Pregenerated sensors for LINC01386 (Homo sapiens)

Ensembl gene IDs: ENSG00000251324

Ensembl transcript IDs: ENST00000506196.1

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	CTCTCACTGTTACCCTGCGCTTCCCATTCAGCGTGCTaGACAAACTGCACAGAAATGCCAGCCCAGCTTGTT	+
Preference number: 6 (lower is better) Translates to: LSLLPCASHSAC*TNCTEMPAQLV Trigger: AACAAGCTGGGCTGGCATTTCTGTGCAGTTTGTTCAGCACGCTGAATGGGAAGCGCAGGGTAACAGTGAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506196.1
CDS GCA 72 bp	GGAGCTGAAACCCCACAGGTGATAAACTTTGATTCGTaGTCTCACTGTTACCCTGCGCTTCCCATTCAGCGT	+
Preference number: 6 (lower is better) Translates to: GAETPQVINFDS*SHCYPALPIQR Trigger: ACGCTGAATGGGAAGCGCAGGGTAACAGTGAGAGCACGAATCAAAGTTTATCACCTGTGGGGTTTCAGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000506196.1
CDS GCA 72 bp	CTTCACCCAGAGGCTGGCTGTGCAGACAAATCTCTCTaGTTGGGAACGACAGGGCTCTCTAAAGTAACTCTA	+
Preference number: 6 (lower is better) Translates to: LHPEAGCADKSL*LGTTGLSKVTL Trigger: TAGAGTTACTTTAGAGAGCCCTGTCGTTCCCAAGCAGAGAGATTTGTCTGCACAGCCAGCCTCTGGGTGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506196.1
CDS GCA 72 bp	CTTCCCATTCAGCGTGCTGAACAAACTGCACAGAAATaGCAGCCCAGCTTGTTTCTGCTACTGCATTGCCTT	+
Preference number: 6 (lower is better) Translates to: LPIQRAEQTAQK*QPSLFLLLHCL Trigger: AAGGCAATGCAGTAGCAGAAACAAGCTGGGCTGGCATTTCTGTGCAGTTTGTTCAGCACGCTGAATGGGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506196.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu