Pregenerated sensors for LINC01381 (Homo sapiens)
Ensembl gene IDs: ENSG00000230452Ensembl transcript IDs: ENST00000431650.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGGTGGCGAGGCCGCTGCGTCCCTCGGAGCCCGGTGGGGAGGCCCTaGGTGCCGCGCCCCAAGGCTCGCGGGCGATTGCCGCCCGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: RWRGRCVPRSPVGRP*VPRPKARGRLPPVR Trigger: CCTCACGGGCGGCAATCGCCCGCGAGCCTTGGGGCGCGGCACCCAGGGCCTCCCCACCGGGCTCCGAGGGACGCAGCGGCCTCGCCACCG 80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CCA 90 bp | GGGCGATTGCCGCCCGTGAGGCGCCGCCGGGGAAGTCCGGAGCCCTaGCGTCCCCAAAGCCGTCCGCGGCTCTGCGTCCCAGTCCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: GRLPPVRRRRGSPEP*RPQSRPRLCVPVPG Trigger: GCCCGGGACTGGGACGCAGAGCCGCGGACGGCTTTGGGGACGCCAGGGCTCCGGACTTCCCCGGCGGCGCCTCACGGGCGGCAATCGCCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS GCA 90 bp | AGCGGTGAACACTTCAGAGCTGGCATCCCAGGCTCTCTCCTCAGCTaGCTGTTCAAATCTGTGCTGGGTTGGTGGGCTGCCTTGTGTTCT | + |
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Preference number: 5 (lower is better) Translates to: SGEHFRAGIPGSLLS*LFKSVLGWWAALCS Trigger: AGAACACAAGGCAGCCCACCAACCCAGCACAGATTTGAACAGGCAGCTGAGGAGAGAGCCTGGGATGCCAGCTCTGAAGTGTTCACCGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CCA 90 bp | CCAGGCTCTCTCCTCAGCTGCCTGTTCAAATCTGTGCTGGGTTGGTaGGCTGCCTTGTGTTCTAGCTTGGCTGATAATATCCTGCAGGCG | + |
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Preference number: 5 (lower is better) Translates to: PGSLLSCLFKSVLGW*AALCSSLADNILQA Trigger: CGCCTGCAGGATATTATCAGCCAAGCTAGAACACAAGGCAGCCCACCAACCCAGCACAGATTTGAACAGGCAGCTGAGGAGAGAGCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS TCA 72 bp | TGCCGCGCCCCAAGGCTCGCGGGCGATTGCCGCCCGTaGGGCGCCGCCGGGGAAGTCCGGAGCCCTGGCGTC | + |
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Preference number: 6 (lower is better) Translates to: CRAPRLAGDCRP*GAAGEVRSPGV Trigger: GACGCCAGGGCTCCGGACTTCCCCGGCGGCGCCTCACGGGCGGCAATCGCCCGCGAGCCTTGGGGCGCGGCA 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CAA 72 bp | AGGCCCTGGGTGCCGCGCCCCAAGGCTCGCGGGCGATaGCCGCCCGTGAGGCGCCGCCGGGGAAGTCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: RPWVPRPKARGR*PPVRRRRGSPE Trigger: CTCCGGACTTCCCCGGCGGCGCCTCACGGGCGGCAATCGCCCGCGAGCCTTGGGGCGCGGCACCCAGGGCCT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CCA 72 bp | CCGCCCGTGAGGCGCCGCCGGGGAAGTCCGGAGCCCTaGCGTCCCCAAAGCCGTCCGCGGCTCTGCGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: PPVRRRRGSPEP*RPQSRPRLCVP Trigger: TGGGACGCAGAGCCGCGGACGGCTTTGGGGACGCCAGGGCTCCGGACTTCCCCGGCGGCGCCTCACGGGCGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CCA 72 bp | CCATTTCTAGAAGGCACCGGATTCGGCCTAATGCGGTaGCGAGGCCGCTGCGTCCCTCGGAGCCCGGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: PFLEGTGFGLMR*RGRCVPRSPVG Trigger: CCCCACCGGGCTCCGAGGGACGCAGCGGCCTCGCCACCGCATTAGGCCGAATCCGGTGCCTTCTAGAAATGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS GCA 72 bp | AGCTTGGCTGATAATATCCTGCAGGCGCTCTGGAGCTaGAGGAGGCCATTTCTAGAAGGCACCGGATTCGGC | + |
