Pregenerated sensors for LINC01340 (Homo sapiens)
Ensembl gene IDs: ENSG00000250331Ensembl transcript IDs: ENST00000504012.1, ENST00000656559.1, ENST00000657058.1, ENST00000663326.1, ENST00000668472.1, ENST00000668863.1
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AACTACAGTGACAGGCCCTGGTACCCATTTCTTCCACTTTCAGCTTaGGGCTTGCTTCCCCATTTACTCCCAGGAGCACTTCATCCTTCC | + |
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Preference number: 5 (lower is better) Translates to: NYSDRPWYPFLPLSA*GLLPHLLPGALHPS Trigger: GGAAGGATGAAGTGCTCCTGGGAGTAAATGGGGAAGCAAGCCTCAAGCTGAAAGTGGAAGAAATGGGTACCAGGGCCTGTCACTGTAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS TCA 90 bp | TTTATCTTGGCTCCAGACAGGCTTTCTTGGCCTGTCAGAACCAAGTaGATTGTCTACAGAAAGCCTTCCATCAAAGCTTCCTTGAGCACC | + |
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Preference number: 5 (lower is better) Translates to: FILAPDRLSWPVRTK*IVYRKPSIKASLST Trigger: GGTGCTCAAGGAAGCTTTGATGGAAGGCTTTCTGTAGACAATTCACTTGGTTCTGACAGGCCAAGAAAGCCTGTCTGGAGCCAAGATAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668863.1 |
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| CDS TCA 90 bp | AAGAGCGAATCCTCCCGAACTCATTTTATGAGGGCATCATCCTCCTaGTACCAAAGCCATGCATTGTCAAGTTGTCCCAAATGCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: KSESSRTHFMRASSS*YQSHALSSCPKCFL Trigger: GAGAAAGCATTTGGGACAACTTGACAATGCATGGCTTTGGTATCAGGAGGATGATGCCCTCATAAAATGAGTTCGGGAGGATTCGCTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS TCA 90 bp | GAACCAAGTGAATTGTCTACAGAAAGCCTTCCATCAAAGCTTCCTTaGGCACCACGTCTACGGAAGGGACCCCAAAGAATTGCAAAAGAT | + |
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Preference number: 5 (lower is better) Translates to: EPSELSTESLPSKLP*APRLRKGPQRIAKD Trigger: ATCTTTTGCAATTCTTTGGGGTCCCTTCCGTAGACGTGGTGCTCAAGGAAGCTTTGATGGAAGGCTTTCTGTAGACAATTCACTTGGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668863.1 |
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| CDS GCA 90 bp | CTGCCTCCAGCCTTTTCCATTAGCTGTGCTCCACAACTTCAAAGGTaGAGTCAAGAACTCTTGGAATTGCCTTCATTTTGCTTGAGGATT | + |
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Preference number: 5 (lower is better) Translates to: LPPAFSISCAPQLQR*SQELLELPSFCLRI Trigger: AATCCTCAAGCAAAATGAAGGCAATTCCAAGAGTTCTTGACTGCACCTTTGAAGTTGTGGAGCACAGCTAATGGAAAAGGCTGGAGGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS GCA 90 bp | CCGAACTCATTTTATGAGGGCATCATCCTCCTGATACCAAAGCCATaGATTGTCAAGTTGTCCCAAATGCTTTCTCATAGGTTCAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PNSFYEGIILLIPKP*IVKLSQMLSHRFSR Trigger: CCTGCTGAACCTATGAGAAAGCATTTGGGACAACTTGACAATGCATGGCTTTGGTATCAGGAGGATGATGCCCTCATAAAATGAGTTCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS GCA 90 bp | TTATTCCCCTGGCAAACTCCTGTGAGGTTTTGTGTTGAGAGAGAATaGATTACTCTAACAATGGCAAAGCTCCTGTTGGGTGATCCTCTC | + |
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Preference number: 5 (lower is better) Translates to: LFPWQTPVRFCVERE*ITLTMAKLLLGDPL Trigger: GAGAGGATCACCCAACAGGAGCTTTGCCATTGTTAGAGTAATGCATTCTCTCTCAACACAAAACCTCACAGGAGTTTGCCAGGGGAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS TCA 90 bp | AACAACTGGAAAATTGACTTGCCACCATGGGGAGATCACACAAGATaGCATGGCTGTCTACCATTTGCCTCTAGAGAAACCTTCCAAATC | + |
