Pregenerated sensors for LINC01365 (Homo sapiens)
Ensembl gene IDs: ENSG00000250772Ensembl transcript IDs: ENST00000503266.6, ENST00000512219.1, ENST00000669300.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGAGGACACAGGGATGGAGCACTGCAAGAGTTCTTGGGAGAGCTTaGAATGCATCCTTTGTATCTGCGGCCAGGGGCAAATATTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: LRTQGWSTARVLGRA*NASFVSAARGKYSL Trigger: CAGGGAATATTTGCCCCTGGCCGCAGATACAAAGGATGCATTTCAAGCTCTCCCAAGAACTCTTGCAGTGCTCCATCCCTGTGTCCTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503266.6 ENST00000512219.1 ENST00000669300.1 |
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| CDS TCA 90 bp | GAAGCAGTGGCTTCTCACTATCCAACTGGAGTCTTTTTGAGCTGCTaGGACTCAGGGCCATTTCTGAGGACACAGGGATGGAGCACTGCA | + |
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Preference number: 5 (lower is better) Translates to: EAVASHYPTGVFLSC*DSGPFLRTQGWSTA Trigger: TGCAGTGCTCCATCCCTGTGTCCTCAGAAATGGCCCTGAGTCTCAGCAGCTCAAAAAGACTCCAGTTGGATAGTGAGAAGCCACTGCTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000503266.6 ENST00000512219.1 ENST00000669300.1 |
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| CDS CCA 90 bp | TTGGGAAGGTTCTTGCAAGGAAGCAGTGGCTTCTCACTATCCAACTaGAGTCTTTTTGAGCTGCTGAGACTCAGGGCCATTTCTGAGGAC | + |
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Preference number: 5 (lower is better) Translates to: LGRFLQGSSGFSLSN*SLFELLRLRAISED Trigger: GTCCTCAGAAATGGCCCTGAGTCTCAGCAGCTCAAAAAGACTCCAGTTGGATAGTGAGAAGCCACTGCTTCCTTGCAAGAACCTTCCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000503266.6 ENST00000512219.1 ENST00000669300.1 |
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| CDS CCA 90 bp | GAAGGTGAGGGGAATCAAGCATGTCTTCACATGGTTAGAGAAATTTaGGAAGGTTCTTGCAAGGAAGCAGTGGCTTCTCACTATCCAACT | + |
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Preference number: 5 (lower is better) Translates to: EGEGNQACLHMVREI*EGSCKEAVASHYPT Trigger: AGTTGGATAGTGAGAAGCCACTGCTTCCTTGCAAGAACCTTCCCAAATTTCTCTAACCATGTGAAGACATGCTTGATTCCCCTCACCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503266.6 |
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| CDS CCA 90 bp | AGAAAAATCATGGTGAAGGTGAGGGGAATCAAGCATGTCTTCACATaGTTAGAGAAATTTGGGAAGGTTCTTGCAAGGAAGCAGTGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: RKIMVKVRGIKHVFT*LEKFGKVLARKQWL Trigger: AAGCCACTGCTTCCTTGCAAGAACCTTCCCAAATTTCTCTAACCATGTGAAGACATGCTTGATTCCCCTCACCTTCACCATGATTTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000503266.6 |
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| CDS CCA 90 bp | TTTGAGGTCAAAGGTGTATTAAACTCTGAATTAGCCACTTGGCTCTaGCTAAAGTCTTCAGTTTCTTCACCTCACCAATGGAAGAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: FEVKGVLNSELATWL*LKSSVSSPHQWKRL Trigger: CAGCCTCTTCCATTGGTGAGGTGAAGAAACTGAAGACTTTAGCCAGAGCCAAGTGGCTAATTCAGAGTTTAATACACCTTTGACCTCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512219.1 |
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| CDS CCA 90 bp | AAAGGGTTTGAGGTCAAAGGTGTATTAAACTCTGAATTAGCCACTTaGCTCTGGCTAAAGTCTTCAGTTTCTTCACCTCACCAATGGAAG | + |
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Preference number: 5 (lower is better) Translates to: KGFEVKGVLNSELAT*LWLKSSVSSPHQWK Trigger: CTTCCATTGGTGAGGTGAAGAAACTGAAGACTTTAGCCAGAGCCAAGTGGCTAATTCAGAGTTTAATACACCTTTGACCTCAAACCCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512219.1 |
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| CDS TCA 90 bp | TTCAGTTTCTTCACCTCACCAATGGAAGAGGCTGTTCCTTCATGCTaGGCTCACCCTCACATTTTATGTGACATTCTTAACAATTTTACT | + |
