Pregenerated sensors for LINC01360 (Homo sapiens)
Ensembl gene IDs: ENSG00000233973Ensembl transcript IDs: ENST00000411903.1, ENST00000415686.6, ENST00000440762.5, ENST00000444827.6, ENST00000452553.2, ENST00000635317.1, ENST00000654152.1, ENST00000656781.1, ENST00000657455.1, ENST00000658942.1, ENST00000661322.1, ENST00000661787.1, ENST00000662360.1, ENST00000663350.1, ENST00000664468.1, ENST00000666103.1, ENST00000670941.1
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TACTCCAAGGAATACACCTGGCCTGAGGCCCAGTTTGCGTCATCCTaGTTTCAGCGCAGCAGTGGTGGGCTAACTCTTCCTAACATCCCT | + |
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Preference number: 5 (lower is better) Translates to: YSKEYTWPEAQFASS*FQRSSGGLTLPNIP Trigger: AGGGATGTTAGGAAGAGTTAGCCCACCACTGCTGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGTGTATTCCTTGGAGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000452553.2 ENST00000654152.1 ENST00000663350.1 |
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| CDS TCA 90 bp | GATGGTCACTTCTTCAAGGTGTCAGTTTATATTCTAAGCCTGGCCTaGGGCCCAGTTTGCGTCATCCTGGTTTCAGCGCAGCAGTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: DGHFFKVSVYILSLA*GPVCVILVSAQQWW Trigger: CCACCACTGCTGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGCTTAGAATATAAACTGACACCTTGAAGAAGTGACCATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415686.6 ENST00000657455.1 ENST00000662360.1 |
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| CDS TCA 90 bp | GCTTTAACAGGTGCAGAGTCTGAGGTGACAGGGAGTTTGGTTTATTaGTCTGGCCTGAGGCCCAGTTTGCGTCATCCTGGTTTCAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: ALTGAESEVTGSLVY*SGLRPSLRHPGFSA Trigger: TGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGATCAATAAACCAAACTCCCTGTCACCTCAGACTCTGCACCTGTTAAAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444827.6 ENST00000664468.1 |
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| CDS TCA 90 bp | TCTCCATCAATATTTCTCTGTCTAGACAAGATGTTGATCCTGGCCTaGGGCCCAGTTTGCGTCATCCTGGTTTCAGCGCAGCAGTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: SPSIFLCLDKMLILA*GPVCVILVSAQQWW Trigger: CCACCACTGCTGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGATCAACATCTTGTCTAGACAGAGAAATATTGATGGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS GCA 90 bp | TTAAGGTTACCCAGTATGATCTCCTTTTTGATGAATTTGGTTCACTaGAAGCTTTGCCTCCCGTGTCCACACCATTCTCGGGCCTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: LRLPSMISFLMNLVH*KLCLPCPHHSRASA Trigger: GGCTGAGGCCCGAGAATGGTGTGGACACGGGAGGCAAAGCTTGCAGTGAACCAAATTCATCAAAAAGGAGATCATACTGGGTAACCTTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS TCA 90 bp | GAACACCAGCTTTACTGCGTGCGATTCAGGTTCAGAAAGCTGTTTTaGGAATTCTTGACTCCAGAGCCAAACTGGTTCTTCCACATCTTC | + |
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Preference number: 5 (lower is better) Translates to: EHQLYCVRFRFRKLF*EFLTPEPNWFFHIF Trigger: GAAGATGTGGAAGAACCAGTTTGGCTCTGGAGTCAAGAATTCTCAAAACAGCTTTCTGAACCTGAATCGCACGCAGTAAAGCTGGTGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000411903.1 ENST00000440762.5 ENST00000452553.2 ENST00000635317.1 ENST00000657455.1 ENST00000661322.1 ENST00000661787.1 ENST00000670941.1 |
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| CDS TCA 90 bp | CAGAGTCCTCTTTCACGTGGTTGTAGGACTAAAGTTATTGTTTATTaGTTGGCTGTCCACTGGAGATCACTCGTACTTTCTAGAGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: QSPLSRGCRTKVIVY*LAVHWRSLVLSRGL Trigger: GAGGCCTCTAGAAAGTACGAGTGATCTCCAGTGGACAGCCAATCAATAAACAATAACTTTAGTCCTACAACCACGTGAAAGAGGACTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS CCA 90 bp | CTGCAGGATTCTGCATCTGGGTCTCTGCCTGGTTTGTTTCAAAATTaGCCCTTGGAATTTTCTTCCACATCTTCTAGTTGTTCACTCTCT | + |
