Pregenerated sensors for LINC01396 (Homo sapiens)
Ensembl gene IDs: ENSG00000273396Ensembl transcript IDs: ENST00000609099.1, ENST00000652410.1, ENST00000662851.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGTCGTTCAGCATGGTGGGATCCCCACTGCACATCAGGGTCTGTGTaGCTCCAGGGCAAGGGCTCTTTGGCCCCACCACACGAGACTTGG | + |
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Preference number: 5 (lower is better) Translates to: SRSAWWDPHCTSGSV*LQGKGSLAPPHETW Trigger: CCAAGTCTCGTGTGGTGGGGCCAAAGAGCCCTTGCCCTGGAGTCACACAGACCCTGATGTGCAGTGGGGATCCCACCATGCTGAACGACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS GCA 90 bp | AGAGACTGGCAAGGCCGTCTCCCTCTGAAACCCTGGGTAGAGGCTTaGCCTGCTTCTCTGGGCTTTGGTGGTGGCCAGCAATTCCTTGGG | + |
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Preference number: 5 (lower is better) Translates to: RDWQGRLPLKPWVEA*PASLGFGGGQQFLG Trigger: CCCAAGGAATTGCTGGCCACCACCAAAGCCCAGAGAAGCAGGGCAAGCCTCTACCCAGGGTTTCAGAGGGAGACGGCCTTGCCAGTCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS TCA 90 bp | ACATGGCGATCCCTCTGTGTGTCTGTTTCCACATTTCTGTCTTCTTaGAGGACAGCAGTCATATTGGATGAAGCGTCCACCTACTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: TWRSLCVSVSTFLSS*RTAVILDEASTYSN Trigger: ATTGGAGTAGGTGGACGCTTCATCCAATATGACTGCTGTCCTTCAAGAAGACAGAAATGTGGAAACAGACACACAGAGGGATCGCCATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS TCA 90 bp | ATGTCTTCATTTACTTCATCTTCACAGCAACTCTATTTTTATCCCTaGGAGAGCTCTCTTGGCCCTACTCTAAGTTCTCATCCAGGGACT | + |
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Preference number: 5 (lower is better) Translates to: MSSFTSSSQQLYFYP*ESSLGPTLSSHPGT Trigger: AGTCCCTGGATGAGAACTTAGAGTAGGGCCAAGAGAGCTCTCTCAGGGATAAAAATAGAGTTGCTGTGAAGATGAAGTAAATGAAGACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000609099.1 |
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| CDS CCA 72 bp | ACCCTGGGTAGAGGCTTGCCCTGCTTCTCTGGGCTTTaGTGGTGGCCAGCAATTCCTTGGGGTTCCCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: TLGRGLPCFSGL*WWPAIPWGSLG Trigger: ACCCAGGGAACCCCAAGGAATTGCTGGCCACCACCAAAGCCCAGAGAAGCAGGGCAAGCCTCTACCCAGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS GCA 72 bp | CCGTCTCCCTCTGAAACCCTGGGTAGAGGCTTGCCCTaGTTCTCTGGGCTTTGGTGGTGGCCAGCAATTCCT | + |
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Preference number: 6 (lower is better) Translates to: PSPSETLGRGLP*FSGLWWWPAIP Trigger: AGGAATTGCTGGCCACCACCAAAGCCCAGAGAAGCAGGGCAAGCCTCTACCCAGGGTTTCAGAGGGAGACGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS CCA 72 bp | GGTAGAGGCTTGCCCTGCTTCTCTGGGCTTTGGTGGTaGCCAGCAATTCCTTGGGGTTCCCTGGGTTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: GRGLPCFSGLWW*PAIPWGSLGCS Trigger: GCTACAACCCAGGGAACCCCAAGGAATTGCTGGCCACCACCAAAGCCCAGAGAAGCAGGGCAAGCCTCTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS CCA 72 bp | CTGGGTAGAGGCTTGCCCTGCTTCTCTGGGCTTTGGTaGTGGCCAGCAATTCCTTGGGGTTCCCTGGGTTGT | + |
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Preference number: 6 (lower is better) Translates to: LGRGLPCFSGLW*WPAIPWGSLGC Trigger: ACAACCCAGGGAACCCCAAGGAATTGCTGGCCACCACCAAAGCCCAGAGAAGCAGGGCAAGCCTCTACCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS TCA 72 bp | GGGGTTCCCTGGGTTGTAGCTGCTCACTCCAGTGTCTaGCTCAGTCTCTCATGGTGTTCCCTTGTGCATCCC | + |
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Preference number: 6 (lower is better) Translates to: GVPWVVAAHSSV*LSLSWCSLVHP Trigger: GGGATGCACAAGGGAACACCATGAGAGACTGAGTCAGACACTGGAGTGAGCAGCTACAACCCAGGGAACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS CCA 72 bp | TGCTTCTCTGGGCTTTGGTGGTGGCCAGCAATTCCTTaGGGTTCCCTGGGTTGTAGCTGCTCACTCCAGTGT | + |