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Preference number: 5 (lower is better) Translates to: FSFFTSPMEEAVPSC*AHPHILCDILNNFT Trigger: AGTAAAATTGTTAAGAATGTCACATAAAATGTGAGGGTGAGCTCAGCATGAAGGAACAGCCTCTTCCATTGGTGAGGTGAAGAAACTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000512219.1 |
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| CDS GCA 90 bp | CTTTTTGTTATTCTCCCAGAAATTAGAGAAATTTGGGAAGGTTCTTaGAAGGAAGCAGTGGCTTCTCACTATCCAACTGGAGTCTTTTTG | + |
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Preference number: 5 (lower is better) Translates to: LFVILPEIREIWEGS*KEAVASHYPTGVFL Trigger: CAAAAAGACTCCAGTTGGATAGTGAGAAGCCACTGCTTCCTTGCAAGAACCTTCCCAAATTTCTCTAATTTCTGGGAGAATAACAAAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000512219.1 ENST00000669300.1 |
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| CDS CCA 90 bp | AAAGGGTTTGAGGTCAAAGGTGTATTAAACTCTGAATTAGCCACTTaGCTCTGGCTAAAGTCTTCAGTTTCTTCACCTGAAATTAATGTT | + |
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Preference number: 5 (lower is better) Translates to: KGFEVKGVLNSELAT*LWLKSSVSSPEINV Trigger: AACATTAATTTCAGGTGAAGAAACTGAAGACTTTAGCCAGAGCCAAGTGGCTAATTCAGAGTTTAATACACCTTTGACCTCAAACCCTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000503266.6 ENST00000669300.1 |
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| CDS CCA 90 bp | TTTGAGGTCAAAGGTGTATTAAACTCTGAATTAGCCACTTGGCTCTaGCTAAAGTCTTCAGTTTCTTCACCTGAAATTAATGTTTCTATT | + |
|
Preference number: 5 (lower is better) Translates to: FEVKGVLNSELATWL*LKSSVSSPEINVSI Trigger: AATAGAAACATTAATTTCAGGTGAAGAAACTGAAGACTTTAGCCAGAGCCAAGTGGCTAATTCAGAGTTTAATACACCTTTGACCTCAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000503266.6 ENST00000669300.1 |
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| CDS CAA 90 bp | TCTGAGGACACAGGGATGGAGCACTGCAAGAGTTCTTGGGAGAGCTaGAAATGCATCCTTTGTATCTGCGGCCAGGGGCAAATATTCCCT | + |
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Preference number: 6 (lower is better) Translates to: SEDTGMEHCKSSWES*KCILCICGQGQIFP Trigger: AGGGAATATTTGCCCCTGGCCGCAGATACAAAGGATGCATTTCAAGCTCTCCCAAGAACTCTTGCAGTGCTCCATCCCTGTGTCCTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503266.6 ENST00000512219.1 ENST00000669300.1 |
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| CDS GCA 72 bp | AGTTCTTGGGAGAGCTTGAAATGCATCCTTTGTATCTaGGGCCAGGGGCAAATATTCCCTGTGAGGACCACA | + |
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Preference number: 6 (lower is better) Translates to: SSWESLKCILCI*GQGQIFPVRTT Trigger: TGTGGTCCTCACAGGGAATATTTGCCCCTGGCCGCAGATACAAAGGATGCATTTCAAGCTCTCCCAAGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503266.6 ENST00000512219.1 ENST00000669300.1 |
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| CDS CCA 72 bp | TTCTTGCAAGGAAGCAGTGGCTTCTCACTATCCAACTaGAGTCTTTTTGAGCTGCTGAGACTCAGGGCCATT | + |
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Preference number: 6 (lower is better) Translates to: FLQGSSGFSLSN*SLFELLRLRAI Trigger: AATGGCCCTGAGTCTCAGCAGCTCAAAAAGACTCCAGTTGGATAGTGAGAAGCCACTGCTTCCTTGCAAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000503266.6 ENST00000512219.1 ENST00000669300.1 |
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| CDS TCA 72 bp | TTCACCTCACCAATGGAAGAGGCTGTTCCTTCATGCTaGGCTCACCCTCACATTTTATGTGACATTCTTAAC | + |
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Preference number: 6 (lower is better) Translates to: FTSPMEEAVPSC*AHPHILCDILN Trigger: GTTAAGAATGTCACATAAAATGTGAGGGTGAGCTCAGCATGAAGGAACAGCCTCTTCCATTGGTGAGGTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512219.1 |
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