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Preference number: 5 (lower is better) Translates to: LQDSASGSLPGLFQN*PLEFSSTSSSCSLS Trigger: AGAGAGTGAACAACTAGAAGATGTGGAAGAAAATTCCAAGGGCCAATTTTGAAACAAACCAGGCAGAGACCCAGATGCAGAATCCTGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000415686.6 ENST00000444827.6 ENST00000656781.1 ENST00000663350.1 |
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| CDS CCA 90 bp | CCTAACATCCCTCAGCCTGCAGGATTCTGCATCTGGGTCTCTGCCTaGTTTGTTTCAAAATTGGCCCTTGGAATTTTCATAATAAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: PNIPQPAGFCIWVSA*FVSKLALGIFIIRN Trigger: GTTTCTTATTATGAAAATTCCAAGGGCCAATTTTGAAACAAACCAGGCAGAGACCCAGATGCAGAATCCTGCAGGCTGAGGGATGTTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000440762.5 ENST00000452553.2 ENST00000654152.1 ENST00000657455.1 ENST00000661322.1 ENST00000664468.1 ENST00000666103.1 |
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| CDS CCA 90 bp | GCTTGTACCATGGCCCCCTTCATAGGGAGTTCACAGTATTGTTACTaGTTTCTTCTAGGGCAGTGGGAGAAACTCTACTTTCAAATCTTT | + |
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Preference number: 5 (lower is better) Translates to: ACTMAPFIGSSQYCY*FLLGQWEKLYFQIF Trigger: AAAGATTTGAAAGTAGAGTTTCTCCCACTGCCCTAGAAGAAACCAGTAACAATACTGTGAACTCCCTATGAAGGGGGCCATGGTACAAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS TCA 90 bp | CTTTATGTTCACTACACTTTTGCCATTTTGCCTGGATCAGCAAGGTaGTACCATAAATGTTGGCTTCAGGAGAACACCAGCTTTACTGCG | + |
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Preference number: 5 (lower is better) Translates to: LYVHYTFAILPGSAR*YHKCWLQENTSFTA Trigger: CGCAGTAAAGCTGGTGTTCTCCTGAAGCCAACATTTATGGTATCACCTTGCTGATCCAGGCAAAATGGCAAAAGTGTAGTGAACATAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 12 transcripts: ENST00000411903.1 ENST00000440762.5 ENST00000452553.2 ENST00000635317.1 ENST00000654152.1 ENST00000657455.1 ENST00000658942.1 ENST00000661322.1 ENST00000661787.1 ENST00000664468.1 ENST00000666103.1 ENST00000670941.1 |
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| CDS TCA 90 bp | TTTTGGCAAGAATGTGGAGAGAGTGTGACTGTCATACGTGGCTGGTaGAAATGTACAATGGTACTGTTGCTTTGGAAGATAGTCCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: FWQECGESVTVIRGW*KCTMVLLLWKIVQK Trigger: CTTCTGGACTATCTTCCAAAGCAACAGTACCATTGTACATTTTCACCAGCCACGTATGACAGTCACACTCTCTCCACATTCTTGCCAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000452553.2 ENST00000654152.1 ENST00000663350.1 |
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| CDS TCA 90 bp | GAACACCAGCTTTACTGCGTGCGATTCAGGTTCAGAAAGCTGTTTTaGGAATTCTTGACTCCAGAGCCAAACTGGTTCCTCTTAATACTA | + |
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Preference number: 5 (lower is better) Translates to: EHQLYCVRFRFRKLF*EFLTPEPNWFLLIL Trigger: TAGTATTAAGAGGAACCAGTTTGGCTCTGGAGTCAAGAATTCTCAAAACAGCTTTCTGAACCTGAATCGCACGCAGTAAAGCTGGTGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000654152.1 ENST00000658942.1 ENST00000666103.1 |
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| CDS CCA 90 bp | ATTCTGCATCTGGGTCTCTGCCTGGTTTGTTTCAAAATTGGCCCTTaGAATTTTCTTCCACATCTTCTAGTTGTTCACTCTCTTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: ILHLGLCLVCFKIGP*NFLPHLLVVHSLSE Trigger: CTCAGAAAGAGAGTGAACAACTAGAAGATGTGGAAGAAAATTCCAAGGGCCAATTTTGAAACAAACCAGGCAGAGACCCAGATGCAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000415686.6 ENST00000444827.6 ENST00000656781.1 ENST00000663350.1 |
