Pregenerated sensors for LINC01389 (Homo sapiens)
Ensembl gene IDs: ENSG00000225762Ensembl transcript IDs: ENST00000420876.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AAGGTCACCATCTTTCCTGTTGTGCAGAGAGCTGATGGACAAAGTTaGATTTCTGGCTGCCGCCATATACCTGATGTCAACTGTACCATA | + |
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Preference number: 5 (lower is better) Translates to: KVTIFPVVQRADGQS*ISGCRHIPDVNCTI Trigger: TATGGTACAGTTGACATCAGGTATATGGCGGCAGCCAGAAATTCAACTTTGTCCATCAGCTCTCTGCACAACAGGAAAGATGGTGACCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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| CDS CCA 90 bp | GTCAACTGTACCATATCTAGATTATCACTCAGGCCCACACCTTTATaGGAATGCCTTTATGGGAGTTCATCAGAGCAGAACCTGCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: VNCTISRLSLRPTPL*ECLYGSSSEQNLLL Trigger: GAGAAGCAGGTTCTGCTCTGATGAACTCCCATAAAGGCATTCCCATAAAGGTGTGGGCCTGAGTGATAATCTAGATATGGTACAGTTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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| CDS GCA 90 bp | TGTACCATATCTAGATTATCACTCAGGCCCACACCTTTATGGGAATaGCTTTATGGGAGTTCATCAGAGCAGAACCTGCTTCTCTTAGGT | + |
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Preference number: 5 (lower is better) Translates to: CTISRLSLRPTPLWE*LYGSSSEQNLLLLG Trigger: ACCTAAGAGAAGCAGGTTCTGCTCTGATGAACTCCCATAAAGGCATTCCCATAAAGGTGTGGGCCTGAGTGATAATCTAGATATGGTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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| CDS CCA 72 bp | ATCACTCAGGCCCACACCTTTATGGGAATGCCTTTATaGGAGTTCATCAGAGCAGAACCTGCTTCTCTTAGG | + |
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Preference number: 6 (lower is better) Translates to: ITQAHTFMGMPL*EFIRAEPASLR Trigger: CCTAAGAGAAGCAGGTTCTGCTCTGATGAACTCCCATAAAGGCATTCCCATAAAGGTGTGGGCCTGAGTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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| CDS TCA 72 bp | ATCTTTCCTGTTGTGCAGAGAGCTGATGGACAAAGTTaGATTTCTGGCTGCCGCCATATACCTGATGTCAAC | + |
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Preference number: 6 (lower is better) Translates to: IFPVVQRADGQS*ISGCRHIPDVN Trigger: GTTGACATCAGGTATATGGCGGCAGCCAGAAATTCAACTTTGTCCATCAGCTCTCTGCACAACAGGAAAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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| CDS CCA 72 bp | ACCATATCTAGATTATCACTCAGGCCCACACCTTTATaGGAATGCCTTTATGGGAGTTCATCAGAGCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: TISRLSLRPTPL*ECLYGSSSEQN Trigger: GTTCTGCTCTGATGAACTCCCATAAAGGCATTCCCATAAAGGTGTGGGCCTGAGTGATAATCTAGATATGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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| CDS CAA 72 bp | CTTTTCCTTCATGGCTTTGTCCTCAGCCTTGTATCTTaGTGGGCAAGGGATCAAGTCTTGGTCTTTTTGATG | + |
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Preference number: 6 (lower is better) Translates to: LFLHGFVLSLVS*WARDQVLVFLM Trigger: CATCAAAAAGACCAAGACTTGATCCCTTGCCCACAAAGATACAAGGCTGAGGACAAAGCCATGAAGGAAAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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| CDS CAA 90 bp | GGCTTTGTCCTCAGCCTTGTATCTTTGTGGGCAAGGGATCAAGTCTaGGTCTTTTTGATGCATTCGCTCATAAGTTCAACTTGGTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: GFVLSLVSLWARDQV*VFLMHSLISSTWSF Trigger: AAAAGACCAAGTTGAACTTATGAGCGAATGCATCAAAAAGACCAAGACTTGATCCCTTGCCCACAAAGATACAAGGCTGAGGACAAAGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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| CDS CAA 72 bp | CTCAGCCTTGTATCTTTGTGGGCAAGGGATCAAGTCTaGGTCTTTTTGATGCATTCGCTCATAAGTTCAACT | + |
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Preference number: 6 (lower is better) Translates to: LSLVSLWARDQV*VFLMHSLISST Trigger: AGTTGAACTTATGAGCGAATGCATCAAAAAGACCAAGACTTGATCCCTTGCCCACAAAGATACAAGGCTGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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| CDS CAA 72 bp | GTATCTTTGTGGGCAAGGGATCAAGTCTTGGTCTTTTaGATGCATTCGCTCATAAGTTCAACTTGGTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: VSLWARDQVLVF*MHSLISSTWSF Trigger: AAAAGACCAAGTTGAACTTATGAGCGAATGCATCAAAAAGACCAAGACTTGATCCCTTGCCCACAAAGATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000420876.1 |
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