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Preference number: 5 (lower is better) Translates to: NNWKIDLPPWGDHTR*HGCLPFASRETFQI Trigger: GATTTGGAAGGTTTCTCTAGAGGCAAATGGTAGACAGCCATGTCATCTTGTGTGATCTCCCCATGGTGGCAAGTCAATTTTCCAGTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656559.1 ENST00000657058.1 ENST00000663326.1 |
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| CDS TCA 90 bp | AACAGAAGCAACTCCAGACTCTCCATTTACTTCATATTGGAAAACTaGTGCTTCTCTTTTCAAGGACTCTTACAAACAGGGCTTGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: NRSNSRLSIYFILEN*CFSFQGLLQTGLVE Trigger: CTCCACAAGCCCTGTTTGTAAGAGTCCTTGAAAAGAGAAGCATCAGTTTTCCAATATGAAGTAAATGGAGAGTCTGGAGTTGCTTCTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000504012.1 ENST00000668472.1 |
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| CDS GCA 90 bp | TGCCAGGAAATTTTTCTTTTGCACATTTCAATGGCAGTCGAGTTCTaGAGCAGCTTGAGAATAAGACCAAGATCACACACTTATCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: CQEIFLLHISMAVEF*SSLRIRPRSHTYQE Trigger: TTCCTGATAAGTGTGTGATCTTGGTCTTATTCTCAAGCTGCTGCAGAACTCGACTGCCATTGAAATGTGCAAAAGAAAAATTTCCTGGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000657058.1 |
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| CDS CCA 90 bp | ATCTGCTCTATAGTAGGCTGTGGTGATAGGACAAAGAAAACAAGATaGACAAACTCCTTTTTCTCCAAGAGCTCACATTCTAACGTTAGA | + |
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Preference number: 5 (lower is better) Translates to: ICSIVGCGDRTKKTR*TNSFFSKSSHSNVR Trigger: TCTAACGTTAGAATGTGAGCTCTTGGAGAAAAAGGAGTTTGTCCATCTTGTTTTCTTTGTCCTATCACCACAGCCTACTATAGAGCAGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS GCA 90 bp | CAACTTCAAAGGTGCAGTCAAGAACTCTTGGAATTGCCTTCATTTTaGTTGAGGATTGGAAGAGAAGGAGAAATAACAGTTTTCTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: QLQRCSQELLELPSF*LRIGREGEITVFSL Trigger: CAAAGAGAAAACTGTTATTTCTCCTTCTCTTCCAATCCTCAAGCAAAATGAAGGCAATTCCAAGAGTTCTTGACTGCACCTTTGAAGTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS CCA 90 bp | GCAAACATACAACAATTTCAGTTTGAACTGGAAATGATGGAGACTTaGATTACAATAGCAACCCCGAAAGAGGTGATTGGGAGCAAAATT | + |
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Preference number: 5 (lower is better) Translates to: ANIQQFQFELEMMET*ITIATPKEVIGSKI Trigger: AATTTTGCTCCCAATCACCTCTTTCGGGGTTGCTATTGTAATCCAAGTCTCCATCATTTCCAGTTCAAACTGAAATTGTTGTATGTTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656559.1 ENST00000657058.1 ENST00000663326.1 |
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| CDS CCA 90 bp | AATATGTCACATGACAAGTGCCTGATAGAAAAATACAATGGAATTTaGGGATATCAGGTGACTGAAGGAAATGCTAATATCAAGGATGGC | + |
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Preference number: 5 (lower is better) Translates to: NMSHDKCLIEKYNGI*GYQVTEGNANIKDG Trigger: GCCATCCTTGATATTAGCATTTCCTTCAGTCACCTGATATCCCCAAATTCCATTGTATTTTTCTATCAGGCACTTGTCATGTGACATATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS CCA 90 bp | TCATTCTACTTCTGTTGCCTCTGGTTTCCAGTTGGGTTCAGTCAATaGGAAGTATTAATAGAAGATATAAGCATAGTGGGAAATATAGAC | + |
