Pregenerated sensors for LINC01393 (Homo sapiens)
Ensembl gene IDs: ENSG00000225535Ensembl transcript IDs: ENST00000419905.5, ENST00000435981.5, ENST00000460471.1, ENST00000467677.1, ENST00000659423.1, ENST00000660905.1, ENST00000668211.1, ENST00000669990.1
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGAGAGGCCCACATCTGGCAAGGGGCTTCTTGCTGTGTCATCCCATaGCAGAAGGCAGAAGGACAAGAAAGCATGAGAGCAAGCCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: REAHIWQGASCCVIP*QKAEGQESMRASQQ Trigger: TTGCTGGCTTGCTCTCATGCTTTCTTGTCCTTCTGCCTTCTGCCATGGGATGACACAGCAAGAAGCCCCTTGCCAGATGTGGGCCTCTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435981.5 |
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| CDS GCA 90 bp | GGTGGAGCTGAGGCGATAATGCTCGCTTGTCCACCATTCACCTCCTaGTGTGAAGCTCGGTTCCTAAGAGGTCACAGATGGGTATTGGTA | + |
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Preference number: 5 (lower is better) Translates to: GGAEAIMLACPPFTS*CEARFLRGHRWVLV Trigger: TACCAATACCCATCTGTGACCTCTTAGGAACCGAGCTTCACAGCAGGAGGTGAATGGTGGACAAGCGAGCATTATCGCCTCAGCTCCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS GCA 90 bp | ATGGTTGGGCTTTGGCAAGGGTTCACTTCCTGGCTTGCAGATAAGTaGTTTCTCCCTGTATCCTCACATGGTGGGGAGGGAGAGTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: MVGLWQGFTSWLADK*FLPVSSHGGEGECV Trigger: CACACACTCTCCCTCCCCACCATGTGAGGATACAGGGAGAAAGCACTTATCTGCAAGCCAGGAAGTGAACCCTTGCCAAAGCCCAACCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659423.1 |
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| CDS GCA 90 bp | AGAGGAGAGTGTGGAGTTCTGGAGTCTGAAAGTTTGAGATCAGGGTaGCTGCATGGTTGGGCTTTGGCAAGGGTTCACTTCCTGGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: RGECGVLESESLRSG*LHGWALARVHFLAC Trigger: GCAAGCCAGGAAGTGAACCCTTGCCAAAGCCCAACCATGCAGGCACCCTGATCTCAAACTTTCAGACTCCAGAACTCCACACTCTCCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659423.1 |
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| CDS GCA 90 bp | GCAGAGAGAACAGCAAGTGCAGAGTCCTCAATCTGTGGGCTTGTATaGTGCGTACCAGGAAAGACCAAAGAGGAGAGTGTGGCTGACAGG | + |
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Preference number: 5 (lower is better) Translates to: AERTASAESSICGLV*CVPGKTKEESVADR Trigger: CCTGTCAGCCACACTCTCCTCTTTGGTCTTTCCTGGTACGCAGCATACAAGCCCACAGATTGAGGACTCTGCACTTGCTGTTCTCTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660905.1 |
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| CDS GCA 90 bp | TGGGTATTGGTAGACAGCCGGGGGTTTTGGGACCTCTTTAAGTGGTaGTGGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: WVLVDSRGFWDLFKW*WMVSGQDISVVRLL Trigger: GAGCAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACTTAAAGAGGTCCCAAAACCCCCGGCTGTCTACCAATACCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS GCA 90 bp | GCAGAGAGAACAGCAAGTGCAGAGTCCTCAATCTGTGGGCTTGTATaGTGCGTACCAGGAAAGACCAAAGAGGAGAGTGTGGAGTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: AERTASAESSICGLV*CVPGKTKEESVEFW Trigger: CCAGAACTCCACACTCTCCTCTTTGGTCTTTCCTGGTACGCAGCATACAAGCCCACAGATTGAGGACTCTGCACTTGCTGTTCTCTCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659423.1 |
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| CDS CCA 90 bp | GTATTGGTAGACAGCCGGGGGTTTTGGGACCTCTTTAAGTGGTGCTaGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTGCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: VLVDSRGFWDLFKWC*MVSGQDISVVRLLL Trigger: AAGGAGCAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACTTAAAGAGGTCCCAAAACCCCCGGCTGTCTACCAATAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS CCA 90 bp | AGATGGGTATTGGTAGACAGCCGGGGGTTTTGGGACCTCTTTAAGTaGTGCTGGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTG | + |
