Pregenerated sensors for LINC01350 (Homo sapiens)
Ensembl gene IDs: ENSG00000228309Ensembl transcript IDs: ENST00000436955.1, ENST00000439633.7, ENST00000608417.6, ENST00000609066.6, ENST00000654367.1, ENST00000654596.1, ENST00000655092.1, ENST00000655693.1, ENST00000655976.1, ENST00000657435.1, ENST00000662341.1, ENST00000665129.1, ENST00000665770.1, ENST00000665999.1, ENST00000666202.1, ENST00000667194.1, ENST00000667796.1, ENST00000667960.1, ENST00000669189.1, ENST00000669266.1, ENST00000670065.1, ENST00000670075.1
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCTGCAGCTGCTGAGAGTCATTTAGGATGCTGGCCACCTGGTACCTaGTCCCCCATTGTGCCTTATAGTCCTGAGTTTTGGGATATCCCT | + |
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Preference number: 5 (lower is better) Translates to: SAAAESHLGCWPPGT*SPIVPYSPEFWDIP Trigger: AGGGATATCCCAAAACTCAGGACTATAAGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 19 transcripts: ENST00000436955.1 ENST00000439633.7 ENST00000609066.6 ENST00000654367.1 ENST00000654596.1 ENST00000655092.1 ENST00000655693.1 ENST00000655976.1 ENST00000657435.1 ENST00000665770.1 ENST00000665999.1 ENST00000666202.1 ENST00000667194.1 ENST00000667796.1 ENST00000667960.1 ENST00000669189.1 ENST00000669266.1 ENST00000670065.1 ENST00000670075.1 |
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| CDS CCA 90 bp | AGAGGCCAGCCTGCCTTTTCTTGGAGGTGGGCCAAGGAATGGTTATaGGAGCGTGAAAGCTCTTCTCACAATTCTAGTTCTTCCCCAGTG | + |
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Preference number: 5 (lower is better) Translates to: RGQPAFSWRWAKEWL*ERESSSHNSSSSPV Trigger: CACTGGGGAAGAACTAGAATTGTGAGAAGAGCTTTCACGCTCCCATAACCATTCCTTGGCCCACCTCCAAGAAAAGGCAGGCTGGCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000439633.7 ENST00000609066.6 ENST00000665770.1 ENST00000667796.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS CCA 90 bp | TGCAAGCACAGACAACACCTAAACAGAGGCCAGCCTGCCTTTTCTTaGAGGTGGGCCAAGGAATGGTTATGGGAGCGTGAAAGCTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: CKHRQHLNRGQPAFS*RWAKEWLWERESSS Trigger: AGAAGAGCTTTCACGCTCCCATAACCATTCCTTGGCCCACCTCCAAGAAAAGGCAGGCTGGCCTCTGTTTAGGTGTTGTCTGTGCTTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000439633.7 ENST00000609066.6 ENST00000665770.1 ENST00000667796.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS TCA 90 bp | ACGTCAGCCTATATATCCATCCATTATGGTCTTCTCTGCAGCTGCTaGGAGTCATTTAGGATGCTGGCCACCTGGTACCTGCTCCCCCAT | + |
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Preference number: 5 (lower is better) Translates to: TSAYISIHYGLLCSC*ESFRMLATWYLLPH Trigger: ATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAAGACCATAATGGATGGATATATAGGCTGACGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000436955.1 ENST00000654596.1 ENST00000655092.1 ENST00000670065.1 |
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| CDS TCA 90 bp | GATCACTGGGGCATGACCAGCCTTTCAAGAAGCCTTGGCCTTGCCTaGAAGTACTATAGCAGCAGCATCTGTGCAAATGTGGGTGGTCTT | + |
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Preference number: 5 (lower is better) Translates to: DHWGMTSLSRSLGLA*KYYSSSICANVGGL Trigger: AAGACCACCCACATTTGCACAGATGCTGCTGCTATAGTACTTTCAGGCAAGGCCAAGGCTTCTTGAAAGGCTGGTCATGCCCCAGTGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000655976.1 ENST00000667796.1 |
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| CDS CCA 90 bp | CACAGACAACACCTAAACAGAGGCCAGCCTGCCTTTTCTTGGAGGTaGGCCAAGGAATGGTTATGGGAGCGTGAAAGCTCTTCTCACAAT | + |
