Pregenerated sensors for LINC01347 (Homo sapiens)
Ensembl gene IDs: ENSG00000214837Ensembl transcript IDs: ENST00000627498.2, ENST00000630889.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCCAGGAAACGGATTCTCCCGCAGAGCCTCGGAAGCCACCGACCCTaGTCCCACCTTGACTCAGTAGGACTTACTGTAGAATTCTGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: ARKRILPQSLGSHRP*SHLDSVGLTVEFWP Trigger: AGGCCAGAATTCTACAGTAAGTCCTACTGAGTCAAGGTGGGAGCAGGGTCGGTGGCTTCCGAGGCTCTGCGGGAGAATCCGTTTCCTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000627498.2 ENST00000630889.1 |
||
| CDS TCA 90 bp | GATTCTCCCGCAGAGCCTCGGAAGCCACCGACCCTGCTCCCACCTTaGCTCAGTAGGACTTACTGTAGAATTCTGGCCTTCAGACCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: DSPAEPRKPPTLLPP*LSRTYCRILAFRPE Trigger: CTCAGGTCTGAAGGCCAGAATTCTACAGTAAGTCCTACTGAGTCAAGGTGGGAGCAGGGTCGGTGGCTTCCGAGGCTCTGCGGGAGAATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000627498.2 ENST00000630889.1 |
||
| CDS GCA 72 bp | CGGATTCTCCCGCAGAGCCTCGGAAGCCACCGACCCTaGTCCCACCTTGACTCAGTAGGACTTACTGTAGAA | + |
|
Preference number: 6 (lower is better) Translates to: RILPQSLGSHRP*SHLDSVGLTVE Trigger: TTCTACAGTAAGTCCTACTGAGTCAAGGTGGGAGCAGGGTCGGTGGCTTCCGAGGCTCTGCGGGAGAATCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000627498.2 ENST00000630889.1 |
||
| CDS CCA 72 bp | CGCAGGCTGGAATGCTGTGGTGGGATCATAGCTCACTaGAGCCTTGAATCTTTGGGTTCAAGTAGCTGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: RRLECCGGIIAH*SLESLGSSSWG Trigger: CCCCCAGCTACTTGAACCCAAAGATTCAAGGCTCCAGTGAGCTATGATCCCACCACAGCATTCCAGCCTGCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000627498.2 ENST00000630889.1 |
||
| CDS GCA 72 bp | AATGTAGAATCAGTGGGCGTGTTAAGCTTGTTTTCCTaGAACTGGATGGTCCCACGTTTCGCTGTCACCCCT | + |
|
Preference number: 6 (lower is better) Translates to: NVESVGVLSLFS*NWMVPRFAVTP Trigger: AGGGGTGACAGCGAAACGTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000627498.2 ENST00000630889.1 |
||