Pregenerated sensors for LINC01378 (Homo sapiens)
Ensembl gene IDs: ENSG00000236922Ensembl transcript IDs: ENST00000422145.7, ENST00000437514.2, ENST00000600624.6, ENST00000626258.2, ENST00000660654.1, ENST00000662705.1, ENST00000665215.1, ENST00000665403.1, ENST00000665422.1, ENST00000667115.1, ENST00000667741.1, ENST00000668162.1, ENST00000671002.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTTCCTGTGGACTGCTCTGAGGCAATGACTGATGATGGTGGGGGTTaGAAGGCTGGTCCACTCCATAGTGCAGAATCTGTGGGATCCCTG | + |
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Preference number: 5 (lower is better) Translates to: FPVDCSEAMTDDGGG*KAGPLHSAESVGSL Trigger: CAGGGATCCCACAGATTCTGCACTATGGAGTGGACCAGCCTTTCAACCCCCACCATCATCAGTCATTGCCTCAGAGCAGTCCACAGGAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000437514.2 ENST00000662705.1 |
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| CDS TCA 90 bp | TTATTTGGGTCAAGGTTATGTTTCCTGTGGACTGCTCTGAGGCAATaGCTGATGATGGTGGGGGTTGAAAGGCTGGTCCACTCCATAGTG | + |
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Preference number: 5 (lower is better) Translates to: LFGSRLCFLWTALRQ*LMMVGVERLVHSIV Trigger: CACTATGGAGTGGACCAGCCTTTCAACCCCCACCATCATCAGTCATTGCCTCAGAGCAGTCCACAGGAAACATAACCTTGACCCAAATAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000437514.2 ENST00000662705.1 |
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| CDS CCA 90 bp | TTCACCTCCATGTGTTCTTACATAGAGTGGACTCCTCACATGGCTTaGAGAGAAACGTGTAGCAGAGCAAGGGCACTAGGCTATATTAAA | + |
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Preference number: 5 (lower is better) Translates to: FTSMCSYIEWTPHMA*RETCSRARALGYIK Trigger: TTTAATATAGCCTAGTGCCCTTGCTCTGCTACACGTTTCTCTCCAAGCCATGTGAGGAGTCCACTCTATGTAAGAACACATGGAGGTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000422145.7 ENST00000665215.1 ENST00000665403.1 |
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| CDS CCA 90 bp | CAGCTGAATCTTAGAATGCTGATGATTGTGGTAGATTCAGTAGACTaGCCTATTCAAAATATGGTACAAGATCCTGCTGGTGTATCTTCC | + |
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Preference number: 5 (lower is better) Translates to: QLNLRMLMIVVDSVD*PIQNMVQDPAGVSS Trigger: GGAAGATACACCAGCAGGATCTTGTACCATATTTTGAATAGGCCAGTCTACTGAATCTACCACAATCATCAGCATTCTAAGATTCAGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000600624.6 ENST00000671002.1 |
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| CDS CCA 90 bp | AAGTCTTTCTCAGGTCCAGTCACTTTCATCACTGATGTTTGGGTATaGAGCTTGTGGCATCATTGTTGTGTGAATCAAGTATATTTGAAT | + |
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Preference number: 5 (lower is better) Translates to: KSFSGPVTFITDVWV*SLWHHCCVNQVYLN Trigger: ATTCAAATATACTTGATTCACACAACAATGATGCCACAAGCTCCATACCCAAACATCAGTGATGAAAGTGACTGGACCTGAGAAAGACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667115.1 |
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| CDS TCA 90 bp | TCAGGGTATGCACTGGATAAAAAGCTGGAGGCACTAAATATGCATTaGAAAGATAGTAGAACTAATGGATTTAAGTCCCGTTCAGTTTTG | + |
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Preference number: 5 (lower is better) Translates to: SGYALDKKLEALNMH*KDSRTNGFKSRSVL Trigger: CAAAACTGAACGGGACTTAAATCCATTAGTTCTACTATCTTTTCAATGCATATTTAGTGCCTCCAGCTTTTTATCCAGTGCATACCCTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000660654.1 ENST00000667741.1 ENST00000668162.1 |
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| CDS GCA 90 bp | TTTAAAATGTTGTTGCTGTCATTTGTAATGATCAGCTCCCTACTGTaGCTGGGTACACAACAACAATATTTGGGCTTTAGGAAGATGATT | + |
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Preference number: 5 (lower is better) Translates to: FKMLLLSFVMISSLL*LGTQQQYLGFRKMI Trigger: AATCATCTTCCTAAAGCCCAAATATTGTTGTTGTGTACCCAGGCACAGTAGGGAGCTGATCATTACAAATGACAGCAACAACATTTTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000422145.7 ENST00000600624.6 ENST00000660654.1 ENST00000665215.1 ENST00000665403.1 ENST00000667741.1 ENST00000668162.1 ENST00000671002.1 |
