Pregenerated sensors for LINC01385 (Homo sapiens)
Ensembl gene IDs: ENSG00000251604Ensembl transcript IDs: ENST00000512310.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTCCCGGGCCCCCGCAGCCGGTGGGAGGGACGCCCGGGAGCCGGCTaGCCACACTCGAGAAACACAGGCTGCTGGGCGAGTTCCCCGCGC | + |
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Preference number: 5 (lower is better) Translates to: VPGPRSRWEGRPGAG*PHSRNTGCWASSPR Trigger: GCGCGGGGAACTCGCCCAGCAGCCTGTGTTTCTCGAGTGTGGGCAGCCGGCTCCCGGGCGTCCCTCCCACCGGCTGCGGGGGCCCGGGAC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS GCA 90 bp | GAGGGACGCCCGGGAGCCGGCTGCCCACACTCGAGAAACACAGGCTaGTGGGCGAGTTCCCCGCGCGGGCCGAGCTCCCAGGGAGTTGCC | + |
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Preference number: 5 (lower is better) Translates to: EGRPGAGCPHSRNTG*WASSPRGPSSQGVA Trigger: GGCAACTCCCTGGGAGCTCGGCCCGCGCGGGGAACTCGCCCAGCAGCCTGTGTTTCTCGAGTGTGGGCAGCCGGCTCCCGGGCGTCCCTC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS CCA 90 bp | AGGACCTGCCTCCACTACCGCCCAGTCCCGGGCCCCCGCAGCCGGTaGGAGGGACGCCCGGGAGCCGGCTGCCCACACTCGAGAAACACA | + |
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Preference number: 5 (lower is better) Translates to: RTCLHYRPVPGPRSR*EGRPGAGCPHSRNT Trigger: TGTGTTTCTCGAGTGTGGGCAGCCGGCTCCCGGGCGTCCCTCCCACCGGCTGCGGGGGCCCGGGACTGGGCGGTAGTGGAGGCAGGTCCT 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS CCA 90 bp | TCACCCGTTGTTGAAATTAGCTTGGCGCATGGGAACCAGCATGAGTaGCAGGTAATGTTACACCACAGGAGAATGCTGAAGTGGAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: SPVVEISLAHGNQHE*QVMLHHRRMLKWSA Trigger: GGCACTCCACTTCAGCATTCTCCTGTGGTGTAACATTACCTGCCACTCATGCTGGTTCCCATGCGCCAAGCTAATTTCAACAACGGGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS GCA 72 bp | CCGGGAGCCGGCTGCCCACACTCGAGAAACACAGGCTaGTGGGCGAGTTCCCCGCGCGGGCCGAGCTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: PGAGCPHSRNTG*WASSPRGPSSQ Trigger: CTGGGAGCTCGGCCCGCGCGGGGAACTCGCCCAGCAGCCTGTGTTTCTCGAGTGTGGGCAGCCGGCTCCCGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS GCA 72 bp | CCCCGCAGCCGGTGGGAGGGACGCCCGGGAGCCGGCTaGCCACACTCGAGAAACACAGGCTGCTGGGCGAGT | + |
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Preference number: 6 (lower is better) Translates to: PRSRWEGRPGAG*PHSRNTGCWAS Trigger: ACTCGCCCAGCAGCCTGTGTTTCTCGAGTGTGGGCAGCCGGCTCCCGGGCGTCCCTCCCACCGGCTGCGGGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS CAA 90 bp | GAATCTGTCTCCTCAGCCATCACATGGAGATACCCACTTCACCCGTaGTTGAAATTAGCTTGGCGCATGGGAACCAGCATGAGTGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: ESVSSAITWRYPLHP*LKLAWRMGTSMSGR Trigger: CCTGCCACTCATGCTGGTTCCCATGCGCCAAGCTAATTTCAACAACGGGTGAAGTGGGTATCTCCATGTGATGGCTGAGGAGACAGATTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS TCA 72 bp | CAGGTACAAACACTATCGCAATACAGCCTTCTAGAATaGCTCTTCAAAGGAGGGTCGAGGCGCCAGGGGAAC | + |
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Preference number: 6 (lower is better) Translates to: QVQTLSQYSLLE*LFKGGSRRQGN Trigger: GTTCCCCTGGCGCCTCGACCCTCCTTTGAAGAGTCATTCTAGAAGGCTGTATTGCGATAGTGTTTGTACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS CAA 72 bp | TCCTCAGCCATCACATGGAGATACCCACTTCACCCGTaGTTGAAATTAGCTTGGCGCATGGGAACCAGCATG | + |
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Preference number: 6 (lower is better) Translates to: SSAITWRYPLHP*LKLAWRMGTSM Trigger: CATGCTGGTTCCCATGCGCCAAGCTAATTTCAACAACGGGTGAAGTGGGTATCTCCATGTGATGGCTGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS CAA 90 bp | AGCCATCACATGGAGATACCCACTTCACCCGTTGTTGAAATTAGCTaGGCGCATGGGAACCAGCATGAGTGGCAGGTAATGTTACACCAC | + |
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Preference number: 6 (lower is better) Translates to: SHHMEIPTSPVVEIS*AHGNQHEWQVMLHH Trigger: GTGGTGTAACATTACCTGCCACTCATGCTGGTTCCCATGCGCCAAGCTAATTTCAACAACGGGTGAAGTGGGTATCTCCATGTGATGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS CAA 72 bp | ATGGAGATACCCACTTCACCCGTTGTTGAAATTAGCTaGGCGCATGGGAACCAGCATGAGTGGCAGGTAATG | + |
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Preference number: 6 (lower is better) Translates to: MEIPTSPVVEIS*AHGNQHEWQVM Trigger: CATTACCTGCCACTCATGCTGGTTCCCATGCGCCAAGCTAATTTCAACAACGGGTGAAGTGGGTATCTCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS CAA 72 bp | TCAGCCATCACATGGAGATACCCACTTCACCCGTTGTaGAAATTAGCTTGGCGCATGGGAACCAGCATGAGT | + |
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Preference number: 6 (lower is better) Translates to: SAITWRYPLHPL*KLAWRMGTSMS Trigger: ACTCATGCTGGTTCCCATGCGCCAAGCTAATTTCAACAACGGGTGAAGTGGGTATCTCCATGTGATGGCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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| CDS TCA 72 bp | CTCGCGTTTTCTTCTGTCTCTTTTCAGGGCTCACAGTaGCAGGTACAAACACTATCGCAATACAGCCTTCTA | + |
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Preference number: 6 (lower is better) Translates to: LAFSSVSFQGSQ*QVQTLSQYSLL Trigger: TAGAAGGCTGTATTGCGATAGTGTTTGTACCTGTCACTGTGAGCCCTGAAAAGAGACAGAAGAAAACGCGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000512310.1 |
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