Pregenerated sensors for LINC01353 (Homo sapiens)
Ensembl gene IDs: ENSG00000231507Ensembl transcript IDs: ENST00000412772.2, ENST00000433008.1, ENST00000657300.1, ENST00000662282.1, ENST00000666545.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTCCTCCACCATCCCGACCTCAGCCTGGCCTGGAAGAAAGTGCAATaGGTGTGGAAGCACAAGACCGATGCTTCCACCCCAGCTTTGCCC | + |
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Preference number: 5 (lower is better) Translates to: LLHHPDLSLAWKKVQ*VWKHKTDASTPALP Trigger: GGGCAAAGCTGGGGTGGAAGCATCGGTCTTGTGCTTCCACACTCATTGCACTTTCTTCCAGGCCAGGCTGAGGTCGGGATGGTGGAGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657300.1 |
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| CDS GCA 90 bp | CCTGGCCTGGAAGAAAGTGCAATGAGTGTGGAAGCACAAGACCGATaGTTCCACCCCAGCTTTGCCCTGCCCTGGGCCATTCCACCCTTC | + |
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Preference number: 5 (lower is better) Translates to: PGLEESAMSVEAQDR*FHPSFALPWAIPPF Trigger: GAAGGGTGGAATGGCCCAGGGCAGGGCAAAGCTGGGGTGGAAGCATCGGTCTTGTGCTTCCACACTCATTGCACTTTCTTCCAGGCCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657300.1 |
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| CDS TCA 90 bp | TCCTGCTCTGTGAGGGCTGATGCGGTGCCATGGAGATACTTCCTGTaGCTTTGCCAGGCAAACTGGAGGCCAGGGGAAAGATCGGGAGTG | + |
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Preference number: 5 (lower is better) Translates to: SCSVRADAVPWRYFL*LCQANWRPGERSGV Trigger: CACTCCCGATCTTTCCCCTGGCCTCCAGTTTGCCTGGCAAAGTCACAGGAAGTATCTCCATGGCACCGCATCAGCCCTCACAGAGCAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000412772.2 ENST00000662282.1 ENST00000666545.1 |
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| CDS CCA 90 bp | TCACGGATTCGTAGATATGTGAGCTGGGTCATGGGGGCAGGGTCCTaGGTCCTGGCTCTAGAGTACCCTGAGAGGGAGAGACAGGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: SRIRRYVSWVMGAGS*VLALEYPERERQVL Trigger: GAGAACCTGTCTCTCCCTCTCAGGGTACTCTAGAGCCAGGACCCAGGACCCTGCCCCCATGACCCAGCTCACATATCTACGAATCCGTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657300.1 |
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| CDS GCA 90 bp | TGCAATGAGTGTGGAAGCACAAGACCGATGCTTCCACCCCAGCTTTaGCCTGCCCTGGGCCATTCCACCCTTCTGAGCCTCCATTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: CNECGSTRPMLPPQL*PALGHSTLLSLHFL Trigger: AAGGAAATGGAGGCTCAGAAGGGTGGAATGGCCCAGGGCAGGGCAAAGCTGGGGTGGAAGCATCGGTCTTGTGCTTCCACACTCATTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657300.1 |
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| CDS CCA 90 bp | GCCTCCTTCCTAGCACCGTGGGAGTATAAGCTGGCTCCTCTGCAATaGATCCGTGGCCAGTACCTCTGTTCCCTCACAGCACAGGATAAC | + |
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Preference number: 5 (lower is better) Translates to: ASFLAPWEYKLAPLQ*IRGQYLCSLTAQDN Trigger: GTTATCCTGTGCTGTGAGGGAACAGAGGTACTGGCCACGGATCCATTGCAGAGGAGCCAGCTTATACTCCCACGGTGCTAGGAAGGAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412772.2 ENST00000662282.1 |
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| CDS CCA 90 bp | CTAAGCCTCGATGTTTTCATCTGTCCCGCCTCCTTCCTAGCACCGTaGGAGTATAAGCTGGCTCCTCTGCAATGGATCCGTGGCCAGTAC | + |
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Preference number: 5 (lower is better) Translates to: LSLDVFICPASFLAP*EYKLAPLQWIRGQY Trigger: GTACTGGCCACGGATCCATTGCAGAGGAGCCAGCTTATACTCCCACGGTGCTAGGAAGGAGGCGGGACAGATGAAAACATCGAGGCTTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412772.2 ENST00000662282.1 |