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Preference number: 5 (lower is better) Translates to: RWVLVDSRGFWDLFK*CWMVSGQDISVVRL Trigger: CAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACTTAAAGAGGTCCCAAAACCCCCGGCTGTCTACCAATACCCATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS CCA 90 bp | CCAGGAAAGACCAAAGAGGAGAGTGTGGCTTTAAGTGGTGCTGGATaGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTGCTCCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: PGKTKEESVALSGAG*LVVRISVLSACSFW Trigger: CCAGAAGGAGCAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACTTAAAGCCACACTCTCCTCTTTGGTCTTTCCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000467677.1 |
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| CDS GCA 90 bp | GAGAGAACAGCAAGTGCAGAGTCCTCAATCTGTGGGCTTGTATGCTaGGTACCAGGAAAGACCAAAGAGGAGAGTGTGGCAATTAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: ERTASAESSICGLVC*VPGKTKEESVAISC Trigger: ACAGCTAATTGCCACACTCTCCTCTTTGGTCTTTCCTGGTACGCAGCATACAAGCCCACAGATTGAGGACTCTGCACTTGCTGTTCTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000419905.5 ENST00000435981.5 ENST00000668211.1 ENST00000669990.1 |
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| CDS GCA 90 bp | GAGAGAACAGCAAGTGCAGAGTCCTCAATCTGTGGGCTTGTATGCTaGGTACCAGGAAAGACCAAAGAGGAGAGTGTGGCTTTAAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: ERTASAESSICGLVC*VPGKTKEESVALSG Trigger: ACCACTTAAAGCCACACTCTCCTCTTTGGTCTTTCCTGGTACGCAGCATACAAGCCCACAGATTGAGGACTCTGCACTTGCTGTTCTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000467677.1 |
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| CDS CCA 90 bp | CGTACCAGGAAAGACCAAAGAGGAGAGTGTGGCTTTAAGTGGTGCTaGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTGCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: RTRKDQRGECGFKWC*MVSGQDISVVRLLL Trigger: AAGGAGCAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACTTAAAGCCACACTCTCCTCTTTGGTCTTTCCTGGTACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000467677.1 |
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| CDS GCA 90 bp | AGTGGTGCTGGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTaGTCCTTCTGGGATAGGACAACAGTATTCTTCAATGGCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SGAGWLVVRISVLSA*SFWDRTTVFFNGSS Trigger: AGAGGAGCCATTGAAGAATACTGTTGTCCTATCCCAGAAGGAGCAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460471.1 |
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| CDS GCA 90 bp | AGTGGTGCTGGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTaGTCCTTCTGGGATAGGACAACAGTATTCTTCAATGGCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: SGAGWLVVRISVLSA*SFWDRTTVFFNGSS Trigger: TGAGGAGCCATTGAAGAATACTGTTGTCCTATCCCAGAAGGAGCAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000660905.1 ENST00000668211.1 ENST00000669990.1 |
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| CDS CCA 90 bp | GTGGGCTTGTATGCTGCGTACCAGGAAAGACCAAAGAGGAGAGTGTaGCAATTAGCTGTCTTCTCCATATGGCATTTAGGTTTCAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: VGLYAAYQERPKRRV*QLAVFSIWHLGFSH Trigger: GTGGCTGAAACCTAAATGCCATATGGAGAAGACAGCTAATTGCCACACTCTCCTCTTTGGTCTTTCCTGGTACGCAGCATACAAGCCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000419905.5 ENST00000435981.5 ENST00000668211.1 ENST00000669990.1 |
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| CDS CCA 90 bp | GGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTGCTCCTTCTaGGATAGGACAACAGTATTCTTCAATGGCTCCTCTTTGATACAG | + |
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Preference number: 5 (lower is better) Translates to: GWLVVRISVLSACSF*DRTTVFFNGSSLIQ Trigger: CTGTATCAAAGAGGAGCCATTGAAGAATACTGTTGTCCTATCCCAGAAGGAGCAAGCGGACAACACTGATATCCTGACCACTAACCATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460471.1 |
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| CDS TCA 90 bp | TCTACTATGTGCCAGGCATTGTTCCAAACATTTGGCATAAATCAGTaGATAAAACAATCAAAGATCTCTGTGTTCATGGGGTTTACATCC | + |