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Preference number: 5 (lower is better) Translates to: HRQHLNRGQPAFSWR*AKEWLWERESSSHN Trigger: ATTGTGAGAAGAGCTTTCACGCTCCCATAACCATTCCTTGGCCCACCTCCAAGAAAAGGCAGGCTGGCCTCTGTTTAGGTGTTGTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000439633.7 ENST00000609066.6 ENST00000665770.1 ENST00000667796.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS GCA 90 bp | TCTTTTATGAGAATGTTCTCTGCAGCTGCTGAGAGTCATTTAGGATaGTGGCCACCTGGTACCTGCTCCCCCATTGTGCCTTATAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: SFMRMFSAAAESHLG*WPPGTCSPIVPYSP Trigger: AGGACTATAAGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAACATTCTCATAAAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000439633.7 ENST00000655693.1 ENST00000665770.1 ENST00000669266.1 ENST00000670075.1 |
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| CDS GCA 90 bp | TGCTATTCCAAACCTATTAAAGATGTTCCCGCCCTGCAGGTGGCCTaGTACATGGTCCTTCAGAAACCAAACTCCTTCCATATTACAGCC | + |
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Preference number: 5 (lower is better) Translates to: CYSKPIKDVPALQVA*YMVLQKPNSFHITA Trigger: GGCTGTAATATGGAAGGAGTTTGGTTTCTGAAGGACCATGTAGCAGGCCACCTGCAGGGCGGGAACATCTTTAATAGGTTTGGAATAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 13 transcripts: ENST00000439633.7 ENST00000608417.6 ENST00000609066.6 ENST00000655092.1 ENST00000655976.1 ENST00000657435.1 ENST00000665129.1 ENST00000665770.1 ENST00000665999.1 ENST00000667194.1 ENST00000667796.1 ENST00000669266.1 ENST00000670075.1 |
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| CDS TCA 90 bp | CTGAGTTTTGGGATATCCCTGAGTTCTTCATTGATCACTGGGGCATaGCCAGCCTTTCAAGAAGCCTTGGCCTTGCCTGAAAGTACTATA | + |
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Preference number: 5 (lower is better) Translates to: LSFGISLSSSLITGA*PAFQEALALPESTI Trigger: TATAGTACTTTCAGGCAAGGCCAAGGCTTCTTGAAAGGCTGGTCATGCCCCAGTGATCAATGAAGAACTCAGGGATATCCCAAAACTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 9 transcripts: ENST00000436955.1 ENST00000609066.6 ENST00000654367.1 ENST00000655976.1 ENST00000667194.1 ENST00000667796.1 ENST00000667960.1 ENST00000669189.1 ENST00000670075.1 |
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| CDS GCA 90 bp | TTATGTCCGGAACCCATTGATAATTCCTCATGTCAACGTTGGGAATaGAAGCACAGACAACACCTAAACAGAGGCCAGCCTGCCTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: LCPEPIDNSSCQRWE*KHRQHLNRGQPAFS Trigger: AGAAAAGGCAGGCTGGCCTCTGTTTAGGTGTTGTCTGTGCTTGCATTCCCAACGTTGACATGAGGAATTATCAATGGGTTCCGGACATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000439633.7 ENST00000609066.6 ENST00000665770.1 ENST00000667796.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS TCA 90 bp | CATGGAGTAATGGAAGGGCCCCAGCATTCTATACCTCAGGATGACTaGTTCTCTTTTATGAGAATGTTCTCTGCAGCTGCTGAGAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: HGVMEGPQHSIPQDD*FSFMRMFSAAAESH Trigger: ATGACTCTCAGCAGCTGCAGAGAACATTCTCATAAAAGAGAATCAGTCATCCTGAGGTATAGAATGCTGGGGCCCTTCCATTACTCCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000439633.7 ENST00000665770.1 |
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| CDS TCA 90 bp | TGCAAGAAGGCTAAAGGCTTTGATATGGTAATGCCTCTTTCCATATaGTCCAGCAATCTTGCTCCTTGGTATTTGCCCAAAGGAGTCAAA | + |
