Pregenerated sensors for LINC01387 (Homo sapiens)
Ensembl gene IDs: ENSG00000265944Ensembl transcript IDs: ENST00000584361.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGCTTCTGGGAGAAGACCTCGCCCGCAGGAACGCACAGGGGGCAGTaGCGGCCCAGCAGAGCAGCACGGAGCAGATCGCAGCATTTGGGA | + |
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Preference number: 5 (lower is better) Translates to: RFWEKTSPAGTHRGQ*RPSRAARSRSQHLG Trigger: TCCCAAATGCTGCGATCTGCTCCGTGCTGCTCTGCTGGGCCGTCACTGCCCCCTGTGCGTTCCTGCGGGCGAGGTCTTCTCCCAGAAGCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS TCA 90 bp | CCCCAAGGAAGGGAGGCGCTGGCACCATGTCTGTACATCAGTGTGTaGTGTCCACGATTATTACAGGATGAGAGGGCACTGCTCATCCCC | + |
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Preference number: 5 (lower is better) Translates to: PQGREALAPCLYISV*CPRLLQDERALLIP Trigger: GGGGATGAGCAGTGCCCTCTCATCCTGTAATAATCGTGGACATCACACACTGATGTACAGACATGGTGCCAGCGCCTCCCTTCCTTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS CCA 90 bp | CCATTGTGGCACCGGGTTTTCCAAGACCCCAAGGAAGGGAGGCGCTaGCACCATGTCTGTACATCAGTGTGTGATGTCCACGATTATTAC | + |
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Preference number: 5 (lower is better) Translates to: PLWHRVFQDPKEGRR*HHVCTSVCDVHDYY Trigger: GTAATAATCGTGGACATCACACACTGATGTACAGACATGGTGCCAGCGCCTCCCTTCCTTGGGGTCTTGGAAAACCCGGTGCCACAATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS TCA 90 bp | ACCATGTCTGTACATCAGTGTGTGATGTCCACGATTATTACAGGATaGGAGGGCACTGCTCATCCCCAGGACCCAGAGAGCTTTGAAATA | + |
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Preference number: 5 (lower is better) Translates to: TMSVHQCVMSTIITG*EGTAHPQDPESFEI Trigger: TATTTCAAAGCTCTCTGGGTCCTGGGGATGAGCAGTGCCCTCTCATCCTGTAATAATCGTGGACATCACACACTGATGTACAGACATGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS CCA 72 bp | CACCGGGTTTTCCAAGACCCCAAGGAAGGGAGGCGCTaGCACCATGTCTGTACATCAGTGTGTGATGTCCAC | + |
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Preference number: 6 (lower is better) Translates to: HRVFQDPKEGRR*HHVCTSVCDVH Trigger: GTGGACATCACACACTGATGTACAGACATGGTGCCAGCGCCTCCCTTCCTTGGGGTCTTGGAAAACCCGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS CAA 72 bp | ACGGAGCAGATCGCAGCATTTGGGAGGCCCTCCGTCTaGCTGGCTGGGTTGAATTCTTGGAGGAATTGCAAG | + |
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Preference number: 6 (lower is better) Translates to: TEQIAAFGRPSV*LAGLNSWRNCK Trigger: CTTGCAATTCCTCCAAGAATTCAACCCAGCCAGCAAGACGGAGGGCCTCCCAAATGCTGCGATCTGCTCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS CAA 90 bp | GCTGAGGTTAAGTTCCATTCTGTTTCCACAGCAGAGCCTCTCCATTaGCAGGATCCACACGGACATCCAGCTGCCCCGTGCCTTGACCTT | + |
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Preference number: 6 (lower is better) Translates to: AEVKFHSVSTAEPLH*QDPHGHPAAPCLDL Trigger: AAGGTCAAGGCACGGGGCAGCTGGATGTCCGTGTGGATCCTGCAAATGGAGAGGCTCTGCTGTGGAAACAGAATGGAACTTAACCTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS TCA 72 bp | GCAGGATCCACACGGACATCCAGCTGCCCCGTGCCTTaGCCTTTACTTAGCGGCAGCTTAATTCCAAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: AGSTRTSSCPVP*PLLSGSLIPRK Trigger: TTTCCTTGGAATTAAGCTGCCGCTAAGTAAAGGTCAAGGCACGGGGCAGCTGGATGTCCGTGTGGATCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS TCA 72 bp | AGGGAGGCGCTGGCACCATGTCTGTACATCAGTGTGTaGTGTCCACGATTATTACAGGATGAGAGGGCACTG | + |
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Preference number: 6 (lower is better) Translates to: REALAPCLYISV*CPRLLQDERAL Trigger: CAGTGCCCTCTCATCCTGTAATAATCGTGGACATCACACACTGATGTACAGACATGGTGCCAGCGCCTCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS CAA 90 bp | AGCTGCCAGAGCCCTGAACTTCGGTGTGAGAAACACGAATCCGTATaGATCCAAGGATACTTAGATCCCATTGTGGCACCGGGTTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SCQSPELRCEKHESV*IQGYLDPIVAPGFP Trigger: TGGAAAACCCGGTGCCACAATGGGATCTAAGTATCCTTGGATCAATACGGATTCGTGTTTCTCACACCGAAGTTCAGGGCTCTGGCAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS CAA 72 bp | AGCCCTGAACTTCGGTGTGAGAAACACGAATCCGTATaGATCCAAGGATACTTAGATCCCATTGTGGCACCG | + |
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Preference number: 6 (lower is better) Translates to: SPELRCEKHESV*IQGYLDPIVAP Trigger: CGGTGCCACAATGGGATCTAAGTATCCTTGGATCAATACGGATTCGTGTTTCTCACACCGAAGTTCAGGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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| CDS CCA 72 bp | AAGGAAACGTTCCTCTTCACCAACAGTTTGAGGGTCTaGCCAATGAATTCACTTCTGTCCTGTTCATTGTCT | + |
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Preference number: 6 (lower is better) Translates to: KETFLFTNSLRV*PMNSLLSCSLS Trigger: AGACAATGAACAGGACAGAAGTGAATTCATTGGCCAGACCCTCAAACTGTTGGTGAAGAGGAACGTTTCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584361.1 |
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