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Preference number: 5 (lower is better) Translates to: STMCQALFQTFGINQ*IKQSKISVFMGFTS Trigger: GGATGTAAACCCCATGAACACAGAGATCTTTGATTGTTTTATTCACTGATTTATGCCAAATGTTTGGAACAATGCCTGGCACATAGTAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000435981.5 ENST00000467677.1 ENST00000659423.1 ENST00000660905.1 ENST00000668211.1 ENST00000669990.1 |
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| CDS TCA 90 bp | AAGAAAGAATGGAAAGAGGGAAGAAATGTCAGATGGATCCCATGCTaGAAATTAGAGATGTTATGGAGGAAGTCCGAAACAGATTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: KKEWKEGRNVRWIPC*KLEMLWRKSETDSL Trigger: TAAAGAATCTGTTTCGGACTTCCTCCATAACATCTCTAATTTTCAGCATGGGATCCATCTGACATTTCTTCCCTCTTTCCATTCTTTCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460471.1 |
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| CDS GCA 72 bp | CAAGGTCGAGAGGCCCACATCTGGCAAGGGGCTTCTTaGTGTGTCATCCCATGGCAGAAGGCAGAAGGACAA | + |
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Preference number: 6 (lower is better) Translates to: QGREAHIWQGAS*CVIPWQKAEGQ Trigger: TTGTCCTTCTGCCTTCTGCCATGGGATGACACAGCAAGAAGCCCCTTGCCAGATGTGGGCCTCTCGACCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000419905.5 ENST00000435981.5 |
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| CDS CAA 90 bp | AGGGTGCCTGCATGGTTGGGCTTTGGCAAGGGTTCACTTCCTGGCTaGCAGATAAGTGCTTTCTCCCTGTATCCTCACATGGTGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: RVPAWLGFGKGSLPG*QISAFSLYPHMVGR Trigger: CCTCCCCACCATGTGAGGATACAGGGAGAAAGCACTTATCTGCAAGCCAGGAAGTGAACCCTTGCCAAAGCCCAACCATGCAGGCACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659423.1 |
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| CDS TCA 72 bp | ACCAAAGAGGAGAGTGTGGCTGACAGGAGGTGGAGCTaGGGCGATAATGCTCGCTTGTCCACCATTCACCTC | + |
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Preference number: 6 (lower is better) Translates to: TKEESVADRRWS*GDNARLSTIHL Trigger: GAGGTGAATGGTGGACAAGCGAGCATTATCGCCTCAGCTCCACCTCCTGTCAGCCACACTCTCCTCTTTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660905.1 |
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| CDS CCA 72 bp | TCCTGCTGTGAAGCTCGGTTCCTAAGAGGTCACAGATaGGTATTGGTAGACAGCCGGGGGTTTTGGGACCTC | + |
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Preference number: 6 (lower is better) Translates to: SCCEARFLRGHR*VLVDSRGFWDL Trigger: GAGGTCCCAAAACCCCCGGCTGTCTACCAATACCCATCTGTGACCTCTTAGGAACCGAGCTTCACAGCAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS CAA 90 bp | ACCTCCTGCTGTGAAGCTCGGTTCCTAAGAGGTCACAGATGGGTATaGGTAGACAGCCGGGGGTTTTGGGACCTCTTTAAGTGGTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: TSCCEARFLRGHRWV*VDSRGFWDLFKWCW Trigger: CCAGCACCACTTAAAGAGGTCCCAAAACCCCCGGCTGTCTACCAATACCCATCTGTGACCTCTTAGGAACCGAGCTTCACAGCAGGAGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS GCA 72 bp | GAGGCGATAATGCTCGCTTGTCCACCATTCACCTCCTaGTGTGAAGCTCGGTTCCTAAGAGGTCACAGATGG | + |
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Preference number: 6 (lower is better) Translates to: EAIMLACPPFTS*CEARFLRGHRW Trigger: CCATCTGTGACCTCTTAGGAACCGAGCTTCACAGCAGGAGGTGAATGGTGGACAAGCGAGCATTATCGCCTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS CCA 72 bp | GACAGCCGGGGGTTTTGGGACCTCTTTAAGTGGTGCTaGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGC | + |
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Preference number: 6 (lower is better) Translates to: DSRGFWDLFKWC*MVSGQDISVVR Trigger: GCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACTTAAAGAGGTCCCAAAACCCCCGGCTGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS CCA 72 bp | ACTTGGACAAGGCGAAGGAGTTGGCAGGAGTCTATCTaGAGCCATAGAGCTCCAGGCAGAGAGAACAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: TWTRRRSWQESI*SHRAPGRENSK Trigger: CTTGCTGTTCTCTCTGCCTGGAGCTCTATGGCTCCAGATAGACTCCTGCCAACTCCTTCGCCTTGTCCAAGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000419905.5 ENST00000435981.5 ENST00000467677.1 ENST00000659423.1 ENST00000660905.1 ENST00000668211.1 ENST00000669990.1 |