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Preference number: 5 (lower is better) Translates to: CKKAKGFDMVMPLSI*SSNLAPWYLPKGVK Trigger: TTTGACTCCTTTGGGCAAATACCAAGGAGCAAGATTGCTGGATCATATGGAAAGAGGCATTACCATATCAAAGCCTTTAGCCTTCTTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000436955.1 ENST00000666202.1 |
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| CDS TCA 90 bp | GGTATTAAACTCTGTCTCTGCTGTATCCCAAGTGTCTCAGTTTATTaGCTCACTGCACATCGGGCAAATGAACCTTATAGTCCTGAGTTT | + |
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Preference number: 5 (lower is better) Translates to: GIKLCLCCIPSVSVY*LTAHRANEPYSPEF Trigger: AAACTCAGGACTATAAGGTTCATTTGCCCGATGTGCAGTGAGTCAATAAACTGAGACACTTGGGATACAGCAGAGACAGAGTTTAATACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662341.1 |
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| CDS GCA 90 bp | GAGAATTCAGCCTTTTCTGTGGCACCTCTGCAGTTTGAAAATCTCTaGTTCGTTTGGTCTGAGGAGAGAATTGCATCTTTGTTTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: ENSAFSVAPLQFENL*FVWSEERIASLFLI Trigger: AATGAGAAACAAAGATGCAATTCTCTCCTCAGACCAAACGAAGCAGAGATTTTCAAACTGCAGAGGTGCCACAGAAAAGGCTGAATTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000655976.1 ENST00000667796.1 |
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| CDS CCA 90 bp | TTGGCCTTGCCTGAAAGTACTATAGCAGCAGCATCTGTGCAAATGTaGGTGGTCTTTATGATGTCAGAAGACAAGGTGAATATTCTATTT | + |
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Preference number: 5 (lower is better) Translates to: LALPESTIAAASVQM*VVFMMSEDKVNILF Trigger: AAATAGAATATTCACCTTGTCTTCTGACATCATAAAGACCACCCACATTTGCACAGATGCTGCTGCTATAGTACTTTCAGGCAAGGCCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000655976.1 ENST00000667796.1 |
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| CDS TCA 90 bp | GCAAAATATAGATCTGGTGAATATCACCAAACAACTGAAGCCAACTaGTATACGTCAGCCTATATATCCATCCATTATGGTCTTCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: AKYRSGEYHQTTEAN*YTSAYISIHYGLLC Trigger: GCAGAGAAGACCATAATGGATGGATATATAGGCTGACGTATATCAGTTGGCTTCAGTTGTTTGGTGATATTCACCAGATCTATATTTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000436955.1 ENST00000654596.1 ENST00000655092.1 ENST00000670065.1 |
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| CDS GCA 72 bp | CGTAGGTTCTCTGCAGCTGCTGAGAGTCATTTAGGATaGTGGCCACCTGGTACCTGCTCCCCCATTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: RRFSAAAESHLG*WPPGTCSPIVP Trigger: AGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAACCTACG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000665999.1 |
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| CDS GCA 72 bp | ATGGTCTTCTCTGCAGCTGCTGAGAGTCATTTAGGATaGTGGCCACCTGGTACCTGCTCCCCCATTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: MVFSAAAESHLG*WPPGTCSPIVP Trigger: AGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAAGACCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000436955.1 ENST00000654596.1 ENST00000655092.1 ENST00000670065.1 |
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| CDS GCA 72 bp | GTTGAGTTCTCTGCAGCTGCTGAGAGTCATTTAGGATaGTGGCCACCTGGTACCTGCTCCCCCATTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: VEFSAAAESHLG*WPPGTCSPIVP Trigger: AGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAACTCAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657435.1 |
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| CDS TCA 72 bp | GAAGGGCCCCAGCATTCTATACTTCTCTGCAGCTGCTaGGAGTCATTTAGGATGCTGGCCACCTGGTACCTG | + |
