGGTACACAGAATaGCTTGAATACCCGCCTGTACATACAGTGTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: CPTLPTQAWYTE*LEYPPVHTVWG Trigger: CCCCCACACTGTATGTACAGGCGGGTATTCAAGGCATTCTGTGTACCAGGCTTGTGTTGGAAGCGTGGGACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CCA 72 bp | ACAGAATGCCTTGAATACCCGCCTGTACATACAGTGTaGGGGAGACCTGTGGACTCTCTTACTGCAGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: TECLEYPPVHTV*GRPVDSLTAGP Trigger: AGGCCCTGCAGTAAGAGAGTCCACAGGTCTCCCCCACACTGTATGTACAGGCGGGTATTCAAGGCATTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS CAA 90 bp | CTTTGTGTCCCACGCTTCCAACACAAGCCTGGTACACAGAATGCCTaGAATACCCGCCTGTACATACAGTGTGGGGGAGACCTGTGGACT | + |
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Preference number: 6 (lower is better) Translates to: LCVPRFQHKPGTQNA*NTRLYIQCGGDLWT Trigger: AGTCCACAGGTCTCCCCCACACTGTATGTACAGGCGGGTATTCAAGGCATTCTGTGTACCAGGCTTGTGTTGGAAGCGTGGGACACAAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS GCA 72 bp | CAAGGGCCCACATGTTTCCCGTGCAGAGAACAAATTTaGCCCATTAAAGCGTTACTCTGTTGGGGAAAAGAC | + |
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Preference number: 6 (lower is better) Translates to: QGPTCFPCREQI*PIKALLCWGKD Trigger: GTCTTTTCCCCAACAGAGTAACGCTTTAATGGGGCAAATTTGTTCTCTGCACGGGAAACATGTGGGCCCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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| CDS TCA 72 bp | AAGACCAGCCTGGACAACATAAGAAGATCTTGCCTGTaGATGCATCTAGCACACCTCATTAGCTCTCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: KTSLDNIRRSCL*MHLAHLISSQR Trigger: TCTCTGAGAGCTAATGAGGTGTGCTAGATGCATTCACAGGCAAGATCTTCTTATGTTGTCCAGGCTGGTCTT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554808.1 |
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