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| CDS TCA 72 bp | TCCTTCCCAGATCTTCTCGGCTTAGCAGCTGAAGACTaGCACTGCCCGATCGCCTCAGAAGCGGTCTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: SFPDLLGLAAED*HCPIASEAVCL Trigger: AAGACAGACCGCTTCTGAGGCGATCGGGCAGTGTCAGTCTTCAGCTGCTAAGCCGAGAAGATCTGGGAAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626258.2 |
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| CDS TCA 72 bp | TCAAGGTTATGTTTCCTGTGGACTGCTCTGAGGCAATaGCTGATGATGGTGGGGGTTGAAAGGCTGGTCCAC | + |
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Preference number: 6 (lower is better) Translates to: SRLCFLWTALRQ*LMMVGVERLVH Trigger: GTGGACCAGCCTTTCAACCCCCACCATCATCAGTCATTGCCTCAGAGCAGTCCACAGGAAACATAACCTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000437514.2 ENST00000662705.1 |
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| CDS TCA 72 bp | CTGGTCCACTCCATAGTGCAGAATCTGTGGGATCCCTaGGCTTGCTTTCCTGCAACTAGATGGTCTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: LVHSIVQNLWDP*ACFPATRWSHL Trigger: AAGATGAGACCATCTAGTTGCAGGAAAGCAAGCTCAGGGATCCCACAGATTCTGCACTATGGAGTGGACCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000437514.2 ENST00000662705.1 |
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| CDS CCA 72 bp | ATGTGTTCTTACATAGAGTGGACTCCTCACATGGCTTaGAGAGAAACGTGTAGCAGAGCAAGGGCACTAGGC | + |
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Preference number: 6 (lower is better) Translates to: MCSYIEWTPHMA*RETCSRARALG Trigger: GCCTAGTGCCCTTGCTCTGCTACACGTTTCTCTCCAAGCCATGTGAGGAGTCCACTCTATGTAAGAACACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000422145.7 ENST00000665215.1 ENST00000665403.1 |
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| CDS TCA 72 bp | AGCAAACTGGAGCTGACGGTTCTGATAGTAACCTTCTaGTCTTGTCAGCACAGCTTGCCTATTCTGGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: SKLELTVLIVTF*SCQHSLPILGA Trigger: AGCTCCCAGAATAGGCAAGCTGTGCTGACAAGATCAGAAGGTTACTATCAGAACCGTCAGCTCCAGTTTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671002.1 |
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| CDS GCA 72 bp | TCAGCTGATGGATGCTCTCCCCTAGTAATGAAGATGTaGTCTGTGGATAGATGTTCAATGCACAGAAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: SADGCSPLVMKM*SVDRCSMHRKE Trigger: CTCCTTTCTGTGCATTGAACATCTATCCACAGAGCACATCTTCATTACTAGGGGAGAGCATCCATCAGCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000422145.7 ENST00000600624.6 ENST00000660654.1 ENST00000665215.1 ENST00000665403.1 ENST00000667741.1 ENST00000668162.1 ENST00000671002.1 |
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| CDS TCA 72 bp | CTGCAAACAGCTGAATCATCTCTCCAACAGGAGTTCTaGACTGGGCTGAGAAGTATTAGTAGCAGAATAGAC | + |
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Preference number: 6 (lower is better) Translates to: LQTAESSLQQEF*TGLRSISSRID Trigger: GTCTATTCTGCTACTAATACTTCTCAGCCCAGTTCAGAACTCCTGTTGGAGAGATGATTCAGCTGTTTGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000422145.7 ENST00000665422.1 |
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| CDS CAA 72 bp | CACCTATCTACTGCCTTGATCCAGGTGATCAAGCTTTaGTTCTTAACATGTTGCTTAGCTTCTCAGCACCAC | + |
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Preference number: 6 (lower is better) Translates to: HLSTALIQVIKL*FLTCCLASQHH Trigger: GTGGTGCTGAGAAGCTAAGCAACATGTTAAGAACAAAAGCTTGATCACCTGGATCAAGGCAGTAGATAGGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626258.2 |
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| CDS CCA 72 bp | TCTTCCACATTTCTCTCTTCCTTCACAATCCTTATTTaGGTCAAGGTTATGTTTCCTGTGGACTGCTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SSTFLSSFTILI*VKVMFPVDCSE Trigger: CTCAGAGCAGTCCACAGGAAACATAACCTTGACCCAAATAAGGATTGTGAAGGAAGAGAGAAATGTGGAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000437514.2 ENST00000662705.1 |
