Pregenerated sensors for LINC01375 (Homo sapiens)
Ensembl gene IDs: ENSG00000226159Ensembl transcript IDs: ENST00000428485.1, ENST00000665903.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTTTCAGTGGATGGTGCGGGAGGAACCCTGACCTGCCCTACAGTGTaGAGAAATGTGGGTTGGGGATGCCCTTCACTGTGGGAAGTAGCT | + |
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Preference number: 5 (lower is better) Translates to: FSVDGAGGTLTCPTV*RNVGWGCPSLWEVA Trigger: AGCTACTTCCCACAGTGAAGGGCATCCCCAACCCACATTTCTCCACACTGTAGGGCAGGTCAGGGTTCCTCCCGCACCATCCACTGAAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS GCA 90 bp | GGGCTGCTTAAGAGTTCCAAAAGTGCTTCCACATGCAATATCCTATaGCAGTGCCCCATCAGGACATTACCTTTGCCTGTTCCTGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: GLLKSSKSASTCNIL*QCPIRTLPLPVPGA Trigger: TGCTCCAGGAACAGGCAAAGGTAATGTCCTGATGGGGCACTGGCATAGGATATTGCATGTGGAAGCACTTTTGGAACTCTTAAGCAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS GCA 90 bp | GAACCTTATGCTAGGCCCACTGGGCTCTCTGACATTGACACACAGTaGTTTTCTGAGACAGCCAAGACTGACTTTGTGTTTGTCAAGGAC | + |
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Preference number: 5 (lower is better) Translates to: EPYARPTGLSDIDTQ*FSETAKTDFVFVKD Trigger: GTCCTTGACAAACACAAAGTCAGTCTTGGCTGTCTCAGAAAAGCACTGTGTGTCAATGTCAGAGAGCCCAGTGGGCCTAGCATAAGGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665903.1 |
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| CDS GCA 90 bp | GCAGCCTCTCTTGCCCTCTCTACCCATGGAATTGTAGCAGTCACTTaGTCTCTGAAAATTCTTTATTGCATTAGGACATCCTCTCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: AASLALSTHGIVAVT*SLKILYCIRTSSPE Trigger: CTCTGGAGAGGATGTCCTAATGCAATAAAGAATTTTCAGAGAGCAAGTGACTGCTACAATTCCATGGGTAGAGAGGGCAAGAGAGGCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS CCA 90 bp | GGAGCTCAGTCTGAGATGTGCAGTCTAATCATCATCTGCTCCATTTaGGGGCTGCTTAAGAGTTCCAAAAGTGCTTCCACATGCAATATC | + |
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Preference number: 5 (lower is better) Translates to: GAQSEMCSLIIICSI*GLLKSSKSASTCNI Trigger: GATATTGCATGTGGAAGCACTTTTGGAACTCTTAAGCAGCCCCCAAATGGAGCAGATGATGATTAGACTGCACATCTCAGACTGAGCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS TCA 90 bp | ACTGTGAACTCCATGAGAGTGTCAGAGGCATGTGCATGTCACTTCTaGATCTCCAAAGCTGAACCTGCAGATAGCATATCTCCAAAGATG | + |
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Preference number: 5 (lower is better) Translates to: TVNSMRVSEACACHF*ISKAEPADSISPKM Trigger: CATCTTTGGAGATATGCTATCTGCAGGTTCAGCTTTGGAGATTCAGAAGTGACATGCACATGCCTCTGACACTCTCATGGAGTTCACAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000428485.1 ENST00000665903.1 |
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| CDS CCA 90 bp | TCCTGTTTGGCATTAACAAGCAGCCTCTCTTGCCCTCTCTACCCATaGAATTGTAGCAGTCACTTGCTCTCTGAAAATTCTTTATTGCAT | + |
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Preference number: 5 (lower is better) Translates to: SCLALTSSLSCPLYP*NCSSHLLSENSLLH Trigger: ATGCAATAAAGAATTTTCAGAGAGCAAGTGACTGCTACAATTCCATGGGTAGAGAGGGCAAGAGAGGCTGCTTGTTAATGCCAAACAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS CCA 90 bp | TTTGGGATTACATACCCCTTTGGTGTTACAAACAGATGTCCCAGTTaGATGAAGTCTCAGAAAACAGCAGATTTAATGAAATTTCAACTT | + |
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Preference number: 5 (lower is better) Translates to: FGITYPFGVTNRCPS*MKSQKTADLMKFQL Trigger: AAGTTGAAATTTCATTAAATCTGCTGTTTTCTGAGACTTCATCCAACTGGGACATCTGTTTGTAACACCAAAGGGGTATGTAATCCCAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000665903.1 |
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| CDS CCA 72 bp | GATGGTGCGGGAGGAACCCTGACCTGCCCTACAGTGTaGAGAAATGTGGGTTGGGGATGCCCTTCACTGTGG | + |
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Preference number: 6 (lower is better) Translates to: DGAGGTLTCPTV*RNVGWGCPSLW Trigger: CCACAGTGAAGGGCATCCCCAACCCACATTTCTCCACACTGTAGGGCAGGTCAGGGTTCCTCCCGCACCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS CAA 72 bp | CTTTGTGGGATGTGGAAATGGGCCCAGGCCCACCGCTaGCATGTAACTCCCAGAGATCTTCACCAGAAGAGT | + |