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Preference number: 5 (lower is better) Translates to: SFYFCCLWFPVGFSQ*EVLIEDISIVGNID Trigger: GTCTATATTTCCCACTATGCTTATATCTTCTATTAATACTTCCCATTGACTGAACCCAACTGGAAACCAGAGGCAACAGAAGTAGAATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS GCA 72 bp | TTAACCACATTCTCCTACTGCCCCATCTCTTGGCTCTaGCTCTGTGGTTGCTCCAGCCTGCTCCTGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LTTFSYCPISWL*LCGCSSLLLPP Trigger: TGGAGGCAGGAGCAGGCTGGAGCAACCACAGAGGCAGAGCCAAGAGATGGGGCAGTAGGAGAATGTGGTTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656559.1 ENST00000657058.1 ENST00000663326.1 |
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| CDS CAA 90 bp | TGCCACCATGGGGAGATCACACAAGATGACATGGCTGTCTACCATTaGCCTCTAGAGAAACCTTCCAAATCACCTCGCCCCACTCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: CHHGEITQDDMAVYH*PLEKPSKSPRPTPD Trigger: GTCTGGAGTGGGGCGAGGTGATTTGGAAGGTTTCTCTAGAGGCAAATGGTAGACAGCCATGTCATCTTGTGTGATCTCCCCATGGTGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656559.1 ENST00000657058.1 ENST00000663326.1 |
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| CDS GCA 72 bp | CCTGGTACCCATTTCTTCCACTTTCAGCTTGAGGCTTaGTTCCCCATTTACTCCCAGGAGCACTTCATCCTT | + |
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Preference number: 6 (lower is better) Translates to: PGTHFFHFQLEA*FPIYSQEHFIL Trigger: AAGGATGAAGTGCTCCTGGGAGTAAATGGGGAAGCAAGCCTCAAGCTGAAAGTGGAAGAAATGGGTACCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS TCA 72 bp | GCTCCAGACAGGCTTTCTTGGCCTGTCAGAACCAAGTaGATTGTCTACAGAAAGCCTTCCATCAAAGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: APDRLSWPVRTK*IVYRKPSIKAS Trigger: GGAAGCTTTGATGGAAGGCTTTCTGTAGACAATTCACTTGGTTCTGACAGGCCAAGAAAGCCTGTCTGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668863.1 |
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| CDS TCA 72 bp | GAATTGTCTACAGAAAGCCTTCCATCAAAGCTTCCTTaGGCACCACGTCTACGGAAGGGACCCCAAAGAATT | + |
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Preference number: 6 (lower is better) Translates to: ELSTESLPSKLP*APRLRKGPQRI Trigger: AATTCTTTGGGGTCCCTTCCGTAGACGTGGTGCTCAAGGAAGCTTTGATGGAAGGCTTTCTGTAGACAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668863.1 |
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| CDS CAA 90 bp | TATGAGGGCATCATCCTCCTGATACCAAAGCCATGCATTGTCAAGTaGTCCCAAATGCTTTCTCATAGGTTCAGCAGGATGTTGATGACC | + |
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Preference number: 6 (lower is better) Translates to: YEGIILLIPKPCIVK*SQMLSHRFSRMLMT Trigger: GGTCATCAACATCCTGCTGAACCTATGAGAAAGCATTTGGGACAACTTGACAATGCATGGCTTTGGTATCAGGAGGATGATGCCCTCATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS TCA 72 bp | AAAATTGACTTGCCACCATGGGGAGATCACACAAGATaGCATGGCTGTCTACCATTTGCCTCTAGAGAAACC | + |
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Preference number: 6 (lower is better) Translates to: KIDLPPWGDHTR*HGCLPFASRET Trigger: GGTTTCTCTAGAGGCAAATGGTAGACAGCCATGTCATCTTGTGTGATCTCCCCATGGTGGCAAGTCAATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656559.1 ENST00000657058.1 ENST00000663326.1 |