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| CDS CCA 72 bp | TCAGGTCCAGTCACTTTCATCACTGATGTTTGGGTATaGAGCTTGTGGCATCATTGTTGTGTGAATCAAGTA | + |
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Preference number: 6 (lower is better) Translates to: SGPVTFITDVWV*SLWHHCCVNQV Trigger: TACTTGATTCACACAACAATGATGCCACAAGCTCCATACCCAAACATCAGTGATGAAAGTGACTGGACCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667115.1 |
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| CDS CCA 72 bp | TCTTTCTCAGGTCCAGTCACTTTCATCACTGATGTTTaGGTATGGAGCTTGTGGCATCATTGTTGTGTGAAT | + |
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Preference number: 6 (lower is better) Translates to: SFSGPVTFITDV*VWSLWHHCCVN Trigger: ATTCACACAACAATGATGCCACAAGCTCCATACCCAAACATCAGTGATGAAAGTGACTGGACCTGAGAAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667115.1 |
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| CDS CAA 90 bp | CATTTATCTCACCTATCTACTGCCTTGATCCAGGTGATCAAGCTTTaGTTCTTAACATGTTGCTTAGCTTCTCAGCACCACGTTGACACT | + |
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Preference number: 6 (lower is better) Translates to: HLSHLSTALIQVIKL*FLTCCLASQHHVDT Trigger: AGTGTCAACGTGGTGCTGAGAAGCTAAGCAACATGTTAAGAACAAAAGCTTGATCACCTGGATCAAGGCAGTAGATAGGTGAGATAAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626258.2 |
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| CDS GCA 72 bp | TTGATCCAGGTGATCAAGCTTTTGTTCTTAACATGTTaGTTAGCTTCTCAGCACCACGTTGACACTGATTTT | + |
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Preference number: 6 (lower is better) Translates to: LIQVIKLLFLTC*LASQHHVDTDF Trigger: AAAATCAGTGTCAACGTGGTGCTGAGAAGCTAAGCAACATGTTAAGAACAAAAGCTTGATCACCTGGATCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626258.2 |
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| CDS TCA 72 bp | GCACTGGATAAAAAGCTGGAGGCACTAAATATGCATTaGAAAGATAGTAGAACTAATGGATTTAAGTCCCGT | + |
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Preference number: 6 (lower is better) Translates to: ALDKKLEALNMH*KDSRTNGFKSR Trigger: ACGGGACTTAAATCCATTAGTTCTACTATCTTTTCAATGCATATTTAGTGCCTCCAGCTTTTTATCCAGTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000660654.1 ENST00000667741.1 ENST00000668162.1 |
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| CDS CCA 72 bp | GTCACTTTCATCACTGATGTTTGGGTATGGAGCTTGTaGCATCATTGTTGTGTGAATCAAGTATATTTGAAT | + |
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Preference number: 6 (lower is better) Translates to: VTFITDVWVWSL*HHCCVNQVYLN Trigger: ATTCAAATATACTTGATTCACACAACAATGATGCCACAAGCTCCATACCCAAACATCAGTGATGAAAGTGAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667115.1 |
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| CDS CAA 72 bp | GATAGTAGAACTAATGGATTTAAGTCCCGTTCAGTTTaGATAATTTTCAGTCAGGGTACTAGATGGAGTGAC | + |
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Preference number: 6 (lower is better) Translates to: DSRTNGFKSRSV*IIFSQGTRWSD Trigger: GTCACTCCATCTAGTACCCTGACTGAAAATTATCAAAACTGAACGGGACTTAAATCCATTAGTTCTACTATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000660654.1 ENST00000667741.1 ENST00000668162.1 |
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| CDS TCA 72 bp | TCTTTCAAGAAGGTAAGCAGAAACATGTACATAAGCTaGAACAATAGCCAAAAATGCAGACATATTGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: SFKKVSRNMYIS*NNSQKCRHIVP Trigger: GGGAACAATATGTCTGCATTTTTGGCTATTGTTTCAGCTTATGTACATGTTTCTGCTTACCTTCTTGAAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000422145.7 ENST00000665403.1 |
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