Pregenerated sensors for LINC01377 (Homo sapiens)

Ensembl gene IDs: ENSG00000249808

Ensembl transcript IDs: ENST00000505396.2, ENST00000652864.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TTGAGATGCATGTTAATGCGCAGTGAGGTTAAGAATGCAGACGCATaGAATGGGGTGTCCTGGGGCTTGCATTCAGAGCCCGACGTGCCA	+
Preference number: 5 (lower is better) Translates to: LRCMLMRSEVKNADA*NGVSWGLHSEPDVP Trigger: TGGCACGTCGGGCTCTGAATGCAAGCCCCAGGACACCCCATTTCATGCGTCTGCATTCTTAACCTCACTGCGCATTAACATGCATCTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000505396.2 ENST00000652864.1
CDS TCA 90 bp	AGGTCACTTCTGGTAACTGCAAACATTTTACCGGTGAATTTGAAATaGTGTGTCTCAGGCAGACATCTGACTGAGAATGGTGTTGTTGGG	+
Preference number: 5 (lower is better) Translates to: RSLLVTANILPVNLK*CVSGRHLTENGVVG Trigger: CCCAACAACACCATTCTCAGTCAGATGTCTGCCTGAGACACATCATTTCAAATTCACCGGTAAAATGTTTGCAGTTACCAGAAGTGACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652864.1
CDS CAA 72 bp	AGGGGCTGGGGGCCTCTGAACGGTGCCCACCCAGTCTaGAGGTTCGGGCAGGCCTGGATATTGAGTAGGATG	+
Preference number: 6 (lower is better) Translates to: RGWGPLNGAHPV*RFGQAWILSRM Trigger: CATCCTACTCAATATCCAGGCCTGCCCGAACCTCAAGACTGGGTGGGCACCGTTCAGAGGCCCCCAGCCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000505396.2 ENST00000652864.1
CDS TCA 72 bp	ATGTTAATGCGCAGTGAGGTTAAGAATGCAGACGCATaGAATGGGGTGTCCTGGGGCTTGCATTCAGAGCCC	+
Preference number: 6 (lower is better) Translates to: MLMRSEVKNADA*NGVSWGLHSEP Trigger: GGGCTCTGAATGCAAGCCCCAGGACACCCCATTTCATGCGTCTGCATTCTTAACCTCACTGCGCATTAACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000505396.2 ENST00000652864.1
CDS CAA 72 bp	GATGTGATCAGAAGCAGAGTCCATCCCGAAGATTCCTaGGGTCAATATGCGTGTTGGCGGGGTCCTTTCCTT	+
Preference number: 6 (lower is better) Translates to: DVIRSRVHPEDS*GQYACWRGPFL Trigger: AAGGAAAGGACCCCGCCAACACGCATATTGACCCAAGGAATCTTCGGGATGGACTCTGCTTCTGATCACATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652864.1
CDS CAA 90 bp	GCAGGTGAAGATGTGATCAGAAGCAGAGTCCATCCCGAAGATTCCTaGGGTCAATATGCGTGTTGGCGGGGTCCTTTCCTTAAACTACTT	+
Preference number: 6 (lower is better) Translates to: AGEDVIRSRVHPEDS*GQYACWRGPFLKLL Trigger: AAGTAGTTTAAGGAAAGGACCCCGCCAACACGCATATTGACCCAAGGAATCTTCGGGATGGACTCTGCTTCTGATCACATCTTCACCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652864.1
CDS GCA 72 bp	AAGCAGAGTCCATCCCGAAGATTCCTTGGGTCAATATaGGTGTTGGCGGGGTCCTTTTTAAATAACAATTTT	+
Preference number: 6 (lower is better) Translates to: KQSPSRRFLGSI*VLAGSFLNNNF Trigger: AAAATTGTTATTTAAAAAGGACCCCGCCAACACGCATATTGACCCAAGGAATCTTCGGGATGGACTCTGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000505396.2
CDS CAA 72 bp	GTTGGACATTCTTTAGAAACATCATTGTGTTTCCGATaGTCGCCCTCATTTTTGTGCATTGAGCTGGCTTAT	+
Preference number: 6 (lower is better) Translates to: VGHSLETSLCFR*SPSFLCIELAY Trigger: ATAAGCCAGCTCAATGCACAAAAATGAGGGCGACAATCGGAAACACAATGATGTTTCTAAAGAATGTCCAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000505396.2 ENST00000652864.1

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