Pregenerated sensors for LINC01376 (Homo sapiens)
Ensembl gene IDs: ENSG00000236204Ensembl transcript IDs: ENST00000418165.5, ENST00000424895.1, ENST00000432142.5, ENST00000449124.1, ENST00000650025.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTaGGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGCATTGC | + |
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Preference number: 5 (lower is better) Translates to: RVHLTRECQTVGAGQ*VRAPCASRSRARHC Trigger: GCAATGCCTCGCCCTGCTTCGGCTCGCGCACGGTGCGCGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418165.5 ENST00000432142.5 |
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| CDS GCA 90 bp | GCCCATGATTCTGTAGCCTTCTCACTGGTAGAGACTCCGGGAAGTTaGCTTCTCCGCATCTGGAGCAAAAAGAAGTCCAAAGAAGATTCT | + |
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Preference number: 5 (lower is better) Translates to: AHDSVAFSLVETPGS*LLRIWSKKKSKEDS Trigger: AGAATCTTCTTTGGACTTCTTTTTGCTCCAGATGCGGAGAAGGCAACTTCCCGGAGTCTCTACCAGTGAGAAGGCTACAGAATCATGGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000418165.5 ENST00000432142.5 ENST00000449124.1 ENST00000650025.1 |
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| CDS TCA 90 bp | GCGTATGACTGTAAGGTTGGAGAAAGTGCACTGCTGGCCAAACCTTaGCAATCCAGGTGTTGTTCTTTGAGGTTCTTTGTTCCCTGGATC | + |
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Preference number: 5 (lower is better) Translates to: AYDCKVGESALLAKP*QSRCCSLRFFVPWI Trigger: GATCCAGGGAACAAAGAACCTCAAAGAACAACACCTGGATTGTCAAGGTTTGGCCAGCAGTGCACTTTCTCCAACCTTACAGTCATACGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS CCA 90 bp | GCCTTCTCACTGGTAGAGACTCCGGGAAGTTGCCTTCTCCGCATCTaGAGCAAAAAGAAGTCCAAAGAAGATTCTCTTCCTTCATTACCT | + |
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Preference number: 5 (lower is better) Translates to: AFSLVETPGSCLLRI*SKKKSKEDSLPSLP Trigger: AGGTAATGAAGGAAGAGAATCTTCTTTGGACTTCTTTTTGCTCCAGATGCGGAGAAGGCAACTTCCCGGAGTCTCTACCAGTGAGAAGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000418165.5 ENST00000432142.5 ENST00000449124.1 ENST00000650025.1 |
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| CDS TCA 90 bp | AGGTGTTGTTCTTTGAGGTTCTTTGTTCCCTGGATCTTCATATCCTaGCACCAGGAAAACTGTGCTCTCATATACTTATCCGCTGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: RCCSLRFFVPWIFIS*HQENCALIYLSAEA Trigger: GGCCTCAGCGGATAAGTATATGAGAGCACAGTTTTCCTGGTGTCAGGATATGAAGATCCAGGGAACAAAGAACCTCAAAGAACAACACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS GCA 72 bp | CTAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTGGGTaGGCGCACCGTGCGCGAGCCGAAGCAGGGCGAGGC | + |
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Preference number: 6 (lower is better) Translates to: LGSARQWAQVSG*AHRARAEAGRG Trigger: GCCTCGCCCTGCTTCGGCTCGCGCACGGTGCGCGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418165.5 ENST00000432142.5 |
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| CDS CCA 72 bp | CTCACTAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTaGGTGCGCGCACCGTGCGCGAGCCGAAGCAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: LTRECQTVGAGQ*VRAPCASRSRA Trigger: CGCCCTGCTTCGGCTCGCGCACGGTGCGCGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418165.5 ENST00000432142.5 |
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| CDS CCA 72 bp | ACGCCGTCAGCTTCCGGACTCCGGCACCAGCAGCACTaGCCTGCGAGTTCCTTTTGCGCCTGCGCGTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: TPSASGLRHQQH*PASSFCACAWR Trigger: GCGCCACGCGCAGGCGCAAAAGGAACTCGCAGGCCAGTGCTGCTGGTGCCGGAGTCCGGAAGCTGACGGCGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650025.1 |
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| CDS GCA 72 bp | GTCAGCTTCCGGACTCCGGCACCAGCAGCACTGGCCTaGGAGTTCCTTTTGCGCCTGCGCGTGGCGCTTGCG | + |
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Preference number: 6 (lower is better) Translates to: VSFRTPAPAALA*EFLLRLRVALA Trigger: CGCAAGCGCCACGCGCAGGCGCAAAAGGAACTCGCAGGCCAGTGCTGCTGGTGCCGGAGTCCGGAAGCTGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650025.1 |
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| CDS CAA 72 bp | TCCCAGCACCTCGGGAGGCAGTACTGGAAGGATTGTTaGAGCCACTGTAGTTTGAGACCAGCCTGGGCAACA | + |