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| CDS GCA 90 bp | GACACCACATGGAGAGTTAGTCGGAGTCACCAGGTGTTCCAAGTTTaGCTTTGGCGGTCTCCTGCCTCTCAGCTTTCTTCGAGGTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: DTTWRVSRSHQVFQV*LWRSPASQLSSRLL Trigger: GAGCAACCTCGAAGAAAGCTGAGAGGCAGGAGACCGCCAAAGGCAAACTTGGAACACCTGGTGACTCCGACTAACTCTCCATGTGGTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000412772.2 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS TCA 90 bp | AGACGCCTCCTCAGGGCAGGAAATATGCCTTATTCATTCATCCTGTaGTTCCAGTGCCAGGCCCAGGAAGGGCACATAGTAGGAGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: RRLLRAGNMPYSFIL*FQCQAQEGHIVGAQ Trigger: CTGAGCTCCTACTATGTGCCCTTCCTGGGCCTGGCACTGGAATCACAGGATGAATGAATAAGGCATATTTCCTGCCCTGAGGAGGCGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS CCA 90 bp | ACATGGAGAGTTAGTCGGAGTCACCAGGTGTTCCAAGTTTGCCTTTaGCGGTCTCCTGCCTCTCAGCTTTCTTCGAGGTTGCTCTGGTAC | + |
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Preference number: 5 (lower is better) Translates to: TWRVSRSHQVFQVCL*RSPASQLSSRLLWY Trigger: GTACCAGAGCAACCTCGAAGAAAGCTGAGAGGCAGGAGACCGCCAAAGGCAAACTTGGAACACCTGGTGACTCCGACTAACTCTCCATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000412772.2 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS GCA 90 bp | GTTCACAGCTCTGTTGACATTCCCTTGACCTCAGAATTCTGGAGGTaGCTTAATTCCGACTTCCCCTATAGACGCCTCCTCAGGGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: VHSSVDIPLTSEFWR*LNSDFPYRRLLRAG Trigger: TCCTGCCCTGAGGAGGCGTCTATAGGGGAAGTCGGAATTAAGGCACCTCCAGAATTCTGAGGTCAAGGGAATGTCAACAGAGCTGTGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS CCA 90 bp | TGTGCCAAATGGAAGTGTGCGTGTGGGAGAGGGCACACAGCCAGATaGCTCCTTGGGGCAAAGCCTTATTTCTACCACATAGGACTTTGT | + |
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Preference number: 5 (lower is better) Translates to: CAKWKCACGRGHTAR*LLGAKPYFYHIGLC Trigger: ACAAAGTCCTATGTGGTAGAAATAAGGCTTTGCCCCAAGGAGCCATCTGGCTGTGTGCCCTCTCCCACACGCACACTTCCATTTGGCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412772.2 ENST00000662282.1 |
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| CDS CCA 90 bp | TACCTCTGTTCCCTCACAGCACAGGATAACAATAAGTGTGCCAAATaGAAGTGTGCGTGTGGGAGAGGGCACACAGCCAGATGGCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: YLCSLTAQDNNKCAK*KCACGRGHTARWLL Trigger: AAGGAGCCATCTGGCTGTGTGCCCTCTCCCACACGCACACTTCCATTTGGCACACTTATTGTTATCCTGTGCTGTGAGGGAACAGAGGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412772.2 ENST00000662282.1 |
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| CDS GCA 90 bp | TTAATTCCGACTTCCCCTATAGACGCCTCCTCAGGGCAGGAAATATaGCTTATTCATTCATCCTGTGATTCCAGTGCCAGGCCCAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: LIPTSPIDASSGQEI*LIHSSCDSSARPRK Trigger: CTTCCTGGGCCTGGCACTGGAATCACAGGATGAATGAATAAGGCATATTTCCTGCCCTGAGGAGGCGTCTATAGGGGAAGTCGGAATTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS CCA 90 bp | TTTGGCCACCATAATTTTGTCTCTGCAGTGGGCCTTGCACAAGGCTaGGAGGAAACAGCCTCTGTAGAAATCAAGGTTTCCTGCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: FGHHNFVSAVGLAQG*EETASVEIKVSCSV Trigger: CACAGAGCAGGAAACCTTGATTTCTACAGAGGCTGTTTCCTCCCAGCCTTGTGCAAGGCCCACTGCAGAGACAAAATTATGGTGGCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000412772.2 ENST00000662282.1 ENST00000666545.1 |