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Preference number: 6 (lower is better) Translates to: EGPQHSILLCSC*ESFRMLATWYL Trigger: CAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAAGTATAGAATGCTGGGGCCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000609066.6 ENST00000667796.1 ENST00000667960.1 |
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| CDS GCA 72 bp | AGAATGTTCTCTGCAGCTGCTGAGAGTCATTTAGGATaGTGGCCACCTGGTACCTGCTCCCCCATTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: RMFSAAAESHLG*WPPGTCSPIVP Trigger: AGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAACATTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000439633.7 ENST00000655693.1 ENST00000665770.1 ENST00000669266.1 ENST00000670075.1 |
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| CDS GCA 72 bp | CTATACTTCTCTGCAGCTGCTGAGAGTCATTTAGGATaGTGGCCACCTGGTACCTGCTCCCCCATTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: LYFSAAAESHLG*WPPGTCSPIVP Trigger: AGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAAGTATAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000609066.6 ENST00000667796.1 ENST00000667960.1 |
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| CDS GCA 72 bp | TCTTTCTTCTCTGCAGCTGCTGAGAGTCATTTAGGATaGTGGCCACCTGGTACCTGCTCCCCCATTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: SFFSAAAESHLG*WPPGTCSPIVP Trigger: AGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAAGAAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000662341.1 ENST00000669189.1 |
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| CDS CCA 72 bp | GTCTTCTCTGCAGCTGCTGAGAGTCATTTAGGATGCTaGCCACCTGGTACCTGCTCCCCCATTGTGCCTTAT | + |
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Preference number: 6 (lower is better) Translates to: VFSAAAESHLGC*PPGTCSPIVPY Trigger: ATAAGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000436955.1 ENST00000654596.1 ENST00000655092.1 ENST00000670065.1 |
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| CDS CCA 72 bp | CACCTAAACAGAGGCCAGCCTGCCTTTTCTTGGAGGTaGGCCAAGGAATGGTTATGGGAGCGTGAAAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: HLNRGQPAFSWR*AKEWLWERESS Trigger: AGAGCTTTCACGCTCCCATAACCATTCCTTGGCCCACCTCCAAGAAAAGGCAGGCTGGCCTCTGTTTAGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000439633.7 ENST00000609066.6 ENST00000665770.1 ENST00000667796.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS CCA 72 bp | TTCTTCTCTGCAGCTGCTGAGAGTCATTTAGGATGCTaGCCACCTGGTACCTGCTCCCCCATTGTGCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: FFSAAAESHLGC*PPGTCSPIVPL Trigger: AAGAGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000662341.1 |
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| CDS GCA 72 bp | GCTGAGAGTCATTTAGGATGCTGGCCACCTGGTACCTaGTCCCCCATTGTGCCTTATAGTCCTGAGTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: AESHLGCWPPGT*SPIVPYSPEFW Trigger: CCAAAACTCAGGACTATAAGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 19 transcripts: ENST00000436955.1 ENST00000439633.7 ENST00000609066.6 ENST00000654367.1 ENST00000654596.1 ENST00000655092.1 ENST00000655693.1 ENST00000655976.1 ENST00000657435.1 ENST00000665770.1 ENST00000665999.1 ENST00000666202.1 ENST00000667194.1 ENST00000667796.1 ENST00000667960.1 ENST00000669189.1 ENST00000669266.1 ENST00000670065.1 ENST00000670075.1 |
