Pregenerated sensors for LINC01352 (Homo sapiens)
Ensembl gene IDs: ENSG00000238078Ensembl transcript IDs: ENST00000431347.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AAGCTAGAGATGGGGCACAGAGACCTGCCCTTGCTTTCCCAACCCTaGACGACACACAGTCAGTGGGTTGTTCACTCAGTTGTCAGCCTA | + |
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Preference number: 5 (lower is better) Translates to: KLEMGHRDLPLLSQP*TTHSQWVVHSVVSL Trigger: TAGGCTGACAACTGAGTGAACAACCCACTGACTGTGTGTCGTTCAGGGTTGGGAAAGCAAGGGCAGGTCTCTGTGCCCCATCTCTAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS TCA 90 bp | AGGAGGCCTGAATCTTCTGATCCATCCAATCTCTCATTTTACACTTaGAGAAACTTCCTTCCTGGAGCTCAGGCTGTTATCCTCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: RRPESSDPSNLSFYT*RNFLPGAQAVILQG Trigger: GCCCTGGAGGATAACAGCCTGAGCTCCAGGAAGGAAGTTTCTTCAAGTGTAAAATGAGAGATTGGATGGATCAGAAGATTCAGGCCTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS TCA 90 bp | ATTTCTTGCCAGCATGTTACATGCCATAATGGAAGTATACACAGGTaGCCATCAGTTCTCCTTGATCTTATGCCTTTGGATTCAGACTTA | + |
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Preference number: 5 (lower is better) Translates to: ISCQHVTCHNGSIHR*PSVLLDLMPLDSDL Trigger: TAAGTCTGAATCCAAAGGCATAAGATCAAGGAGAACTGATGGTCACCTGTGTATACTTCCATTATGGCATGTAACATGCTGGCAAGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CCA 72 bp | CTCAGGCTGTTATCCTCCAGGGCTCTGCTGATTCCCTaGGCACCCCGCACTCTGCTTCACAGCACTCATCAC | + |
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Preference number: 6 (lower is better) Translates to: LRLLSSRALLIP*APRTLLHSTHH Trigger: GTGATGAGTGCTGTGAAGCAGAGTGCGGGGTGCCCAGGGAATCAGCAGAGCCCTGGAGGATAACAGCCTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CCA 72 bp | ACACAGATCCCCTTCGATCAAGCACGAGCCCTGAGTTaGCCATGGTCCTACCTGAATTGGCTCCTGCCAAGT | + |
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Preference number: 6 (lower is better) Translates to: TQIPFDQARALS*PWSYLNWLLPS Trigger: ACTTGGCAGGAGCCAATTCAGGTAGGACCATGGCCAACTCAGGGCTCGTGCTTGATCGAAGGGGATCTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CAA 72 bp | AACACAGATCCCCTTCGATCAAGCACGAGCCCTGAGTaGGCCATGGTCCTACCTGAATTGGCTCCTGCCAAG | + |
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Preference number: 6 (lower is better) Translates to: NTDPLRSSTSPE*AMVLPELAPAK Trigger: CTTGGCAGGAGCCAATTCAGGTAGGACCATGGCCAACTCAGGGCTCGTGCTTGATCGAAGGGGATCTGTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS TCA 72 bp | ATGGGGCACAGAGACCTGCCCTTGCTTTCCCAACCCTaGACGACACACAGTCAGTGGGTTGTTCACTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: MGHRDLPLLSQP*TTHSQWVVHSV Trigger: AACTGAGTGAACAACCCACTGACTGTGTGTCGTTCAGGGTTGGGAAAGCAAGGGCAGGTCTCTGTGCCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CCA 72 bp | GCACGAGCCCTGAGTTGGCCATGGTCCTACCTGAATTaGCTCCTGCCAAGTTTATCTCTGCTGATGAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: ARALSWPWSYLN*LLPSLSLLMRK Trigger: CTTCCTCATCAGCAGAGATAAACTTGGCAGGAGCCAATTCAGGTAGGACCATGGCCAACTCAGGGCTCGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CCA 72 bp | ATCCCCTTCGATCAAGCACGAGCCCTGAGTTGGCCATaGTCCTACCTGAATTGGCTCCTGCCAAGTTTATCT | + |