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Preference number: 6 (lower is better) Translates to: SQHLGRQYWKDC*SHCSLRPAWAT Trigger: TGTTGCCCAGGCTGGTCTCAAACTACAGTGGCTCAAACAATCCTTCCAGTACTGCCTCCCGAGGTGCTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449124.1 |
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| CDS TCA 72 bp | GCAACGCAGAAGACGGGTGATTTCTGCATTTCCATCTaGGGTACCGGGTTCATCTCACTAGGGAGTGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: ATQKTGDFCISI*GTGFISLGSAR Trigger: TCTGGCACTCCCTAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418165.5 ENST00000432142.5 |
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| CDS CAA 90 bp | TGGCAGGCTGGACAGGAGAACCACAACTTGCGTATGACTGTAAGGTaGGAGAAAGTGCACTGCTGGCCAAACCTTGACAATCCAGGTGTT | + |
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Preference number: 6 (lower is better) Translates to: WQAGQENHNLRMTVR*EKVHCWPNLDNPGV Trigger: AACACCTGGATTGTCAAGGTTTGGCCAGCAGTGCACTTTCTCCAACCTTACAGTCATACGCAAGTTGTGGTTCTCCTGTCCAGCCTGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS CAA 72 bp | TTCTGTAGCCTTCTCACTGGTAGAGACTCCGGGAAGTaGCCTTCTCCGCATCTGGAGCAAAAAGAAGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: FCSLLTGRDSGK*PSPHLEQKEVQ Trigger: TTGGACTTCTTTTTGCTCCAGATGCGGAGAAGGCAACTTCCCGGAGTCTCTACCAGTGAGAAGGCTACAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000418165.5 ENST00000432142.5 ENST00000449124.1 ENST00000650025.1 |
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| CDS CAA 72 bp | GGACAGGAGAACCACAACTTGCGTATGACTGTAAGGTaGGAGAAAGTGCACTGCTGGCCAAACCTTGACAAT | + |
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Preference number: 6 (lower is better) Translates to: GQENHNLRMTVR*EKVHCWPNLDN Trigger: ATTGTCAAGGTTTGGCCAGCAGTGCACTTTCTCCAACCTTACAGTCATACGCAAGTTGTGGTTCTCCTGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS CAA 90 bp | GGTTGGAGAAAGTGCACTGCTGGCCAAACCTTGACAATCCAGGTGTaGTTCTTTGAGGTTCTTTGTTCCCTGGATCTTCATATCCTGACA | + |
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Preference number: 6 (lower is better) Translates to: GWRKCTAGQTLTIQV*FFEVLCSLDLHILT Trigger: TGTCAGGATATGAAGATCCAGGGAACAAAGAACCTCAAAGAACAACACCTGGATTGTCAAGGTTTGGCCAGCAGTGCACTTTCTCCAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS CAA 72 bp | AAGTCTGTAGCTTCTCCAGGCGTTGAATCATCTGGCTaGGGGCCAGACACTAGAGGGTGCTTTAGAAATATT | + |
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Preference number: 6 (lower is better) Translates to: KSVASPGVESSG*GPDTRGCFRNI Trigger: AATATTTCTAAAGCACCCTCTAGTGTCTGGCCCCAAGCCAGATGATTCAACGCCTGGAGAAGCTACAGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS GCA 72 bp | AACTTGCGTATGACTGTAAGGTTGGAGAAAGTGCACTaGTGGCCAAACCTTGACAATCCAGGTGTTGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: NLRMTVRLEKVH*WPNLDNPGVVL Trigger: AAGAACAACACCTGGATTGTCAAGGTTTGGCCAGCAGTGCACTTTCTCCAACCTTACAGTCATACGCAAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS CCA 72 bp | AAACTACACGCTAGTATCAGTCGCAGCATAATCAGATaGCTGATGGGTCTAACATTCCTACTAGACAACCCC | + |
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Preference number: 6 (lower is better) Translates to: KLHASISRSIIR*LMGLTFLLDNP Trigger: GGGGTTGTCTAGTAGGAATGTTAGACCCATCAGCCATCTGATTATGCTGCGACTGATACTAGCGTGTAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS CAA 72 bp | AAGTGCACTGCTGGCCAAACCTTGACAATCCAGGTGTaGTTCTTTGAGGTTCTTTGTTCCCTGGATCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: KCTAGQTLTIQV*FFEVLCSLDLH Trigger: ATGAAGATCCAGGGAACAAAGAACCTCAAAGAACAACACCTGGATTGTCAAGGTTTGGCCAGCAGTGCACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS TCA 72 bp | TGTAAGGTTGGAGAAAGTGCACTGCTGGCCAAACCTTaGCAATCCAGGTGTTGTTCTTTGAGGTTCTTTGTT | + |
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Preference number: 6 (lower is better) Translates to: CKVGESALLAKP*QSRCCSLRFFV Trigger: AACAAAGAACCTCAAAGAACAACACCTGGATTGTCAAGGTTTGGCCAGCAGTGCACTTTCTCCAACCTTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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| CDS CAA 72 bp | CTTGATCAAGCCCAGTCCTTCCATGGTCAAAAGTCATaGTCTATGCGACTTCTTAAAATGATTCAGTACTCT | + |
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Preference number: 6 (lower is better) Translates to: LDQAQSFHGQKS*SMRLLKMIQYS Trigger: AGAGTACTGAATCATTTTAAGAAGTCGCATAGACAATGACTTTTGACCATGGAAGGACTGGGCTTGATCAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000424895.1 ENST00000650025.1 |
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