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| CDS GCA 72 bp | TTTACATTCTCTGCAGCTGCTGAGAGTCATTTAGGATaGTGGCCACCTGGTACCTGCTCCCCCATTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: FTFSAAAESHLG*WPPGTCSPIVP Trigger: AGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAATGTAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000608417.6 ENST00000654367.1 ENST00000655976.1 ENST00000665129.1 ENST00000667194.1 |
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| CDS GCA 72 bp | ACAAAATTCTCTGCAGCTGCTGAGAGTCATTTAGGATaGTGGCCACCTGGTACCTGCTCCCCCATTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: TKFSAAAESHLG*WPPGTCSPIVP Trigger: AGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAATTTTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666202.1 |
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| CDS CCA 72 bp | ATGTTCTCTGCAGCTGCTGAGAGTCATTTAGGATGCTaGCCACCTGGTACCTGCTCCCCCATTGTGCCTTAT | + |
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Preference number: 6 (lower is better) Translates to: MFSAAAESHLGC*PPGTCSPIVPY Trigger: ATAAGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAACAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000439633.7 ENST00000655693.1 ENST00000665770.1 ENST00000669266.1 ENST00000670075.1 |
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| CDS CCA 72 bp | GGCCAGCCTGCCTTTTCTTGGAGGTGGGCCAAGGAATaGTTATGGGAGCGTGAAAGCTCTTCTCACAATTCT | + |
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Preference number: 6 (lower is better) Translates to: GQPAFSWRWAKE*LWERESSSHNS Trigger: AGAATTGTGAGAAGAGCTTTCACGCTCCCATAACCATTCCTTGGCCCACCTCCAAGAAAAGGCAGGCTGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000439633.7 ENST00000609066.6 ENST00000665770.1 ENST00000667796.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS CCA 72 bp | AGACAACACCTAAACAGAGGCCAGCCTGCCTTTTCTTaGAGGTGGGCCAAGGAATGGTTATGGGAGCGTGAA | + |
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Preference number: 6 (lower is better) Translates to: RQHLNRGQPAFS*RWAKEWLWERE Trigger: TTCACGCTCCCATAACCATTCCTTGGCCCACCTCCAAGAAAAGGCAGGCTGGCCTCTGTTTAGGTGTTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000439633.7 ENST00000609066.6 ENST00000665770.1 ENST00000667796.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS CCA 72 bp | TACTTCTCTGCAGCTGCTGAGAGTCATTTAGGATGCTaGCCACCTGGTACCTGCTCCCCCATTGTGCCTTAT | + |
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Preference number: 6 (lower is better) Translates to: YFSAAAESHLGC*PPGTCSPIVPY Trigger: ATAAGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAAGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000609066.6 ENST00000667796.1 ENST00000667960.1 |
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| CDS CCA 72 bp | TTCTTCTCTGCAGCTGCTGAGAGTCATTTAGGATGCTaGCCACCTGGTACCTGCTCCCCCATTGTGCCTTAT | + |
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Preference number: 6 (lower is better) Translates to: FFSAAAESHLGC*PPGTCSPIVPY Trigger: ATAAGGCACAATGGGGGAGCAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669189.1 |