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| CDS CCA 90 bp | TTCATAGGGAGTTCACAGTATTGTTACTGGTTTCTTCTAGGGCAGTaGGAGAAACTCTACTTTCAAATCTTTCTCTACAGGGAATGTCTG | + |
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Preference number: 5 (lower is better) Translates to: FIGSSQYCYWFLLGQ*EKLYFQIFLYRECL Trigger: CAGACATTCCCTGTAGAGAAAGATTTGAAAGTAGAGTTTCTCCCACTGCCCTAGAAGAAACCAGTAACAATACTGTGAACTCCCTATGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS CCA 90 bp | ATTCTGCATCTGGGTCTCTGCCTGGTTTGTTTCAAAATTGGCCCTTaGAATTTTCATAATAAGAAACTTGGTACAGAGGACATCCACAAT | + |
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Preference number: 5 (lower is better) Translates to: ILHLGLCLVCFKIGP*NFHNKKLGTEDIHN Trigger: ATTGTGGATGTCCTCTGTACCAAGTTTCTTATTATGAAAATTCCAAGGGCCAATTTTGAAACAAACCAGGCAGAGACCCAGATGCAGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000440762.5 ENST00000452553.2 ENST00000654152.1 ENST00000657455.1 ENST00000661322.1 ENST00000664468.1 ENST00000666103.1 |
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| CDS TCA 90 bp | CTTTCTCTACAGGGAATGTCTGGATTCTCTTTTAAAGAGCTCATCTaGTTAAGGTTACCCAGTATGATCTCCTTTTTGATGAATTTGGTT | + |
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Preference number: 5 (lower is better) Translates to: LSLQGMSGFSFKELI*LRLPSMISFLMNLV Trigger: AACCAAATTCATCAAAAAGGAGATCATACTGGGTAACCTTAATCAGATGAGCTCTTTAAAAGAGAATCCAGACATTCCCTGTAGAGAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS TCA 72 bp | CTCCCGTGTCCACACCATTCTCGGGCCTCAGCCTCCTaGGTAGCTGGAACTACAGGCGCCCGCCACCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LPCPHHSRASAS*VAGTTGARHQG Trigger: GCCTTGGTGGCGGGCGCCTGTAGTTCCAGCTACTCAGGAGGCTGAGGCCCGAGAATGGTGTGGACACGGGAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS CAA 72 bp | TCTAGACAAGATGTTGATCCTGGCCTGAGGCCCAGTTaGCGTCATCCTGGTTTCAGCGCAGCAGTGGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SRQDVDPGLRPS*RHPGFSAAVVG Trigger: GCCCACCACTGCTGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGATCAACATCTTGTCTAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS CAA 72 bp | TATACTCCAAGGAATACACCTGGCCTGAGGCCCAGTTaGCGTCATCCTGGTTTCAGCGCAGCAGTGGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: YTPRNTPGLRPS*RHPGFSAAVVG Trigger: GCCCACCACTGCTGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGTGTATTCCTTGGAGTATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000452553.2 ENST00000654152.1 ENST00000663350.1 |
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| CDS CAA 72 bp | GTCAGTTTATATTCTAAGCCTGGCCTGAGGCCCAGTTaGCGTCATCCTGGTTTCAGCGCAGCAGTGGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: VSLYSKPGLRPS*RHPGFSAAVVG Trigger: GCCCACCACTGCTGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGCTTAGAATATAAACTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415686.6 ENST00000657455.1 ENST00000662360.1 |
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| CDS TCA 72 bp | AAACCTTCAGTTATACTCCAAGGAATACACCTGGCCTaGGGCCCAGTTTGCGTCATCCTGGTTTCAGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: KPSVILQGIHLA*GPVCVILVSAQ Trigger: CTGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGTGTATTCCTTGGAGTATAACTGAAGGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000452553.2 ENST00000654152.1 ENST00000663350.1 |