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| CDS GCA 72 bp | CTTTGGCAAGGGTTCACTTCCTGGCTTGCAGATAAGTaGTTTCTCCCTGTATCCTCACATGGTGGGGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: LWQGFTSWLADK*FLPVSSHGGEG Trigger: TCCCTCCCCACCATGTGAGGATACAGGGAGAAAGCACTTATCTGCAAGCCAGGAAGTGAACCCTTGCCAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659423.1 |
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| CDS CCA 72 bp | CACATCTGGCAAGGGGCTTCTTGCTGTGTCATCCCATaGCAGAAGGCAGAAGGACAAGAAAGCATGAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: HIWQGASCCVIP*QKAEGQESMRA Trigger: TGCTCTCATGCTTTCTTGTCCTTCTGCCTTCTGCCATGGGATGACACAGCAAGAAGCCCCTTGCCAGATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000419905.5 ENST00000435981.5 |
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| CDS CAA 90 bp | AGGAAAGACCAAAGAGGAGAGTGTGGAGTTCTGGAGTCTGAAAGTTaGAGATCAGGGTGCCTGCATGGTTGGGCTTTGGCAAGGGTTCAC | + |
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Preference number: 6 (lower is better) Translates to: RKDQRGECGVLESES*RSGCLHGWALARVH Trigger: GTGAACCCTTGCCAAAGCCCAACCATGCAGGCACCCTGATCTCAAACTTTCAGACTCCAGAACTCCACACTCTCCTCTTTGGTCTTTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659423.1 |
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| CDS CCA 72 bp | GGCAGAGAGAACAGCAAGTGCAGAGTCCTCAATCTGTaGGCTTGTATGCTGCGTACCAGGAAAGACCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: GRENSKCRVLNL*ACMLRTRKDQR Trigger: TCTTTGGTCTTTCCTGGTACGCAGCATACAAGCCCACAGATTGAGGACTCTGCACTTGCTGTTCTCTCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000419905.5 ENST00000435981.5 ENST00000467677.1 ENST00000659423.1 ENST00000660905.1 ENST00000668211.1 ENST00000669990.1 |
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| CDS CAA 72 bp | TGTGAAGCTCGGTTCCTAAGAGGTCACAGATGGGTATaGGTAGACAGCCGGGGGTTTTGGGACCTCTTTAAG | + |
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Preference number: 6 (lower is better) Translates to: CEARFLRGHRWV*VDSRGFWDLFK Trigger: CTTAAAGAGGTCCCAAAACCCCCGGCTGTCTACCAATACCCATCTGTGACCTCTTAGGAACCGAGCTTCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS CAA 72 bp | GCATGGTTGGGCTTTGGCAAGGGTTCACTTCCTGGCTaGCAGATAAGTGCTTTCTCCCTGTATCCTCACATG | + |
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Preference number: 6 (lower is better) Translates to: AWLGFGKGSLPG*QISAFSLYPHM Trigger: CATGTGAGGATACAGGGAGAAAGCACTTATCTGCAAGCCAGGAAGTGAACCCTTGCCAAAGCCCAACCATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659423.1 |
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| CDS TCA 72 bp | GATAATGCTCGCTTGTCCACCATTCACCTCCTGCTGTaGAGCTCGGTTCCTAAGAGGTCACAGATGGGTATT | + |
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Preference number: 6 (lower is better) Translates to: DNARLSTIHLLL*SSVPKRSQMGI Trigger: AATACCCATCTGTGACCTCTTAGGAACCGAGCTTCACAGCAGGAGGTGAATGGTGGACAAGCGAGCATTATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000419905.5 ENST00000460471.1 ENST00000660905.1 |
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| CDS CCA 72 bp | CATTTAATGAAGGTAACTTGGACAAGGCGAAGGAGTTaGCAGGAGTCTATCTGGAGCCATAGAGCTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: HLMKVTWTRRRS*QESIWSHRAPG Trigger: GCCTGGAGCTCTATGGCTCCAGATAGACTCCTGCCAACTCCTTCGCCTTGTCCAAGTTACCTTCATTAAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000419905.5 ENST00000435981.5 ENST00000467677.1 ENST00000659423.1 ENST00000660905.1 ENST00000668211.1 ENST00000669990.1 |
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| CDS CCA 72 bp | ACCAAAGAGGAGAGTGTGGCTTTAAGTGGTGCTGGATaGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: TKEESVALSGAG*LVVRISVLSAC Trigger: GCAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACTTAAAGCCACACTCTCCTCTTTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000467677.1 |