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| CDS TCA 72 bp | GGGATATCCCTGAGTTCTTCATTGATCACTGGGGCATaGCCAGCCTTTCAAGAAGCCTTGGCCTTGCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: GISLSSSLITGA*PAFQEALALPE Trigger: TTCAGGCAAGGCCAAGGCTTCTTGAAAGGCTGGTCATGCCCCAGTGATCAATGAAGAACTCAGGGATATCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 12 transcripts: ENST00000436955.1 ENST00000609066.6 ENST00000654367.1 ENST00000655976.1 ENST00000665770.1 ENST00000665999.1 ENST00000667194.1 ENST00000667796.1 ENST00000667960.1 ENST00000669189.1 ENST00000669266.1 ENST00000670075.1 |
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| CDS TCA 72 bp | CGGCATTCTGGAAAAGACAAAATTCTCTGCAGCTGCTaGGAGTCATTTAGGATGCTGGCCACCTGGTACCTG | + |
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Preference number: 6 (lower is better) Translates to: RHSGKDKILCSC*ESFRMLATWYL Trigger: CAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAATTTTGTCTTTTCCAGAATGCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666202.1 |
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| CDS TCA 72 bp | GGCATGACCAGCCTTTCAAGAAGCCTTGGCCTTGCCTaGAAGTACTATAGCAGCAGCATCTGTGCAAATGTG | + |
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Preference number: 6 (lower is better) Translates to: GMTSLSRSLGLA*KYYSSSICANV Trigger: CACATTTGCACAGATGCTGCTGCTATAGTACTTTCAGGCAAGGCCAAGGCTTCTTGAAAGGCTGGTCATGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000655976.1 ENST00000667194.1 ENST00000667796.1 ENST00000669189.1 |
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| CDS GCA 72 bp | AAACCTATTAAAGATGTTCCCGCCCTGCAGGTGGCCTaGTACATGGTCCTTCAGAAACCAAACTCCTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: KPIKDVPALQVA*YMVLQKPNSFH Trigger: ATGGAAGGAGTTTGGTTTCTGAAGGACCATGTAGCAGGCCACCTGCAGGGCGGGAACATCTTTAATAGGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 13 transcripts: ENST00000439633.7 ENST00000608417.6 ENST00000609066.6 ENST00000655092.1 ENST00000655976.1 ENST00000657435.1 ENST00000665129.1 ENST00000665770.1 ENST00000665999.1 ENST00000667194.1 ENST00000667796.1 ENST00000669266.1 ENST00000670075.1 |
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| CDS CCA 72 bp | GAGTTTTGGGATATCCCTGAGTTCTTCATTGATCACTaGGGCATGACCAGCCTTTCAAGAAGCCTTGGCCTT | + |
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Preference number: 6 (lower is better) Translates to: EFWDIPEFFIDH*GMTSLSRSLGL Trigger: AAGGCCAAGGCTTCTTGAAAGGCTGGTCATGCCCCAGTGATCAATGAAGAACTCAGGGATATCCCAAAACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 22 transcripts: ENST00000436955.1 ENST00000439633.7 ENST00000608417.6 ENST00000609066.6 ENST00000654367.1 ENST00000654596.1 ENST00000655092.1 ENST00000655693.1 ENST00000655976.1 ENST00000657435.1 ENST00000662341.1 ENST00000665129.1 ENST00000665770.1 ENST00000665999.1 ENST00000666202.1 ENST00000667194.1 ENST00000667796.1 ENST00000667960.1 ENST00000669189.1 ENST00000669266.1 ENST00000670065.1 ENST00000670075.1 |
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| CDS CCA 72 bp | CCTGCCTTTTCTTGGAGGTGGGCCAAGGAATGGTTATaGGAGCGTGAAAGCTCTTCTCACAATTCTAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: PAFSWRWAKEWL*ERESSSHNSSS Trigger: AGAACTAGAATTGTGAGAAGAGCTTTCACGCTCCCATAACCATTCCTTGGCCCACCTCCAAGAAAAGGCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000439633.7 ENST00000609066.6 ENST00000665770.1 ENST00000667796.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS TCA 72 bp | CTGATTCTCTTTTATGAGAATGTTCTCTGCAGCTGCTaGGAGTCATTTAGGATGCTGGCCACCTGGTACCTG | + |