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| CDS GCA 72 bp | ATCTCCTTTTTGATGAATTTGGTTCACTGCAAGCTTTaGCTCCCGTGTCCACACCATTCTCGGGCCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: ISFLMNLVHCKL*LPCPHHSRASA Trigger: GGCTGAGGCCCGAGAATGGTGTGGACACGGGAGGCAAAGCTTGCAGTGAACCAAATTCATCAAAAAGGAGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS TCA 72 bp | TTCTTCAAGGTGTCAGTTTATATTCTAAGCCTGGCCTaGGGCCCAGTTTGCGTCATCCTGGTTTCAGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: FFKVSVYILSLA*GPVCVILVSAQ Trigger: CTGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGCTTAGAATATAAACTGACACCTTGAAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415686.6 ENST00000657455.1 ENST00000662360.1 |
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| CDS TCA 72 bp | ATATTTCTCTGTCTAGACAAGATGTTGATCCTGGCCTaGGGCCCAGTTTGCGTCATCCTGGTTTCAGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: IFLCLDKMLILA*GPVCVILVSAQ Trigger: CTGCGCTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGATCAACATCTTGTCTAGACAGAGAAATAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS CCA 72 bp | CTTCCTAACATCCCTCAGCCTGCAGGATTCTGCATCTaGGTCTCTGCCTGGTTTGTTTCAAAATTGGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: LPNIPQPAGFCI*VSAWFVSKLAL Trigger: AAGGGCCAATTTTGAAACAAACCAGGCAGAGACCCAGATGCAGAATCCTGCAGGCTGAGGGATGTTAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 12 transcripts: ENST00000415686.6 ENST00000440762.5 ENST00000444827.6 ENST00000452553.2 ENST00000654152.1 ENST00000656781.1 ENST00000657455.1 ENST00000661322.1 ENST00000662360.1 ENST00000663350.1 ENST00000664468.1 ENST00000666103.1 |
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| CDS CCA 72 bp | CAAGTAAACCTTCAGTTATACTCCAAGGAATACACCTaGCCTGAGGCCCAGTTTGCGTCATCCTGGTTTCAG | + |
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Preference number: 6 (lower is better) Translates to: QVNLQLYSKEYT*PEAQFASSWFQ Trigger: CTGAAACCAGGATGACGCAAACTGGGCCTCAGGCCAGGTGTATTCCTTGGAGTATAACTGAAGGTTTACTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000452553.2 ENST00000654152.1 ENST00000663350.1 |
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| CDS CAA 90 bp | ACATCCCTCAGCCTGCAGGATTCTGCATCTGGGTCTCTGCCTGGTTaGTTTCAAAATTGGCCCTTGGAATTTTCTTCCACATCTTCTAGT | + |
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Preference number: 6 (lower is better) Translates to: TSLSLQDSASGSLPG*FQNWPLEFSSTSSS Trigger: ACTAGAAGATGTGGAAGAAAATTCCAAGGGCCAATTTTGAAACAAACCAGGCAGAGACCCAGATGCAGAATCCTGCAGGCTGAGGGATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000415686.6 ENST00000444827.6 ENST00000656781.1 ENST00000663350.1 |
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| CDS GCA 72 bp | CTAACTCTTCCTAACATCCCTCAGCCTGCAGGATTCTaGATCTGGGTCTCTGCCTGGTTTGTTTCAAAATTG | + |
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Preference number: 6 (lower is better) Translates to: LTLPNIPQPAGF*IWVSAWFVSKL Trigger: CAATTTTGAAACAAACCAGGCAGAGACCCAGATGCAGAATCCTGCAGGCTGAGGGATGTTAGGAAGAGTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 12 transcripts: ENST00000415686.6 ENST00000440762.5 ENST00000444827.6 ENST00000452553.2 ENST00000654152.1 ENST00000656781.1 ENST00000657455.1 ENST00000661322.1 ENST00000662360.1 ENST00000663350.1 ENST00000664468.1 ENST00000666103.1 |
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| CDS CAA 72 bp | TTGTACCATGGCCCCCTTCATAGGGAGTTCACAGTATaGTTACTGGTTTCTTCTAGGGCAGTGGGAGAAACT | + |