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| CDS CAA 72 bp | AGTGGTGCTGGATGGTTAGTGGTCAGGATATCAGTGTaGTCCGCTTGCTCCTTCTGGGATAGGACAACAGTA | + |
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Preference number: 6 (lower is better) Translates to: SGAGWLVVRISV*SACSFWDRTTV Trigger: TACTGTTGTCCTATCCCAGAAGGAGCAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000419905.5 ENST00000435981.5 ENST00000460471.1 ENST00000467677.1 ENST00000660905.1 ENST00000668211.1 ENST00000669990.1 |
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| CDS CCA 72 bp | GTGGTCAGGATATCAGTGTTGTCCGCTTGCTCCTTCTaGGATAGGACAACAGTATTCTTCAATGGCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: VVRISVLSACSF*DRTTVFFNGSS Trigger: AGAGGAGCCATTGAAGAATACTGTTGTCCTATCCCAGAAGGAGCAAGCGGACAACACTGATATCCTGACCAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460471.1 |
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| CDS CCA 72 bp | AAAGACCAAAGAGGAGAGTGTGGCTTTAAGTGGTGCTaGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGC | + |
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Preference number: 6 (lower is better) Translates to: KDQRGECGFKWC*MVSGQDISVVR Trigger: GCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACTTAAAGCCACACTCTCCTCTTTGGTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000467677.1 |
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| CDS CCA 72 bp | GTGGTCAGGATATCAGTGTTGTCCGCTTGCTCCTTCTaGGATAGGACAACAGTATTCTTCAATGGCTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: VVRISVLSACSF*DRTTVFFNGSS Trigger: TGAGGAGCCATTGAAGAATACTGTTGTCCTATCCCAGAAGGAGCAAGCGGACAACACTGATATCCTGACCAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000660905.1 ENST00000668211.1 ENST00000669990.1 |
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| CDS TCA 72 bp | TCTGTTATTCTTTTTAAAACTGACAGGAGGTGGAGCTaGGGCGATAATGCTCGCTTGTCCACCATTCACCTC | + |
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Preference number: 6 (lower is better) Translates to: SVILFKTDRRWS*GDNARLSTIHL Trigger: GAGGTGAATGGTGGACAAGCGAGCATTATCGCCTCAGCTCCACCTCCTGTCAGTTTTAAAAAGAATAACAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000419905.5 ENST00000460471.1 |
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| CDS GCA 72 bp | GGATGGTTAGTGGTCAGGATATCAGTGTTGTCCGCTTaGTCCTTCTGGGATAGGACAACAGTATTCTTCAAT | + |
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Preference number: 6 (lower is better) Translates to: GWLVVRISVLSA*SFWDRTTVFFN Trigger: ATTGAAGAATACTGTTGTCCTATCCCAGAAGGAGCAAGCGGACAACACTGATATCCTGACCACTAACCATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000419905.5 ENST00000435981.5 ENST00000460471.1 ENST00000467677.1 ENST00000660905.1 ENST00000668211.1 ENST00000669990.1 |
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| CDS CCA 72 bp | TATGCTGCGTACCAGGAAAGACCAAAGAGGAGAGTGTaGCAATTAGCTGTCTTCTCCATATGGCATTTAGGT | + |
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Preference number: 6 (lower is better) Translates to: YAAYQERPKRRV*QLAVFSIWHLG Trigger: ACCTAAATGCCATATGGAGAAGACAGCTAATTGCCACACTCTCCTCTTTGGTCTTTCCTGGTACGCAGCATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000419905.5 ENST00000435981.5 ENST00000668211.1 ENST00000669990.1 |
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| CDS CAA 72 bp | GATGTTATGGAGGAAGTCCGAAACAGATTCTTTAGATaGTGTTGTCAGGAAAGCTTCTTGGTAGAAGTGACA | + |
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Preference number: 6 (lower is better) Translates to: DVMEEVRNRFFR*CCQESFLVEVT Trigger: TGTCACTTCTACCAAGAAGCTTTCCTGACAACACAATCTAAAGAATCTGTTTCGGACTTCCTCCATAACATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000460471.1 |
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