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Preference number: 6 (lower is better) Translates to: SLADNILQALWS*RRPFLEGTGFG Trigger: GCCGAATCCGGTGCCTTCTAGAAATGGCCTCCTGCAGCTCCAGAGCGCCTGCAGGATATTATCAGCCAAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CCA 72 bp | CTGTGCTGGGTTGGTGGGCTGCCTTGTGTTCTAGCTTaGCTGATAATATCCTGCAGGCGCTCTGGAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: LCWVGGLPCVLA*LIISCRRSGAA Trigger: TGCAGCTCCAGAGCGCCTGCAGGATATTATCAGCCAAGCTAGAACACAAGGCAGCCCACCAACCCAGCACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CAA 72 bp | TCTGTGCTGGGTTGGTGGGCTGCCTTGTGTTCTAGCTaGGCTGATAATATCCTGCAGGCGCTCTGGAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SVLGWWAALCSS*ADNILQALWSC Trigger: GCAGCTCCAGAGCGCCTGCAGGATATTATCAGCCAAGCTAGAACACAAGGCAGCCCACCAACCCAGCACAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CAA 90 bp | CTCCTCAGCTGCCTGTTCAAATCTGTGCTGGGTTGGTGGGCTGCCTaGTGTTCTAGCTTGGCTGATAATATCCTGCAGGCGCTCTGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: LLSCLFKSVLGWWAA*CSSLADNILQALWS Trigger: GCTCCAGAGCGCCTGCAGGATATTATCAGCCAAGCTAGAACACAAGGCAGCCCACCAACCCAGCACAGATTTGAACAGGCAGCTGAGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CAA 72 bp | TGCCTGTTCAAATCTGTGCTGGGTTGGTGGGCTGCCTaGTGTTCTAGCTTGGCTGATAATATCCTGCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: CLFKSVLGWWAA*CSSLADNILQA Trigger: CGCCTGCAGGATATTATCAGCCAAGCTAGAACACAAGGCAGCCCACCAACCCAGCACAGATTTGAACAGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CCA 72 bp | CTCCTCAGCTGCCTGTTCAAATCTGTGCTGGGTTGGTaGGCTGCCTTGTGTTCTAGCTTGGCTGATAATATC | + |
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Preference number: 6 (lower is better) Translates to: LLSCLFKSVLGW*AALCSSLADNI Trigger: GATATTATCAGCCAAGCTAGAACACAAGGCAGCCCACCAACCCAGCACAGATTTGAACAGGCAGCTGAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS CCA 72 bp | TCTCTCCTCAGCTGCCTGTTCAAATCTGTGCTGGGTTaGTGGGCTGCCTTGTGTTCTAGCTTGGCTGATAAT | + |
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Preference number: 6 (lower is better) Translates to: SLLSCLFKSVLG*WAALCSSLADN Trigger: ATTATCAGCCAAGCTAGAACACAAGGCAGCCCACCAACCCAGCACAGATTTGAACAGGCAGCTGAGGAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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| CDS TCA 72 bp | CCTGACCATCTACTGACAAGGGATGGCTTCTTTCTTTaGCAAGGGAACACTTCTAGCGGTGAACACTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: PDHLLTRDGFFL*QGNTSSGEHFR Trigger: TCTGAAGTGTTCACCGCTAGAAGTGTTCCCTTGTCAAAGAAAGAAGCCATCCCTTGTCAGTAGATGGTCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431650.1 |
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