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| CDS TCA 72 bp | TCCTCCCGAACTCATTTTATGAGGGCATCATCCTCCTaGTACCAAAGCCATGCATTGTCAAGTTGTCCCAAA | + |
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Preference number: 6 (lower is better) Translates to: SSRTHFMRASSS*YQSHALSSCPK Trigger: TTTGGGACAACTTGACAATGCATGGCTTTGGTATCAGGAGGATGATGCCCTCATAAAATGAGTTCGGGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS TCA 72 bp | ATGCATTACTCTAACAATGGCAAAGCTCCTGTTGGGTaGTCCTCTCATAGACTTGCAACTACAGTGACAGGC | + |
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Preference number: 6 (lower is better) Translates to: MHYSNNGKAPVG*SSHRLATTVTG Trigger: GCCTGTCACTGTAGTTGCAAGTCTATGAGAGGATCACCCAACAGGAGCTTTGCCATTGTTAGAGTAATGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS TCA 72 bp | AATGGTGATGAATGGGTCTCTGAAACACTCAGATCCTaGAGGGTGTATAGGCTGTGTCTAGTTCCTCCATTA | + |
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Preference number: 6 (lower is better) Translates to: NGDEWVSETLRS*RVYRLCLVPPL Trigger: TAATGGAGGAACTAGACACAGCCTATACACCCTTCAGGATCTGAGTGTTTCAGAGACCCATTCATCACCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS GCA 72 bp | GCCTTTTCCATTAGCTGTGCTCCACAACTTCAAAGGTaGAGTCAAGAACTCTTGGAATTGCCTTCATTTTGC | + |
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Preference number: 6 (lower is better) Translates to: AFSISCAPQLQR*SQELLELPSFC Trigger: GCAAAATGAAGGCAATTCCAAGAGTTCTTGACTGCACCTTTGAAGTTGTGGAGCACAGCTAATGGAAAAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656559.1 ENST00000657058.1 ENST00000663326.1 |
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| CDS GCA 72 bp | GAGATGCTACCTGAATATAGTAGAGGAGTAAGTATATaGATATCTGGGGACACATGTTCCAGGCAGAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: EMLPEYSRGVSI*ISGDTCSRQRR Trigger: TCTCCTCTGCCTGGAACATGTGTCCCCAGATATGCATATACTTACTCCTCTACTATATTCAGGTAGCATCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS GCA 72 bp | TGGCAAACTCCTGTGAGGTTTTGTGTTGAGAGAGAATaGATTACTCTAACAATGGCAAAGCTCCTGTTGGGT | + |
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Preference number: 6 (lower is better) Translates to: WQTPVRFCVERE*ITLTMAKLLLG Trigger: ACCCAACAGGAGCTTTGCCATTGTTAGAGTAATGCATTCTCTCTCAACACAAAACCTCACAGGAGTTTGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS CAA 72 bp | ATCATCCTCCTGATACCAAAGCCATGCATTGTCAAGTaGTCCCAAATGCTTTCTCATAGGTTCAGCAGGATG | + |
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Preference number: 6 (lower is better) Translates to: IILLIPKPCIVK*SQMLSHRFSRM Trigger: CATCCTGCTGAACCTATGAGAAAGCATTTGGGACAACTTGACAATGCATGGCTTTGGTATCAGGAGGATGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS GCA 72 bp | TTTTATGAGGGCATCATCCTCCTGATACCAAAGCCATaGATTGTCAAGTTGTCCCAAATGCTTTCTCATAGG | + |
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Preference number: 6 (lower is better) Translates to: FYEGIILLIPKP*IVKLSQMLSHR Trigger: CCTATGAGAAAGCATTTGGGACAACTTGACAATGCATGGCTTTGGTATCAGGAGGATGATGCCCTCATAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS CAA 72 bp | TTGCACATTTCAATGGCAGTCGAGTTCTGCAGCAGCTaGAGAATAAGACCAAGATCACACACTTATCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: LHISMAVEFCSS*RIRPRSHTYQE Trigger: TTCCTGATAAGTGTGTGATCTTGGTCTTATTCTCAAGCTGCTGCAGAACTCGACTGCCATTGAAATGTGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657058.1 |