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| CDS CCA 90 bp | CATTTTGTTCACAGCTCTGTTGACATTCCCTTGACCTCAGAATTCTaGAGGTGCCTTAATTCCGACTTCCCCTATAGACGCCTCCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: HFVHSSVDIPLTSEF*RCLNSDFPYRRLLR Trigger: CCTGAGGAGGCGTCTATAGGGGAAGTCGGAATTAAGGCACCTCCAGAATTCTGAGGTCAAGGGAATGTCAACAGAGCTGTGAACAAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS CCA 72 bp | TTCTGGGCCTCGAGGCTCGAGCACCAAGCGGAGGCCTaGCGCCCTCTGCCGGTGAGCTTGGGCGTGCACACC | + |
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Preference number: 6 (lower is better) Translates to: FWASRLEHQAEA*RPLPVSLGVHT Trigger: GGTGTGCACGCCCAAGCTCACCGGCAGAGGGCGCCAGGCCTCCGCTTGGTGCTCGAGCCTCGAGGCCCAGAA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666545.1 |
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| CDS GCA 72 bp | TGTGGAAGCACAAGACCGATGCTTCCACCCCAGCTTTaGCCTGCCCTGGGCCATTCCACCCTTCTGAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: CGSTRPMLPPQL*PALGHSTLLSL Trigger: GAGGCTCAGAAGGGTGGAATGGCCCAGGGCAGGGCAAAGCTGGGGTGGAAGCATCGGTCTTGTGCTTCCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657300.1 |
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| CDS TCA 72 bp | CCCGACCTCAGCCTGGCCTATCAGTTCTCCACCAGGTaGATTCTCCCCTCTCATCCTCGGCACCAGCTCCTA | + |
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Preference number: 6 (lower is better) Translates to: PDLSLAYQFSTR*ILPSHPRHQLL Trigger: TAGGAGCTGGTGCCGAGGATGAGAGGGGAGAATTCACCTGGTGGAGAACTGATAGGCCAGGCTGAGGTCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412772.2 |
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| CDS CCA 72 bp | CGTAGATATGTGAGCTGGGTCATGGGGGCAGGGTCCTaGGTCCTGGCTCTAGAGTACCCTGAGAGGGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: RRYVSWVMGAGS*VLALEYPERER Trigger: TCTCTCCCTCTCAGGGTACTCTAGAGCCAGGACCCAGGACCCTGCCCCCATGACCCAGCTCACATATCTACG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657300.1 |
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| CDS GCA 72 bp | AAGCACAAGACCGATGCTTCCACCCCAGCTTTGCCCTaGCCTGGGCCATTCCACCCTTCTGAGCCTCCATTT | + |
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Preference number: 6 (lower is better) Translates to: KHKTDASTPALP*PGPFHPSEPPF Trigger: AAATGGAGGCTCAGAAGGGTGGAATGGCCCAGGGCAGGGCAAAGCTGGGGTGGAAGCATCGGTCTTGTGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657300.1 |
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| CDS TCA 72 bp | GTGAGGGCTGATGCGGTGCCATGGAGATACTTCCTGTaGCTTTGCCAGGCAAACTGGAGGCCAGGGGAAAGA | + |
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Preference number: 6 (lower is better) Translates to: VRADAVPWRYFL*LCQANWRPGER Trigger: TCTTTCCCCTGGCCTCCAGTTTGCCTGGCAAAGTCACAGGAAGTATCTCCATGGCACCGCATCAGCCCTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000412772.2 ENST00000662282.1 ENST00000666545.1 |
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| CDS TCA 72 bp | GGGATGGAGGCCAGTCTCCATAGGGTGACATGGTGCTaGCTGGTTTTACTCAGCGATCCCAAGGCTGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: GMEASLHRVTWC*LVLLSDPKAGR Trigger: TCTCCCAGCCTTGGGATCGCTGAGTAAAACCAGTCAGCACCATGTCACCCTATGGAGACTGGCCTCCATCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433008.1 |
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| CDS CCA 72 bp | CTAGCACCGTGGGAGTATAAGCTGGCTCCTCTGCAATaGATCCGTGGCCAGTACCTCTGTTCCCTCACAGCA | + |
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Preference number: 6 (lower is better) Translates to: LAPWEYKLAPLQ*IRGQYLCSLTA Trigger: TGCTGTGAGGGAACAGAGGTACTGGCCACGGATCCATTGCAGAGGAGCCAGCTTATACTCCCACGGTGCTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412772.2 ENST00000662282.1 |