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Preference number: 6 (lower is better) Translates to: LCGMWKWAQAHR*HVTPRDLHQKS Trigger: ACTCTTCTGGTGAAGATCTCTGGGAGTTACATGCAAGCGGTGGGCCTGGGCCCATTTCCACATCCCACAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000428485.1 ENST00000665903.1 |
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| CDS TCA 72 bp | GTGGGTTGGGGATGCCCTTCACTGTGGGAAGTAGCTTaGAGATGCTTTAGGCACAGGTGTCATCCTACAAGC | + |
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Preference number: 6 (lower is better) Translates to: VGWGCPSLWEVA*RCFRHRCHPTS Trigger: GCTTGTAGGATGACACCTGTGCCTAAAGCATCTTCAAGCTACTTCCCACAGTGAAGGGCATCCCCAACCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS CCA 72 bp | CTGGATACACAAAGTAAATGCACTCTTTGTGGGATGTaGAAATGGGCCCAGGCCCACCGCTTGCATGTAACT | + |
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Preference number: 6 (lower is better) Translates to: LDTQSKCTLCGM*KWAQAHRLHVT Trigger: AGTTACATGCAAGCGGTGGGCCTGGGCCCATTTCCACATCCCACAAAGAGTGCATTTACTTTGTGTATCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000428485.1 ENST00000665903.1 |
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| CDS TCA 72 bp | CTTGCATGTAACTCCCAGAGATCTTCACCAGAAGAGTaGTTCAGAGTGCCCTTTTCAAGGGGCTCTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LACNSQRSSPEE*FRVPFSRGSLL Trigger: AAGGAGAGAGCCCCTTGAAAAGGGCACTCTGAATCACTCTTCTGGTGAAGATCTCTGGGAGTTACATGCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000428485.1 ENST00000665903.1 |
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| CDS GCA 72 bp | GTTGGGAGTTTTGCTCTTCTGGATACACAAAGTAAATaGACTCTTTGTGGGATGTGGAAATGGGCCCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: VGSFALLDTQSK*TLCGMWKWAQA Trigger: GGCCTGGGCCCATTTCCACATCCCACAAAGAGTGCATTTACTTTGTGTATCCAGAAGAGCAAAACTCCCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428485.1 ENST00000665903.1 |
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| CDS GCA 72 bp | TCCAAAAGTGCTTCCACATGCAATATCCTATGCCAGTaGCCCATCAGGACATTACCTTTGCCTGTTCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SKSASTCNILCQ*PIRTLPLPVPG Trigger: TCCAGGAACAGGCAAAGGTAATGTCCTGATGGGGCACTGGCATAGGATATTGCATGTGGAAGCACTTTTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS CAA 90 bp | AGAAATGTTGTGAACCTTATGCTAGGCCCACTGGGCTCTCTGACATaGACACACAGTGCTTTTCTGAGACAGCCAAGACTGACTTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: RNVVNLMLGPLGSLT*THSAFLRQPRLTLC Trigger: ACACAAAGTCAGTCTTGGCTGTCTCAGAAAAGCACTGTGTGTCAATGTCAGAGAGCCCAGTGGGCCTAGCATAAGGTTCACAACATTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665903.1 |
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| CDS GCA 72 bp | AAGAGTTCCAAAAGTGCTTCCACATGCAATATCCTATaGCAGTGCCCCATCAGGACATTACCTTTGCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: KSSKSASTCNIL*QCPIRTLPLPV Trigger: AACAGGCAAAGGTAATGTCCTGATGGGGCACTGGCATAGGATATTGCATGTGGAAGCACTTTTGGAACTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS CCA 72 bp | TCTGAGATGTGCAGTCTAATCATCATCTGCTCCATTTaGGGGCTGCTTAAGAGTTCCAAAAGTGCTTCCACA | + |
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Preference number: 6 (lower is better) Translates to: SEMCSLIIICSI*GLLKSSKSAST Trigger: TGTGGAAGCACTTTTGGAACTCTTAAGCAGCCCCCAAATGGAGCAGATGATGATTAGACTGCACATCTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428485.1 |
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| CDS CCA 72 bp | GAAAACAAAGCAGTAGAGTTGGGAGTTTTGCTCTTCTaGATACACAAAGTAAATGCACTCTTTGTGGGATGT | + |
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Preference number: 6 (lower is better) Translates to: ENKAVELGVLLF*IHKVNALFVGC Trigger: ACATCCCACAAAGAGTGCATTTACTTTGTGTATCCAGAAGAGCAAAACTCCCAACTCTACTGCTTTGTTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000428485.1 ENST00000665903.1 |
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| CDS CAA 72 bp | TGTCCGTTTGAAAACAAAGCAGTAGAGTTGGGAGTTTaGCTCTTCTGGATACACAAAGTAAATGCACTCTTT | + |
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Preference number: 6 (lower is better) Translates to: CPFENKAVELGV*LFWIHKVNALF Trigger: AAAGAGTGCATTTACTTTGTGTATCCAGAAGAGCAAAACTCCCAACTCTACTGCTTTGTTTTCAAACGGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428485.1 ENST00000665903.1 |
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