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Preference number: 6 (lower is better) Translates to: IPFDQARALSWP*SYLNWLLPSLS Trigger: AGATAAACTTGGCAGGAGCCAATTCAGGTAGGACCATGGCCAACTCAGGGCTCGTGCTTGATCGAAGGGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CAA 72 bp | AGCACGAGCCCTGAGTTGGCCATGGTCCTACCTGAATaGGCTCCTGCCAAGTTTATCTCTGCTGATGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: STSPELAMVLPE*APAKFISADEE Trigger: TTCCTCATCAGCAGAGATAAACTTGGCAGGAGCCAATTCAGGTAGGACCATGGCCAACTCAGGGCTCGTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CAA 90 bp | CTTCGATCAAGCACGAGCCCTGAGTTGGCCATGGTCCTACCTGAATaGGCTCCTGCCAAGTTTATCTCTGCTGATGAGGAAGCTTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: LRSSTSPELAMVLPE*APAKFISADEEALP Trigger: AGGCAAAGCTTCCTCATCAGCAGAGATAAACTTGGCAGGAGCCAATTCAGGTAGGACCATGGCCAACTCAGGGCTCGTGCTTGATCGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CAA 90 bp | ATGCTGACTAACACAGATCCCCTTCGATCAAGCACGAGCCCTGAGTaGGCCATGGTCCTACCTGAATTGGCTCCTGCCAAGTTTATCTCT | + |
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Preference number: 6 (lower is better) Translates to: MLTNTDPLRSSTSPE*AMVLPELAPAKFIS Trigger: AGAGATAAACTTGGCAGGAGCCAATTCAGGTAGGACCATGGCCAACTCAGGGCTCGTGCTTGATCGAAGGGGATCTGTGTTAGTCAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CCA 72 bp | TGCTGGCTGAATAGCCTGTGTGTTGGGGTTCACCCATaGGGATTTTCAAGGAGGCCTGAATCTTCTGATCCA | + |
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Preference number: 6 (lower is better) Translates to: CWLNSLCVGVHP*GFSRRPESSDP Trigger: TGGATCAGAAGATTCAGGCCTCCTTGAAAATCCCCATGGGTGAACCCCAACACACAGGCTATTCAGCCAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CAA 72 bp | ATGCCTTTGGATTCAGACTTAATTACGTCACTGGCTTaGCTGTTTCTCCAGCTTGCAGACAGGAGGTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: MPLDSDLITSLA*LFLQLADRRWW Trigger: CCACCACCTCCTGTCTGCAAGCTGGAGAAACAGCAAAGCCAGTGACGTAATTAAGTCTGAATCCAAAGGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CAA 90 bp | CCTGAATTGGCTCCTGCCAAGTTTATCTCTGCTGATGAGGAAGCTTaGCCTCTAGTTTCTCTCCTGAGAAGGGAGAGTTTCAATCAACCT | + |
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Preference number: 6 (lower is better) Translates to: PELAPAKFISADEEA*PLVSLLRRESFNQP Trigger: AGGTTGATTGAAACTCTCCCTTCTCAGGAGAGAAACTAGAGGCAAAGCTTCCTCATCAGCAGAGATAAACTTGGCAGGAGCCAATTCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CAA 90 bp | TCCAGCTTGCAGACAGGAGGTGGTGGGTCTTCTAGGACTCCACAATaGCATGAGCCAACTCCCATAATAAATCTCTTTACATATCTATCC | + |
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Preference number: 6 (lower is better) Translates to: SSLQTGGGGSSRTPQ*HEPTPIINLFTYLS Trigger: GGATAGATATGTAAAGAGATTTATTATGGGAGTTGGCTCATGCAATTGTGGAGTCCTAGAAGACCCACCACCTCCTGTCTGCAAGCTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS CAA 72 bp | CAGACAGGAGGTGGTGGGTCTTCTAGGACTCCACAATaGCATGAGCCAACTCCCATAATAAATCTCTTTACA | + |
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Preference number: 6 (lower is better) Translates to: QTGGGGSSRTPQ*HEPTPIINLFT Trigger: TGTAAAGAGATTTATTATGGGAGTTGGCTCATGCAATTGTGGAGTCCTAGAAGACCCACCACCTCCTGTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS TCA 72 bp | CAGCATGTTACATGCCATAATGGAAGTATACACAGGTaGCCATCAGTTCTCCTTGATCTTATGCCTTTGGAT | + |
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Preference number: 6 (lower is better) Translates to: QHVTCHNGSIHR*PSVLLDLMPLD Trigger: ATCCAAAGGCATAAGATCAAGGAGAACTGATGGTCACCTGTGTATACTTCCATTATGGCATGTAACATGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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| CDS GCA 72 bp | GCAGCTGAGAAGACACAACCCAATGAATCAATTTCTTaGCAGCATGTTACATGCCATAATGGAAGTATACAC | + |
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Preference number: 6 (lower is better) Translates to: AAEKTQPNESIS*QHVTCHNGSIH Trigger: GTGTATACTTCCATTATGGCATGTAACATGCTGGCAAGAAATTGATTCATTGGGTTGTGTCTTCTCAGCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431347.1 |
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