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| CDS TCA 72 bp | CTGGAGGCCAGGGGAAAGATCGGGAGTGTGAAGTCCTaGCTTCTCAGCTACTCAGAAACCCCTCTAAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: LEARGKIGSVKS*LLSYSETPLSL Trigger: GAGGCTTAGAGGGGTTTCTGAGTAGCTGAGAAGTCAGGACTTCACACTCCCGATCTTTCCCCTGGCCTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000412772.2 ENST00000662282.1 ENST00000666545.1 |
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| CDS GCA 72 bp | GAAGAAAGTGCAATGAGTGTGGAAGCACAAGACCGATaGTTCCACCCCAGCTTTGCCCTGCCCTGGGCCATT | + |
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Preference number: 6 (lower is better) Translates to: EESAMSVEAQDR*FHPSFALPWAI Trigger: AATGGCCCAGGGCAGGGCAAAGCTGGGGTGGAAGCATCGGTCTTGTGCTTCCACACTCATTGCACTTTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657300.1 |
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| CDS TCA 72 bp | AGCAAATCCCAGGGATGGAGGCCAGTCTCCATAGGGTaGCATGGTGCTGACTGGTTTTACTCAGCGATCCCA | + |
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Preference number: 6 (lower is better) Translates to: SKSQGWRPVSIG*HGADWFYSAIP Trigger: TGGGATCGCTGAGTAAAACCAGTCAGCACCATGTCACCCTATGGAGACTGGCCTCCATCCCTGGGATTTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433008.1 |
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| CDS GCA 72 bp | TCACCAGGTGTTCCAAGTTTGCCTTTGGCGGTCTCCTaGCTCTCAGCTTTCTTCGAGGTTGCTCTGGTACCT | + |
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Preference number: 6 (lower is better) Translates to: SPGVPSLPLAVS*LSAFFEVALVP Trigger: AGGTACCAGAGCAACCTCGAAGAAAGCTGAGAGGCAGGAGACCGCCAAAGGCAAACTTGGAACACCTGGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000412772.2 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS CCA 72 bp | TGCGTGTGGGAGAGGGCACACAGCCAGATGGCTCCTTaGGGCAAAGCCTTATTTCTACCACATAGGACTTTG | + |
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Preference number: 6 (lower is better) Translates to: CVWERAHSQMAP*GKALFLPHRTL Trigger: CAAAGTCCTATGTGGTAGAAATAAGGCTTTGCCCCAAGGAGCCATCTGGCTGTGTGCCCTCTCCCACACGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412772.2 ENST00000662282.1 |
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| CDS CCA 72 bp | GATGTTTTCATCTGTCCCGCCTCCTTCCTAGCACCGTaGGAGTATAAGCTGGCTCCTCTGCAATGGATCCGT | + |
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Preference number: 6 (lower is better) Translates to: DVFICPASFLAP*EYKLAPLQWIR Trigger: ACGGATCCATTGCAGAGGAGCCAGCTTATACTCCCACGGTGCTAGGAAGGAGGCGGGACAGATGAAAACATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412772.2 ENST00000662282.1 |
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| CDS CCA 72 bp | GTTAGTCGGAGTCACCAGGTGTTCCAAGTTTGCCTTTaGCGGTCTCCTGCCTCTCAGCTTTCTTCGAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: VSRSHQVFQVCL*RSPASQLSSRL Trigger: CAACCTCGAAGAAAGCTGAGAGGCAGGAGACCGCCAAAGGCAAACTTGGAACACCTGGTGACTCCGACTAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000412772.2 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS CAA 72 bp | TGTGGCCTTGGCATTCACACTTTGGCCACCATAATTTaGTCTCTGCAGTGGGCCTTGCACAAGGCTGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: CGLGIHTLATII*SLQWALHKAGR Trigger: CCTCCCAGCCTTGTGCAAGGCCCACTGCAGAGACAAAATTATGGTGGCCAAAGTGTGAATGCCAAGGCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000412772.2 ENST00000662282.1 ENST00000666545.1 |
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| CDS TCA 72 bp | CTCAGGGCAGGAAATATGCCTTATTCATTCATCCTGTaGTTCCAGTGCCAGGCCCAGGAAGGGCACATAGTA | + |
