Pregenerated sensors for LINC01363 (Homo sapiens)

Ensembl gene IDs: ENSG00000231605

Ensembl transcript IDs: ENST00000426709.5, ENST00000428030.5, ENST00000446687.1, ENST00000457941.6

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCTGATGCACAAGCCCACAGTAGGGTGAGCAAGCCTGGAGTAGGGTaGCAACATGGAGGAGGGAGCGCCTGGCTCTGCCAGGAATCGGCC	+
Preference number: 5 (lower is better) Translates to: ADAQAHSRVSKPGVG*QHGGGSAWLCQESA Trigger: GGCCGATTCCTGGCAGAGCCAGGCGCTCCCTCCTCCATGTTGTCACCCTACTCCAGGCTTGCTCACCCTACTGTGGGCTTGTGCATCAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457941.6
CDS GCA 90 bp	CATGGGCCTAGTTTAAGAGCAGAGCCACTGGATGCACACCACGTGTaGTCATCAGATCACAGAAGCAGTCATTCTCAGACACAAGGGCCT	+
Preference number: 5 (lower is better) Translates to: HGPSLRAEPLDAHHV*SSDHRSSHSQTQGP Trigger: AGGCCCTTGTGTCTGAGAATGACTGCTTCTGTGATCTGATGAGCACACGTGGTGTGCATCCAGTGGCTCTGCTCTTAAACTAGGCCCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426709.5 ENST00000446687.1 ENST00000457941.6
CDS GCA 90 bp	AGCGCCTGGCTCTGCCAGGAATCGGCCAAGGCTCAACAGTGTTTATaGCTTAAGACAAGAAAACAGCACGGAGTTGAGAGCTTAAGCTCT	+
Preference number: 5 (lower is better) Translates to: SAWLCQESAKAQQCL*LKTRKQHGVESLSS Trigger: AGAGCTTAAGCTCTCAACTCCGTGCTGTTTTCTTGTCTTAAGGCATAAACACTGTTGAGCCTTGGCCGATTCCTGGCAGAGCCAGGCGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457941.6
CDS TCA 90 bp	ATGCAATTCATCCTGAGGCAAAATTCCTCTGCATCTGTGAACCTATaGGCTCTAGTTGAAAGGTCTTTACATCCCTGGGTACTGCTAGCA	+
Preference number: 5 (lower is better) Translates to: MQFILRQNSSASVNL*ALVERSLHPWVLLA Trigger: TGCTAGCAGTACCCAGGGATGTAAAGACCTTTCAACTAGAGCTCATAGGTTCACAGATGCAGAGGAATTTTGCCTCAGGATGAATTGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428030.5
CDS TCA 72 bp	CAAGCCCACAGTAGGGTGAGCAAGCCTGGAGTAGGGTaGCAACATGGAGGAGGGAGCGCCTGGCTCTGCCAG	+
Preference number: 6 (lower is better) Translates to: QAHSRVSKPGVG*QHGGGSAWLCQ Trigger: CTGGCAGAGCCAGGCGCTCCCTCCTCCATGTTGTCACCCTACTCCAGGCTTGCTCACCCTACTGTGGGCTTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457941.6
CDS GCA 72 bp	AGTTTAAGAGCAGAGCCACTGGATGCACACCACGTGTaGTCATCAGATCACAGAAGCAGTCATTCTCAGACA	+
Preference number: 6 (lower is better) Translates to: SLRAEPLDAHHV*SSDHRSSHSQT Trigger: TGTCTGAGAATGACTGCTTCTGTGATCTGATGAGCACACGTGGTGTGCATCCAGTGGCTCTGCTCTTAAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000426709.5 ENST00000446687.1 ENST00000457941.6
CDS TCA 72 bp	ATCCTGAGGCAAAATTCCTCTGCATCTGTGAACCTATaGGCTCTAGTTGAAAGGTCTTTACATCCCTGGGTA	+
Preference number: 6 (lower is better) Translates to: ILRQNSSASVNL*ALVERSLHPWV Trigger: TACCCAGGGATGTAAAGACCTTTCAACTAGAGCTCATAGGTTCACAGATGCAGAGGAATTTTGCCTCAGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428030.5
CDS CAA 72 bp	TACCTCCCAAAGTTCCCACCACATAATACCATCACATaGGGGATTAGAATTTCAACATATGTATTCTGGGGA	+
Preference number: 6 (lower is better) Translates to: YLPKFPPHNTIT*GIRISTYVFWG Trigger: TCCCCAGAATACATATGTTGAAATTCTAATCCCCAATGTGATGGTATTATGTGGTGGGAACTTTGGGAGGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000428030.5 ENST00000446687.1 ENST00000457941.6
CDS CCA 72 bp	TCCGAAGTCTCATTGAAATATTATCTAAATCAGGTTTaGGTGAGACTGAAGATGCAATTCATCCTGAGGCAA	+
Preference number: 6 (lower is better) Translates to: SEVSLKYYLNQV*VRLKMQFILRQ Trigger: TTGCCTCAGGATGAATTGCATCTTCAGTCTCACCCAAACCTGATTTAGATAATATTTCAATGAGACTTCGGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000426709.5 ENST00000428030.5 ENST00000446687.1 ENST00000457941.6