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Preference number: 6 (lower is better) Translates to: LILFYENVLCSC*ESFRMLATWYL Trigger: CAGGTACCAGGTGGCCAGCATCCTAAATGACTCTCAGCAGCTGCAGAGAACATTCTCATAAAAGAGAATCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000439633.7 ENST00000655693.1 ENST00000665770.1 ENST00000669266.1 ENST00000670075.1 |
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| CDS CCA 72 bp | GCACATCGGGCAAATGAACCTTATAGTCCTGAGTTTTaGGATATCCCTGAGTTCTTCATTGATCACTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: AHRANEPYSPEF*DIPEFFIDHWG Trigger: GCCCCAGTGATCAATGAAGAACTCAGGGATATCCCAAAACTCAGGACTATAAGGTTCATTTGCCCGATGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662341.1 |
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| CDS TCA 72 bp | ATGGAAGGGCCCCAGCATTCTATACCTCAGGATGACTaGTTCTCTTTTATGAGAATGTTCTCTGCAGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: MEGPQHSIPQDD*FSFMRMFSAAA Trigger: AGCAGCTGCAGAGAACATTCTCATAAAAGAGAATCAGTCATCCTGAGGTATAGAATGCTGGGGCCCTTCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000439633.7 ENST00000665770.1 |
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| CDS GCA 72 bp | GCCTTTTCTGTGGCACCTCTGCAGTTTGAAAATCTCTaGTTCGTTTGGTCTGAGGAGAGAATTGCATCTTTG | + |
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Preference number: 6 (lower is better) Translates to: AFSVAPLQFENL*FVWSEERIASL Trigger: CAAAGATGCAATTCTCTCCTCAGACCAAACGAAGCAGAGATTTTCAAACTGCAGAGGTGCCACAGAAAAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000655976.1 ENST00000667796.1 |
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| CDS TCA 72 bp | CTCTGTCTCTGCTGTATCCCAAGTGTCTCAGTTTATTaGCTCACTGCACATCGGGCAAATGAACCTTATAGT | + |
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Preference number: 6 (lower is better) Translates to: LCLCCIPSVSVY*LTAHRANEPYS Trigger: ACTATAAGGTTCATTTGCCCGATGTGCAGTGAGTCAATAAACTGAGACACTTGGGATACAGCAGAGACAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662341.1 |
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| CDS CCA 72 bp | TCTGAAATTGGGTCAAAAGGATCAATGACTAGTTTGTaGTGTGTGAGTCCTGTGGACGATGTGTGTACTGAC | + |
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Preference number: 6 (lower is better) Translates to: SEIGSKGSMTSL*CVSPVDDVCTD Trigger: GTCAGTACACACATCGTCCACAGGACTCACACACCACAAACTAGTCATTGATCCTTTTGACCCAATTTCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000654367.1 ENST00000655693.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS CAA 72 bp | TTGAGAATTCAGCCTTTTCTGTGGCACCTCTGCAGTTaGAAAATCTCTGCTTCGTTTGGTCTGAGGAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: LRIQPFLWHLCS*KISASFGLRRE Trigger: TTCTCTCCTCAGACCAAACGAAGCAGAGATTTTCAAACTGCAGAGGTGCCACAGAAAAGGCTGAATTCTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000655976.1 ENST00000667796.1 |
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| CDS CAA 90 bp | TCACTATGCTTGAGAATTCAGCCTTTTCTGTGGCACCTCTGCAGTTaGAAAATCTCTGCTTCGTTTGGTCTGAGGAGAGAATTGCATCTT | + |
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Preference number: 6 (lower is better) Translates to: SLCLRIQPFLWHLCS*KISASFGLRRELHL Trigger: AAGATGCAATTCTCTCCTCAGACCAAACGAAGCAGAGATTTTCAAACTGCAGAGGTGCCACAGAAAAGGCTGAATTCTCAAGCATAGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000655976.1 ENST00000667796.1 |
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| CDS CCA 72 bp | GTGCCTGTAGATAGAATTTCTTATAGTCCTGAGTTTTaGGATATCCCTGAGTTCTTCATTGATCACTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: VPVDRISYSPEF*DIPEFFIDHWG Trigger: GCCCCAGTGATCAATGAAGAACTCAGGGATATCCCAAAACTCAGGACTATAAGAAATTCTATCTACAGGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000608417.6 ENST00000665129.1 |
