RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01342 (Homo sapiens)

Ensembl gene IDs: ENSG00000223823

Ensembl transcript IDs: ENST00000416774.1

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TGCCCAGTACCAGGGTCACACACACGATCCAGGGCCTTTCCCGCCTaGCCGAGGGGACCCCACTCCACACAGCCGCGCCCTCAGACACGG +
Preference number: 5 (lower is better)
Translates to: CPVPGSHTRSRAFPA*PRGPHSTQPRPQTR
Trigger: CCGTGTCTGAGGGCGCGGCTGTGTGGAGTGGGGTCCCCTCGGCCAGGCGGGAAAGGCCCTGGATCGTGTGTGTGACCCTGGTACTGGGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS TCA 90 bp AGCCCAGCTGGGGTCTCTGAAGTTCCCGGTGCCAGAGCTGCCACGTaGGAAGAGGCAGGTGCCGCCCTCCATGGCACAGCCCGCAGCAGG +
Preference number: 5 (lower is better)
Translates to: SPAGVSEVPGARAAT*EEAGAALHGTARSR
Trigger: CCTGCTGCGGGCTGTGCCATGGAGGGCGGCACCTGCCTCTTCTCACGTGGCAGCTCTGGCACCGGGAACTTCAGAGACCCCAGCTGGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS GCA 90 bp GGTCCAGAACATTCCGTCACCCCGAGGGAGGCCGAGCTCCCAGGCTaGAGCCACCGCCCCGTTCTGTCTCCACGGACTTGCCTGTCCCAG +
Preference number: 5 (lower is better)
Translates to: GPEHSVTPREAELPG*SHRPVLSPRTCLSQ
Trigger: CTGGGACAGGCAAGTCCGTGGAGACAGAACGGGGCGGTGGCTGCAGCCTGGGAGCTCGGCCTCCCTCGGGGTGACGGAATGTTCTGGACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CCA 90 bp CGGTGCCAGAGCTGCCACGTGAGAAGAGGCAGGTGCCGCCCTCCATaGCACAGCCCGCAGCAGGCATGTGGCACCAGTAAAGCCGGGTCC +
Preference number: 5 (lower is better)
Translates to: RCQSCHVRRGRCRPP*HSPQQACGTSKAGS
Trigger: GGACCCGGCTTTACTGGTGCCACATGCCTGCTGCGGGCTGTGCCATGGAGGGCGGCACCTGCCTCTTCTCACGTGGCAGCTCTGGCACCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS TCA 90 bp GGGACCCCACTCCACACAGCCGCGCCCTCAGACACGGGGCAGCTCTaGGCTCCCGCGGAGCCTGTCCAGTTTGTTCACAGCAATGGCCCT +
Preference number: 5 (lower is better)
Translates to: GTPLHTAAPSDTGQL*APAEPVQFVHSNGP
Trigger: AGGGCCATTGCTGTGAACAAACTGGACAGGCTCCGCGGGAGCTCAGAGCTGCCCCGTGTCTGAGGGCGCGGCTGTGTGGAGTGGGGTCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CCA 90 bp GATGGAGAGCCGGGGCTCTGTCCACACCTGGACACCTCCCGGCCGTaGAGAGCAGAGGTCGGCCTGGAACTGCTCCCGAGATGCAGTGTG +
Preference number: 5 (lower is better)
Translates to: DGEPGLCPHLDTSRP*RAEVGLELLPRCSV
Trigger: CACACTGCATCTCGGGAGCAGTTCCAGGCCGACCTCTGCTCTCCACGGCCGGGAGGTGTCCAGGTGTGGACAGAGCCCCGGCTCTCCATC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CCA 90 bp GAACAAGTCAAACCGGTCCCATTTCCCGCACCTTTGTCTGGTGGGTaGGAGGCTAAACTAACCGCCTCAGCGCCGCGAAGAACAAAGCCG +
Preference number: 5 (lower is better)
Translates to: EQVKPVPFPAPLSGG*EAKLTASAPRRTKP
Trigger: CGGCTTTGTTCTTCGCGGCGCTGAGGCGGTTAGTTTAGCCTCCCACCCACCAGACAAAGGTGCGGGAAATGGGACCGGTTTGACTTGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS GCA 72 bp CCTCAGCGCCGCGAAGAACAAAGCCGGGTGGGGCCGTaGCCACCAGCCTCGGAGCCGGACCCAGCTTCTCCC +
Preference number: 6 (lower is better)
Translates to: PQRREEQSRVGP*PPASEPDPASP
Trigger: GGGAGAAGCTGGGTCCGGCTCCGAGGCTGGTGGGCACGGCCCCACCCGGCTTTGTTCTTCGCGGCGCTGAGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS TCA 72 bp CTGGCCTGGCCCTGGTGTCGGGCCAGCGTTGAAGCCTaGGCTCTGTGGCTGCCAGGGGTTCTGGCGGGGCTC +
Preference number: 6 (lower is better)
Translates to: LAWPWCRASVEA*ALWLPGVLAGL
Trigger: GAGCCCCGCCAGAACCCCTGGCAGCCACAGAGCTCAGGCTTCAACGCTGGCCCGACACCAGGGCCAGGCCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CCA 72 bp ACTAACCGCCTCAGCGCCGCGAAGAACAAAGCCGGGTaGGGCCGTGCCCACCAGCCTCGGAGCCGGACCCAG +