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Preference number: 6 (lower is better) Translates to: LYHGPLHREFTV*LLVSSRAVGET Trigger: AGTTTCTCCCACTGCCCTAGAAGAAACCAGTAACAATACTGTGAACTCCCTATGAAGGGGGCCATGGTACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS CAA 90 bp | AGGACATCCACAATCTCAGCCCCTGGCTTTATGTTCACTACACTTTaGCCATTTTGCCTGGATCAGCAAGGTGATACCATAAATGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: RTSTISAPGFMFTTL*PFCLDQQGDTINVG Trigger: GCCAACATTTATGGTATCACCTTGCTGATCCAGGCAAAATGGCAAAAGTGTAGTGAACATAAAGCCAGGGGCTGAGATTGTGGATGTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 12 transcripts: ENST00000411903.1 ENST00000440762.5 ENST00000452553.2 ENST00000635317.1 ENST00000654152.1 ENST00000657455.1 ENST00000658942.1 ENST00000661322.1 ENST00000661787.1 ENST00000664468.1 ENST00000666103.1 ENST00000670941.1 |
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| CDS TCA 72 bp | CACTACACTTTTGCCATTTTGCCTGGATCAGCAAGGTaGTACCATAAATGTTGGCTTCAGGAGAACACCAGC | + |
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Preference number: 6 (lower is better) Translates to: HYTFAILPGSAR*YHKCWLQENTS Trigger: GCTGGTGTTCTCCTGAAGCCAACATTTATGGTATCACCTTGCTGATCCAGGCAAAATGGCAAAAGTGTAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 12 transcripts: ENST00000411903.1 ENST00000440762.5 ENST00000452553.2 ENST00000635317.1 ENST00000654152.1 ENST00000657455.1 ENST00000658942.1 ENST00000661322.1 ENST00000661787.1 ENST00000664468.1 ENST00000666103.1 ENST00000670941.1 |
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| CDS CAA 72 bp | GTTACAAGCAATGCTTTAGTCATGGCTGCATTCCATTaGCAGCTCAGAGTCCTCTTTCACGTGGTTGTAGGA | + |
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Preference number: 6 (lower is better) Translates to: VTSNALVMAAFH*QLRVLFHVVVG Trigger: TCCTACAACCACGTGAAAGAGGACTCTGAGCTGCAAATGGAATGCAGCCATGACTAAAGCATTGCTTGTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS CCA 72 bp | TTGGCAAGAATGTGGAGAGAGTGTGACTGTCATACGTaGCTGGTGAAAATGTACAATGGTACTGTTGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LARMWRECDCHT*LVKMYNGTVAL Trigger: CAAAGCAACAGTACCATTGTACATTTTCACCAGCCACGTATGACAGTCACACTCTCTCCACATTCTTGCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000452553.2 ENST00000654152.1 ENST00000663350.1 |
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| CDS CAA 72 bp | ACAATCTCAGCCCCTGGCTTTATGTTCACTACACTTTaGCCATTTTGCCTGGATCAGCAAGGTGATACCATA | + |
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Preference number: 6 (lower is better) Translates to: TISAPGFMFTTL*PFCLDQQGDTI Trigger: TATGGTATCACCTTGCTGATCCAGGCAAAATGGCAAAAGTGTAGTGAACATAAAGCCAGGGGCTGAGATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 12 transcripts: ENST00000411903.1 ENST00000440762.5 ENST00000452553.2 ENST00000635317.1 ENST00000654152.1 ENST00000657455.1 ENST00000658942.1 ENST00000661322.1 ENST00000661787.1 ENST00000664468.1 ENST00000666103.1 ENST00000670941.1 |
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| CDS CAA 72 bp | TTAAGGTTACCCAGTATGATCTCCTTTTTGATGAATTaGGTTCACTGCAAGCTTTGCCTCCCGTGTCCACAC | + |
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Preference number: 6 (lower is better) Translates to: LRLPSMISFLMN*VHCKLCLPCPH Trigger: GTGTGGACACGGGAGGCAAAGCTTGCAGTGAACCAAATTCATCAAAAAGGAGATCATACTGGGTAACCTTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS TCA 72 bp | GAATGTGGAGAGAGTGTGACTGTCATACGTGGCTGGTaGAAATGTACAATGGTACTGTTGCTTTGGAAGATA | + |