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| CDS CAA 90 bp | AGCTGTGCTCCACAACTTCAAAGGTGCAGTCAAGAACTCTTGGAATaGCCTTCATTTTGCTTGAGGATTGGAAGAGAAGGAGAAATAACA | + |
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Preference number: 6 (lower is better) Translates to: SCAPQLQRCSQELLE*PSFCLRIGREGEIT Trigger: TGTTATTTCTCCTTCTCTTCCAATCCTCAAGCAAAATGAAGGCAATTCCAAGAGTTCTTGACTGCACCTTTGAAGTTGTGGAGCACAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS CCA 72 bp | TATCAAGGATGGCAAGGGAAAGACTTTCTAAAAAGCTaGCCTAAGAGATGCTACCTGAATATAGTAGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: YQGWQGKDFLKS*PKRCYLNIVEE Trigger: CTCCTCTACTATATTCAGGTAGCATCTCTTAGGCCAGCTTTTTAGAAAGTCTTTCCCTTGCCATCCTTGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS CAA 72 bp | AAAAGCAAACTTTCTGACTCACCATGCATTGTCAAGTaGTCCCAAATGCTTTCTCATAGGTTCAGCAGGATG | + |
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Preference number: 6 (lower is better) Translates to: KSKLSDSPCIVK*SQMLSHRFSRM Trigger: CATCCTGCTGAACCTATGAGAAAGCATTTGGGACAACTTGACAATGCATGGTGAGTCAGAAAGTTTGCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000504012.1 ENST00000668863.1 |
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| CDS CAA 90 bp | GTTGAATCAAAAAGCAAACTTTCTGACTCACCATGCATTGTCAAGTaGTCCCAAATGCTTTCTCATAGGTTCAGCAGGATGTTGATGACC | + |
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Preference number: 6 (lower is better) Translates to: VESKSKLSDSPCIVK*SQMLSHRFSRMLMT Trigger: GGTCATCAACATCCTGCTGAACCTATGAGAAAGCATTTGGGACAACTTGACAATGCATGGTGAGTCAGAAAGTTTGCTTTTTGATTCAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000504012.1 ENST00000668863.1 |
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| CDS TCA 72 bp | AGGGGAGGAAGTGGCAAACATACAACAATTTCAGTTTaGACTGGAAATGATGGAGACTTGGATTACAATAGC | + |
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Preference number: 6 (lower is better) Translates to: RGGSGKHTTISV*TGNDGDLDYNS Trigger: GCTATTGTAATCCAAGTCTCCATCATTTCCAGTTCAAACTGAAATTGTTGTATGTTTGCCACTTCCTCCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656559.1 ENST00000657058.1 ENST00000663326.1 |
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| CDS TCA 72 bp | GTGTATAGGCTGTGTCTAGTTCCTCCATTAAAATCGTaGGGATACGTATCCATATCATTCTCAGCTTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: VYRLCLVPPLKS*GYVSISFSALK Trigger: CTTCAAAGCTGAGAATGATATGGATACGTATCCTCACGATTTTAATGGAGGAACTAGACACAGCCTATACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS GCA 72 bp | ATTTTTCTTTTGCACATTTCAATGGCAGTCGAGTTCTaGAGCAGCTTGAGAATAAGACCAAGATCACACACT | + |
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Preference number: 6 (lower is better) Translates to: IFLLHISMAVEF*SSLRIRPRSHT Trigger: AGTGTGTGATCTTGGTCTTATTCTCAAGCTGCTGCAGAACTCGACTGCCATTGAAATGTGCAAAAGAAAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000657058.1 |