Preference number: 6 (lower is better)
Translates to: TNRLSAAKNKAG*GRAHQPRSRTQ
Trigger: CTGGGTCCGGCTCCGAGGCTGGTGGGCACGGCCCCACCCGGCTTTGTTCTTCGCGGCGCTGAGGCGGTTAGT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CCA 72 bp GTGGACGCTGGCGCTGCCTGGAGCTGCGTGGGGACCTaGCTGACGGGGATCCCTCCCTGCGCCAAGACGCTT +
Preference number: 6 (lower is better)
Translates to: VDAGAAWSCVGT*LTGIPPCAKTL
Trigger: AAGCGTCTTGGCGCAGGGAGGGATCCCCGTCAGCCAGGTCCCCACGCAGCTCCAGGCAGCGCCAGCGTCCAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS GCA 72 bp CATTCCGTCACCCCGAGGGAGGCCGAGCTCCCAGGCTaGAGCCACCGCCCCGTTCTGTCTCCACGGACTTGC +
Preference number: 6 (lower is better)
Translates to: HSVTPREAELPG*SHRPVLSPRTC
Trigger: GCAAGTCCGTGGAGACAGAACGGGGCGGTGGCTGCAGCCTGGGAGCTCGGCCTCCCTCGGGGTGACGGAATG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CCA 72 bp TGGACACCTCCCGGCCGTGGAGAGCAGAGGTCGGCCTaGAACTGCTCCCGAGATGCAGTGTGGGGCTGGGGG +
Preference number: 6 (lower is better)
Translates to: WTPPGRGEQRSA*NCSRDAVWGWG
Trigger: CCCCCAGCCCCACACTGCATCTCGGGAGCAGTTCCAGGCCGACCTCTGCTCTCCACGGCCGGGAGGTGTCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CCA 72 bp CCGGGGCTCTGTCCACACCTGGACACCTCCCGGCCGTaGAGAGCAGAGGTCGGCCTGGAACTGCTCCCGAGA +
Preference number: 6 (lower is better)
Translates to: PGLCPHLDTSRP*RAEVGLELLPR
Trigger: TCTCGGGAGCAGTTCCAGGCCGACCTCTGCTCTCCACGGCCGGGAGGTGTCCAGGTGTGGACAGAGCCCCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CAA 90 bp TTCTCCCAGGCTGATTTCTGGCCTGGCCCTGGTGTCGGGCCAGCGTaGAAGCCTGAGCTCTGTGGCTGCCAGGGGTTCTGGCGGGGCTCG +
Preference number: 6 (lower is better)
Translates to: FSQADFWPGPGVGPA*KPELCGCQGFWRGS
Trigger: CGAGCCCCGCCAGAACCCCTGGCAGCCACAGAGCTCAGGCTTCAACGCTGGCCCGACACCAGGGCCAGGCCAGAAATCAGCCTGGGAGAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS TCA 72 bp CTCCACACAGCCGCGCCCTCAGACACGGGGCAGCTCTaGGCTCCCGCGGAGCCTGTCCAGTTTGTTCACAGC +
Preference number: 6 (lower is better)
Translates to: LHTAAPSDTGQL*APAEPVQFVHS
Trigger: GCTGTGAACAAACTGGACAGGCTCCGCGGGAGCTCAGAGCTGCCCCGTGTCTGAGGGCGCGGCTGTGTGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CAA 72 bp GCTGATTTCTGGCCTGGCCCTGGTGTCGGGCCAGCGTaGAAGCCTGAGCTCTGTGGCTGCCAGGGGTTCTGG +
Preference number: 6 (lower is better)
Translates to: ADFWPGPGVGPA*KPELCGCQGFW
Trigger: CCAGAACCCCTGGCAGCCACAGAGCTCAGGCTTCAACGCTGGCCCGACACCAGGGCCAGGCCAGAAATCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS GCA 72 bp GGGTTGCTAATATCAGGGGTGAGCCGGCCCCTGACGTaGAGGGTGACCATGTGCCTGAACAAGTCAAACCGG +
Preference number: 6 (lower is better)
Translates to: GLLISGVSRPLT*RVTMCLNKSNR
Trigger: CCGGTTTGACTTGTTCAGGCACATGGTCACCCTGCACGTCAGGGGCCGGCTCACCCCTGATATTAGCAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CCA 72 bp AAACCGGTCCCATTTCCCGCACCTTTGTCTGGTGGGTaGGAGGCTAAACTAACCGCCTCAGCGCCGCGAAGA +
Preference number: 6 (lower is better)
Translates to: KPVPFPAPLSGG*EAKLTASAPRR
Trigger: TCTTCGCGGCGCTGAGGCGGTTAGTTTAGCCTCCCACCCACCAGACAAAGGTGCGGGAAATGGGACCGGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000416774.1
CDS CAA 90 bp GACCATGTGCCTGAACAAGTCAAACCGGTCCCATTTCCCGCACCTTaGTCTGGTGGGTGGGAGGCTAAACTAACCGCCTCAGCGCCGCGA +
Preference number: 6 (lower is better)
Translates to: DHVPEQVKPVPFPAP*SGGWEAKLTASAPR
Trigger: TCGCGGCGCTGAGGCGGTTAGTTTAGCCTCCCACCCACCAGACAAAGGTGCGGGAAATGGGACCGGTTTGACTTGTTCAGGCACATGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000416774.1