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Preference number: 6 (lower is better) Translates to: CFSGLWWWPAIP*GSLGCSCSLQC Trigger: ACACTGGAGTGAGCAGCTACAACCCAGGGAACCCCAAGGAATTGCTGGCCACCACCAAAGCCCAGAGAAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS GCA 72 bp | TGGCCAGCAATTCCTTGGGGTTCCCTGGGTTGTAGCTaGTCACTCCAGTGTCTGACTCAGTCTCTCATGGTG | + |
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Preference number: 6 (lower is better) Translates to: WPAIPWGSLGCS*SLQCLTQSLMV Trigger: CACCATGAGAGACTGAGTCAGACACTGGAGTGAGCAGCTACAACCCAGGGAACCCCAAGGAATTGCTGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS CCA 72 bp | CACAATCTGAGGGCTGGAAGTCTGAAACCAAGAGACTaGCAAGGCCGTCTCCCTCTGAAACCCTGGGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: HNLRAGSLKPRD*QGRLPLKPWVE Trigger: CTCTACCCAGGGTTTCAGAGGGAGACGGCCTTGCCAGTCTCTTGGTTTCAGACTTCCAGCCCTCAGATTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS CAA 72 bp | GACTCTGAGCTAAGAGCGGCCCTGGAGATGTGGACCTaGGTTAGTCCTCCCAGCCACATGGGGTTTACATCA | + |
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Preference number: 6 (lower is better) Translates to: DSELRAALEMWT*VSPPSHMGFTS Trigger: TGATGTAAACCCCATGTGGCTGGGAGGACTAACCAAGGTCCACATCTCCAGGGCCGCTCTTAGCTCAGAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000609099.1 ENST00000652410.1 |
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| CDS CAA 90 bp | CCTCAGAAAGACTCTGAGCTAAGAGCGGCCCTGGAGATGTGGACCTaGGTTAGTCCTCCCAGCCACATGGGGTTTACATCACAGTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PQKDSELRAALEMWT*VSPPSHMGFTSQSP Trigger: TGGAGACTGTGATGTAAACCCCATGTGGCTGGGAGGACTAACCAAGGTCCACATCTCCAGGGCCGCTCTTAGCTCAGAGTCTTTCTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000609099.1 ENST00000652410.1 |
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| CDS CAA 90 bp | AGCTCTCTTGGCCCTACTCTAAGTTCTCATCCAGGGACTGGAAGCTaGCGGCTGACATCTTTGGATCTTACCTATCTGAGAGGGCAGGTT | + |
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Preference number: 6 (lower is better) Translates to: SSLGPTLSSHPGTGS*RLTSLDLTYLRGQV Trigger: AACCTGCCCTCTCAGATAGGTAAGATCCAAAGATGTCAGCCGCAAGCTTCCAGTCCCTGGATGAGAACTTAGAGTAGGGCCAAGAGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609099.1 |
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| CDS CCA 72 bp | CAGGGCAAGGGCTCTTTGGCCCCACCACACGAGACTTaGAATCGAAGTTGTCCTGTTAGGATGCATATTCAT | + |
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Preference number: 6 (lower is better) Translates to: QGKGSLAPPHET*NRSCPVRMHIH Trigger: ATGAATATGCATCCTAACAGGACAACTTCGATTCCAAGTCTCGTGTGGTGGGGCCAAAGAGCCCTTGCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS CCA 72 bp | CTCTCTTGGCCCTACTCTAAGTTCTCATCCAGGGACTaGAAGCTTGCGGCTGACATCTTTGGATCTTACCTA | + |
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Preference number: 6 (lower is better) Translates to: LSWPYSKFSSRD*KLAADIFGSYL Trigger: TAGGTAAGATCCAAAGATGTCAGCCGCAAGCTTCCAGTCCCTGGATGAGAACTTAGAGTAGGGCCAAGAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609099.1 |
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| CDS CAA 72 bp | TCTCATCCAGGGACTGGAAGCTTGCGGCTGACATCTTaGGATCTTACCTATCTGAGAGGGCAGGTTCCAATA | + |