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| CDS CCA 72 bp | TTCTGTTGCCTCTGGTTTCCAGTTGGGTTCAGTCAATaGGAAGTATTAATAGAAGATATAAGCATAGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: FCCLWFPVGFSQ*EVLIEDISIVG Trigger: TCCCACTATGCTTATATCTTCTATTAATACTTCCCATTGACTGAACCCAACTGGAAACCAGAGGCAACAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668472.1 |
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| CDS TCA 72 bp | AACTCCAGACTCTCCATTTACTTCATATTGGAAAACTaGTGCTTCTCTTTTCAAGGACTCTTACAAACAGGG | + |
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Preference number: 6 (lower is better) Translates to: NSRLSIYFILEN*CFSFQGLLQTG Trigger: CCCTGTTTGTAAGAGTCCTTGAAAAGAGAAGCATCAGTTTTCCAATATGAAGTAAATGGAGAGTCTGGAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000504012.1 ENST00000668472.1 |
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| CDS CCA 72 bp | TCTGAGTGCTATGTTGAAACTAATCAGGGGAGGAAGTaGCAAACATACAACAATTTCAGTTTGAACTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: SECYVETNQGRK*QTYNNFSLNWK Trigger: TTTCCAGTTCAAACTGAAATTGTTGTATGTTTGCCACTTCCTCCCCTGATTAGTTTCAACATAGCACTCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656559.1 ENST00000657058.1 ENST00000663326.1 |
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| CDS GCA 72 bp | ATAGTTGAATCAAAAAGCAAACTTTCTGACTCACCATaGATTGTCAAGTTGTCCCAAATGCTTTCTCATAGG | + |
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Preference number: 6 (lower is better) Translates to: IVESKSKLSDSP*IVKLSQMLSHR Trigger: CCTATGAGAAAGCATTTGGGACAACTTGACAATGCATGGTGAGTCAGAAAGTTTGCTTTTTGATTCAACTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000504012.1 ENST00000668863.1 |
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| CDS CCA 72 bp | AATGTTTATGACATAATGCTCCTCTGCTTTTCTTCTTaGGAGTTGGGTTTTAGCTTAGTGACTTTGAAGGTA | + |
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Preference number: 6 (lower is better) Translates to: NVYDIMLLCFSS*ELGFSLVTLKV Trigger: TACCTTCAAAGTCACTAAGCTAAAACCCAACTCCCAAGAAGAAAAGCAGAGGAGCATTATGTCATAAACATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663326.1 |
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| CDS CCA 72 bp | CATGACAAGTGCCTGATAGAAAAATACAATGGAATTTaGGGATATCAGGTGACTGAAGGAAATGCTAATATC | + |
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Preference number: 6 (lower is better) Translates to: HDKCLIEKYNGI*GYQVTEGNANI Trigger: GATATTAGCATTTCCTTCAGTCACCTGATATCCCCAAATTCCATTGTATTTTTCTATCAGGCACTTGTCATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000657058.1 ENST00000663326.1 |
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| CDS CAA 72 bp | AAGTTAAACATTACAAGAACTACTCTGAGTGCTATGTaGAAACTAATCAGGGGAGGAAGTGGCAAACATACA | + |
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Preference number: 6 (lower is better) Translates to: KLNITRTTLSAM*KLIRGGSGKHT Trigger: TGTATGTTTGCCACTTCCTCCCCTGATTAGTTTCAACATAGCACTCAGAGTAGTTCTTGTAATGTTTAACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656559.1 ENST00000657058.1 ENST00000663326.1 |
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