Pregenerated sensors for LINC01357 (Homo sapiens)
Ensembl gene IDs: ENSG00000224167Ensembl transcript IDs: ENST00000422022.1, ENST00000456651.1, ENST00000658577.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTTGGGGAACTTCCCGAGGTCACTGAACTGGTGTCAGGCCCAGATTaGAATCCAAACACATCCCAGCCCATGCCCGGCTCCCCAGCGCCG | + |
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Preference number: 5 (lower is better) Translates to: VGELPEVTELVSGPD*NPNTSQPMPGSPAP Trigger: CGGCGCTGGGGAGCCGGGCATGGGCTGGGATGTGTTTGGATTCCAATCTGGGCCTGACACCAGTTCAGTGACCTCGGGAAGTTCCCCAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000422022.1 ENST00000456651.1 ENST00000658577.1 |
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| CDS CCA 90 bp | TTTAATACCCACCAGGAGCCAGTCGCCGCGGGCCTGGCTCTGTGGTaGCAAGTTGCATGGGTTCTCCCATCAGGACCTCCCGATGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: FNTHQEPVAAGLALW*QVAWVLPSGPPDEP Trigger: AGGCTCATCGGGAGGTCCTGATGGGAGAACCCATGCAACTTGCCACCACAGAGCCAGGCCCGCGGCGACTGGCTCCTGGTGGGTATTAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000422022.1 ENST00000456651.1 ENST00000658577.1 |
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| CDS CCA 90 bp | GTCTTTAATACCCACCAGGAGCCAGTCGCCGCGGGCCTGGCTCTGTaGTGGCAAGTTGCATGGGTTCTCCCATCAGGACCTCCCGATGAG | + |
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Preference number: 5 (lower is better) Translates to: VFNTHQEPVAAGLAL*WQVAWVLPSGPPDE Trigger: CTCATCGGGAGGTCCTGATGGGAGAACCCATGCAACTTGCCACCACAGAGCCAGGCCCGCGGCGACTGGCTCCTGGTGGGTATTAAAGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000422022.1 ENST00000456651.1 ENST00000658577.1 |
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| CDS TCA 90 bp | GGGGCCATTGAAGGTTTGATTGAGCCTGCGGAAGGTCTCATGCTGTaGAAAGCTTCCTCAGCAGGCAACCCTGCTCTTCTTTCCCGACTC | + |
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Preference number: 5 (lower is better) Translates to: GAIEGLIEPAEGLML*KASSAGNPALLSRL Trigger: GAGTCGGGAAAGAAGAGCAGGGTTGCCTGCTGAGGAAGCTTTTCACAGCATGAGACCTTCCGCAGGCTCAATCAAACCTTCAATGGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456651.1 |
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| CDS CCA 72 bp | CACCAGGAGCCAGTCGCCGCGGGCCTGGCTCTGTGGTaGCAAGTTGCATGGGTTCTCCCATCAGGACCTCCC | + |
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Preference number: 6 (lower is better) Translates to: HQEPVAAGLALW*QVAWVLPSGPP Trigger: GGGAGGTCCTGATGGGAGAACCCATGCAACTTGCCACCACAGAGCCAGGCCCGCGGCGACTGGCTCCTGGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000422022.1 ENST00000456651.1 ENST00000658577.1 |
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| CDS CAA 90 bp | CCCACCAGGAGCCAGTCGCCGCGGGCCTGGCTCTGTGGTGGCAAGTaGCATGGGTTCTCCCATCAGGACCTCCCGATGAGCCTACGAGGT | + |
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Preference number: 6 (lower is better) Translates to: PTRSQSPRAWLCGGK*HGFSHQDLPMSLRG Trigger: ACCTCGTAGGCTCATCGGGAGGTCCTGATGGGAGAACCCATGCAACTTGCCACCACAGAGCCAGGCCCGCGGCGACTGGCTCCTGGTGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000422022.1 ENST00000456651.1 ENST00000658577.1 |
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| CDS CAA 72 bp | GTCGCCACTTCAGAGGGAGGAAACAGGCCCGCAGGGTaGGGGAACTTCCCGAGGTCACTGAACTGGTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: VATSEGGNRPAG*GNFPRSLNWCQ Trigger: CTGACACCAGTTCAGTGACCTCGGGAAGTTCCCCAACCCTGCGGGCCTGTTTCCTCCCTCTGAAGTGGCGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000422022.1 ENST00000456651.1 ENST00000658577.1 |
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| CDS CCA 72 bp | TCTTTAATACCCACCAGGAGCCAGTCGCCGCGGGCCTaGCTCTGTGGTGGCAAGTTGCATGGGTTCTCCCAT | + |
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Preference number: 6 (lower is better) Translates to: SLIPTRSQSPRA*LCGGKLHGFSH Trigger: ATGGGAGAACCCATGCAACTTGCCACCACAGAGCCAGGCCCGCGGCGACTGGCTCCTGGTGGGTATTAAAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000422022.1 ENST00000456651.1 ENST00000658577.1 |
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| CDS TCA 72 bp | GAAGGTTTGATTGAGCCTGCGGAAGGTCTCATGCTGTaGAAAGCTTCCTCAGCAGGCAACCCTGCTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: EGLIEPAEGLML*KASSAGNPALL Trigger: AAGAAGAGCAGGGTTGCCTGCTGAGGAAGCTTTTCACAGCATGAGACCTTCCGCAGGCTCAATCAAACCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456651.1 |
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| CDS TCA 72 bp | TTTCAATCAAGATGTCTTTCGGGGCCATTGAAGGTTTaGTTGAGCCTGCGGAAGGTCTCATGCTGTGAAAAG | + |
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Preference number: 6 (lower is better) Translates to: FQSRCLSGPLKV*LSLRKVSCCEK Trigger: CTTTTCACAGCATGAGACCTTCCGCAGGCTCAATCAAACCTTCAATGGCCCCGAAAGACATCTTGATTGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000456651.1 |
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