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Preference number: 6 (lower is better) Translates to: SHPGTGSLRLTS*DLTYLRGQVPI Trigger: TATTGGAACCTGCCCTCTCAGATAGGTAAGATCCAAAGATGTCAGCCGCAAGCTTCCAGTCCCTGGATGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609099.1 |
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| CDS CAA 72 bp | GGCCCTACTCTAAGTTCTCATCCAGGGACTGGAAGCTaGCGGCTGACATCTTTGGATCTTACCTATCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: GPTLSSHPGTGS*RLTSLDLTYLR Trigger: TCTCAGATAGGTAAGATCCAAAGATGTCAGCCGCAAGCTTCCAGTCCCTGGATGAGAACTTAGAGTAGGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609099.1 |
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| CDS CAA 72 bp | CCCATTCACGTCCTTTTGCAATGCCCTCATCCAATTTaGTACACTAGCCGGACGGGCATCATTATCCCCACT | + |
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Preference number: 6 (lower is better) Translates to: PIHVLLQCPHPI*YTSRTGIIIPT Trigger: AGTGGGGATAATGATGCCCGTCCGGCTAGTGTACAAAATTGGATGAGGGCATTGCAAAAGGACGTGAATGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS GCA 72 bp | GCTCCAAGTGAAATAATGGAAATGAAAACTCCCAGGTaGCCCAGTTCCTTTAGATGTTGTGGCCCATTCACG | + |
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Preference number: 6 (lower is better) Translates to: APSEIMEMKTPR*PSSFRCCGPFT Trigger: CGTGAATGGGCCACAACATCTAAAGGAACTGGGGCACCTGGGAGTTTTCATTTCCATTATTTCACTTGGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000609099.1 ENST00000652410.1 ENST00000662851.1 |
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| CDS CCA 72 bp | ACAGCAACTCTATTTTTATCCCTGAGAGAGCTCTCTTaGCCCTACTCTAAGTTCTCATCCAGGGACTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: TATLFLSLRELS*PYSKFSSRDWK Trigger: CTTCCAGTCCCTGGATGAGAACTTAGAGTAGGGCCAAGAGAGCTCTCTCAGGGATAAAAATAGAGTTGCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000609099.1 |
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| CDS GCA 72 bp | AGTTCCTTTAGATGTTGTGGCCCATTCACGTCCTTTTaGAATGCCCTCATCCAATTTTGTACACTAGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: SSFRCCGPFTSF*NALIQFCTLAG Trigger: TCCGGCTAGTGTACAAAATTGGATGAGGGCATTGCAAAAGGACGTGAATGGGCCACAACATCTAAAGGAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000652410.1 ENST00000662851.1 |
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| CDS CCA 72 bp | AACTCTATTTTTATCCCTCAAGTGATCCACGCATCTTaGCCTTCCAAAGTGTTGAGATTACAGGCGAGAGAC | + |
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Preference number: 6 (lower is better) Translates to: NSIFIPQVIHAS*PSKVLRLQARD Trigger: GTCTCTCGCCTGTAATCTCAACACTTTGGAAGGCCAAGATGCGTGGATCACTTGAGGGATAAAAATAGAGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000662851.1 |
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| CDS CAA 72 bp | CAACTCTATTTTTATCCCTCAAGTGATCCACGCATCTaGGCCTTCCAAAGTGTTGAGATTACAGGCGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: QLYFYPSSDPRI*AFQSVEITGER Trigger: TCTCTCGCCTGTAATCTCAACACTTTGGAAGGCCAAGATGCGTGGATCACTTGAGGGATAAAAATAGAGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000662851.1 |
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| CDS TCA 72 bp | CACGTATTAAACAATTACTGTTGCCAAGCGTTGTTCTaGGTTCTCAGCATGTCTTCATTTACTTCATCTTCA | + |
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Preference number: 6 (lower is better) Translates to: HVLNNYCCQALF*VLSMSSFTSSS Trigger: TGAAGATGAAGTAAATGAAGACATGCTGAGAACTCAGAACAACGCTTGGCAACAGTAATTGTTTAATACGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000609099.1 ENST00000652410.1 ENST00000662851.1 |
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