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Preference number: 6 (lower is better) Translates to: LRAGNMPYSFIL*FQCQAQEGHIV Trigger: TACTATGTGCCCTTCCTGGGCCTGGCACTGGAATCACAGGATGAATGAATAAGGCATATTTCCTGCCCTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS GCA 72 bp | ACTTCCCCTATAGACGCCTCCTCAGGGCAGGAAATATaGCTTATTCATTCATCCTGTGATTCCAGTGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: TSPIDASSGQEI*LIHSSCDSSAR Trigger: CCTGGCACTGGAATCACAGGATGAATGAATAAGGCATATTTCCTGCCCTGAGGAGGCGTCTATAGGGGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS GCA 72 bp | TCTGTTGACATTCCCTTGACCTCAGAATTCTGGAGGTaGCTTAATTCCGACTTCCCCTATAGACGCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: SVDIPLTSEFWR*LNSDFPYRRLL Trigger: GAGGAGGCGTCTATAGGGGAAGTCGGAATTAAGGCACCTCCAGAATTCTGAGGTCAAGGGAATGTCAACAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS CCA 72 bp | CATAATTTTGTCTCTGCAGTGGGCCTTGCACAAGGCTaGGAGGAAACAGCCTCTGTAGAAATCAAGGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: HNFVSAVGLAQG*EETASVEIKVS Trigger: GGAAACCTTGATTTCTACAGAGGCTGTTTCCTCCCAGCCTTGTGCAAGGCCCACTGCAGAGACAAAATTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000412772.2 ENST00000662282.1 ENST00000666545.1 |
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| CDS CAA 90 bp | TTTCATGGCTTTGGGCATTTTGTTCACAGCTCTGTTGACATTCCCTaGACCTCAGAATTCTGGAGGTGCCTTAATTCCGACTTCCCCTAT | + |
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Preference number: 6 (lower is better) Translates to: FHGFGHFVHSSVDIP*TSEFWRCLNSDFPY Trigger: ATAGGGGAAGTCGGAATTAAGGCACCTCCAGAATTCTGAGGTCAAGGGAATGTCAACAGAGCTGTGAACAAAATGCCCAAAGCCATGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS TCA 72 bp | TTTTCATGGCTTTGGGCATTTTGTTCACAGCTCTGTTaGCATTCCCTTGACCTCAGAATTCTGGAGGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: FSWLWAFCSQLC*HSLDLRILEVP Trigger: AGGCACCTCCAGAATTCTGAGGTCAAGGGAATGTCAACAGAGCTGTGAACAAAATGCCCAAAGCCATGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS CAA 72 bp | TTTGGGCATTTTGTTCACAGCTCTGTTGACATTCCCTaGACCTCAGAATTCTGGAGGTGCCTTAATTCCGAC | + |
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Preference number: 6 (lower is better) Translates to: FGHFVHSSVDIP*TSEFWRCLNSD Trigger: GTCGGAATTAAGGCACCTCCAGAATTCTGAGGTCAAGGGAATGTCAACAGAGCTGTGAACAAAATGCCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000412772.2 ENST00000433008.1 ENST00000657300.1 ENST00000662282.1 ENST00000666545.1 |
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| CDS CAA 72 bp | AGCATTCTGCACATATGTTCACTCTTTCCACAATATTaGCACACCCAGCGCATAGTAAACACATTAAATAGT | + |
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Preference number: 6 (lower is better) Translates to: SILHICSLFPQY*HTQRIVNTLNS Trigger: ACTATTTAATGTGTTTACTATGCGCTGGGTGTGCAAATATTGTGGAAAGAGTGAACATATGTGCAGAATGCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412772.2 ENST00000657300.1 |
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| CDS CAA 90 bp | CGTTTATTAAGCATTCTGCACATATGTTCACTCTTTCCACAATATTaGCACACCCAGCGCATAGTAAACACATTAAATAGTGGCTTTTAT | + |
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Preference number: 6 (lower is better) Translates to: RLLSILHICSLFPQY*HTQRIVNTLNSGFY Trigger: ATAAAAGCCACTATTTAATGTGTTTACTATGCGCTGGGTGTGCAAATATTGTGGAAAGAGTGAACATATGTGCAGAATGCTTAATAAACG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412772.2 ENST00000657300.1 |
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