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Preference number: 6 (lower is better) Translates to: ECGESVTVIRGW*KCTMVLLLWKI Trigger: TATCTTCCAAAGCAACAGTACCATTGTACATTTTCACCAGCCACGTATGACAGTCACACTCTCTCCACATTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000452553.2 ENST00000654152.1 ENST00000663350.1 |
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| CDS GCA 72 bp | TTTCTGAGTGTAACATCTATGCATCTCTCTGTGATATaGAGTGTCCTTTTCTCTCAGGCTGTTAGTGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: FLSVTSMHLSVI*SVLFSQAVSAG Trigger: ACCTGCACTAACAGCCTGAGAGAAAAGGACACTGCATATCACAGAGAGATGCATAGATGTTACACTCAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000415686.6 ENST00000440762.5 ENST00000444827.6 ENST00000656781.1 ENST00000658942.1 ENST00000661787.1 ENST00000662360.1 ENST00000663350.1 |
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| CDS CCA 72 bp | CTGGGTCTCTGCCTGGTTTGTTTCAAAATTGGCCCTTaGAATTTTCTTCCACATCTTCTAGTTGTTCACTCT | + |
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Preference number: 6 (lower is better) Translates to: LGLCLVCFKIGP*NFLPHLLVVHS Trigger: AGAGTGAACAACTAGAAGATGTGGAAGAAAATTCCAAGGGCCAATTTTGAAACAAACCAGGCAGAGACCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000415686.6 ENST00000444827.6 ENST00000656781.1 ENST00000663350.1 |
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| CDS CAA 72 bp | TCTGGGTCTCTGCCTGGTTTGTTTCAAAATTGGCCCTaGGAATTTTCTTCCACATCTTCTAGTTGTTCACTC | + |
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Preference number: 6 (lower is better) Translates to: SGSLPGLFQNWP*EFSSTSSSCSL Trigger: GAGTGAACAACTAGAAGATGTGGAAGAAAATTCCAAGGGCCAATTTTGAAACAAACCAGGCAGAGACCCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000415686.6 ENST00000444827.6 ENST00000656781.1 ENST00000663350.1 |
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| CDS CAA 72 bp | AGAGTCCTCTTTCACGTGGTTGTAGGACTAAAGTTATaGTTTATTGATTGGCTGTCCACTGGAGATCACTCG | + |
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Preference number: 6 (lower is better) Translates to: RVLFHVVVGLKL*FIDWLSTGDHS Trigger: CGAGTGATCTCCAGTGGACAGCCAATCAATAAACAATAACTTTAGTCCTACAACCACGTGAAAGAGGACTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS TCA 72 bp | CTTTCACGTGGTTGTAGGACTAAAGTTATTGTTTATTaGTTGGCTGTCCACTGGAGATCACTCGTACTTTCT | + |
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Preference number: 6 (lower is better) Translates to: LSRGCRTKVIVY*LAVHWRSLVLS Trigger: AGAAAGTACGAGTGATCTCCAGTGGACAGCCAATCAATAAACAATAACTTTAGTCCTACAACCACGTGAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS TCA 72 bp | CAGGGAATGTCTGGATTCTCTTTTAAAGAGCTCATCTaGTTAAGGTTACCCAGTATGATCTCCTTTTTGATG | + |
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Preference number: 6 (lower is better) Translates to: QGMSGFSFKELI*LRLPSMISFLM Trigger: CATCAAAAAGGAGATCATACTGGGTAACCTTAATCAGATGAGCTCTTTAAAAGAGAATCCAGACATTCCCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000440762.5 |
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| CDS CAA 72 bp | TTGGCCCTTGGAATTTTCCTCTTAATACTAAAAAGCTaGCCTTCCACATCTTCTAGTTGTTCACTCTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LALGIFLLILKS*PSTSSSCSLSF Trigger: GAAAGAGAGTGAACAACTAGAAGATGTGGAAGGCAAGCTTTTTAGTATTAAGAGGAAAATTCCAAGGGCCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662360.1 |
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