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| CDS TCA 72 bp | GCTAAAGGCTTTGATATGGTAATGCCTCTTTCCATATaGTCCAGCAATCTTGCTCCTTGGTATTTGCCCAAA | + |
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Preference number: 6 (lower is better) Translates to: AKGFDMVMPLSI*SSNLAPWYLPK Trigger: TTTGGGCAAATACCAAGGAGCAAGATTGCTGGATCATATGGAAAGAGGCATTACCATATCAAAGCCTTTAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000436955.1 ENST00000666202.1 |
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| CDS CCA 72 bp | GTCTATATACCGTATGATTTCAACTGTACGGCATTCTaGAAAAGACAAAATTCTCTGCAGCTGCTGAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: VYIPYDFNCTAF*KRQNSLQLLRV Trigger: GACTCTCAGCAGCTGCAGAGAATTTTGTCTTTTCCAGAATGCCGTACAGTTGAAATCATACGGTATATAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666202.1 |
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| CDS CAA 72 bp | TTTTCTGAAATTGGGTCAAAAGGATCAATGACTAGTTaGTGGTGTGTGAGTCCTGTGGACGATGTGTGTACT | + |
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Preference number: 6 (lower is better) Translates to: FSEIGSKGSMTS*WCVSPVDDVCT Trigger: AGTACACACATCGTCCACAGGACTCACACACCACAAACTAGTCATTGATCCTTTTGACCCAATTTCAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000654367.1 ENST00000655693.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS CAA 90 bp | GTAAACATATTTTCTGAAATTGGGTCAAAAGGATCAATGACTAGTTaGTGGTGTGTGAGTCCTGTGGACGATGTGTGTACTGACCATTCA | + |
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Preference number: 6 (lower is better) Translates to: VNIFSEIGSKGSMTS*WCVSPVDDVCTDHS Trigger: TGAATGGTCAGTACACACATCGTCCACAGGACTCACACACCACAAACTAGTCATTGATCCTTTTGACCCAATTTCAGAAAATATGTTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000654367.1 ENST00000655693.1 ENST00000667960.1 ENST00000670065.1 |
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| CDS TCA 72 bp | AGATCTGGTGAATATCACCAAACAACTGAAGCCAACTaGTATACGTCAGCCTATATATCCATCCATTATGGT | + |
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Preference number: 6 (lower is better) Translates to: RSGEYHQTTEAN*YTSAYISIHYG Trigger: ACCATAATGGATGGATATATAGGCTGACGTATATCAGTTGGCTTCAGTTGTTTGGTGATATTCACCAGATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000436955.1 ENST00000654596.1 ENST00000655092.1 ENST00000670065.1 |
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| CDS TCA 72 bp | AGATTTATAGGCAGCTCTTGTTATTTACACTCAGGATaGCTGATTCTCTTTTATGAGAATGTTCTCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RFIGSSCYLHSG*LILFYENVLCS Trigger: GCTGCAGAGAACATTCTCATAAAAGAGAATCAGTCATCCTGAGTGTAAATAACAAGAGCTGCCTATAAATCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000655693.1 ENST00000669266.1 ENST00000670075.1 |
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| CDS GCA 72 bp | TATTTTCACAATAAAGCACCATCTTTGTTGAATCTGTaGCTGTATTGGCTAGAAGAAATCATGTGTGTAAGG | + |
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Preference number: 6 (lower is better) Translates to: YFHNKAPSLLNL*LYWLEEIMCVR Trigger: CCTTACACACATGATTTCTTCTAGCCAATACAGGCACAGATTCAACAAAGATGGTGCTTTATTGTGAAAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000655976.1 ENST00000667796.1 |
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