Pregenerated sensors for LINC01339 (Homo sapiens)
Ensembl gene IDs: ENSG00000248555Ensembl transcript IDs: ENST00000505712.5, ENST00000518436.5, ENST00000519336.1, ENST00000524094.2, ENST00000658685.1, ENST00000660853.1, ENST00000667644.1, ENST00000669667.1, ENST00000670522.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAAGCAGCAGATAAGATACCAGACTGTCTGCCTTGCTCCGCTGCATaGGGACTGAGAGCTCCCCCTTCTGGACAAATGACATTGCCACTC | + |
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Preference number: 5 (lower is better) Translates to: QAADKIPDCLPCSAA*GLRAPPSGQMTLPL Trigger: GAGTGGCAATGTCATTTGTCCAGAAGGGGGAGCTCTCAGTCCGCATGCAGCGGAGCAAGGCAGACAGTCTGGTATCTTATCTGCTGCTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS GCA 90 bp | CAGACAATTTCCCAAGCAGCAGATAAGATACCAGACTGTCTGCCTTaGTCCGCTGCATGCGGACTGAGAGCTCCCCCTTCTGGACAAATG | + |
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Preference number: 5 (lower is better) Translates to: QTISQAADKIPDCLP*SAACGLRAPPSGQM Trigger: CATTTGTCCAGAAGGGGGAGCTCTCAGTCCGCATGCAGCGGAGCAAGGCAGACAGTCTGGTATCTTATCTGCTGCTTGGGAAATTGTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS CCA 90 bp | CCAAGGAACCTCAGTGGAAGCCAAGGAAATTCACCATTGAACTCTTaGAATTATCGTCCTGATGCATCCCCCTTTGGAGCTCGAGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: PRNLSGSQGNSPLNS*NYRPDASPFGAREA Trigger: AGCCTCTCGAGCTCCAAAGGGGGATGCATCAGGACGATAATTCCAAGAGTTCAATGGTGAATTTCCTTGGCTTCCACTGAGGTTCCTTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670522.1 |
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| CDS CCA 90 bp | CTTTTTAAGCAGATGAGGTCCAGCGTGCTCCAGCGGCAAATCGCATaGTTTGTGTTGATATTTTCCTGTCAGACAATTTCCCAAGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: LFKQMRSSVLQRQIA*FVLIFSCQTISQAA Trigger: TGCTGCTTGGGAAATTGTCTGACAGGAAAATATCAACACAAACCATGCGATTTGCCGCTGGAGCACGCTGGACCTCATCTGCTTAAAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS TCA 90 bp | TTGAAGTTAACAGGTAGCTCAGTGGAAGCCAAGGAAATTCACCATTaGACTCTTGGAATTATCGTCCTGATGCATCCCCCTTTGGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: LKLTGSSVEAKEIHH*TLGIIVLMHPPLEL Trigger: GAGCTCCAAAGGGGGATGCATCAGGACGATAATTCCAAGAGTTCAATGGTGAATTTCCTTGGCTTCCACTGAGCTACCTGTTAACTTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000505712.5 ENST00000667644.1 |
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| CDS GCA 90 bp | CTCTTACCATTACTGATACACCATCATGTAGTCTCCAGGCCAGTGTaGTTGTTGAAGTTAACAGGTAGCTCAGTGGAAGCCAAGGAAATT | + |
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Preference number: 5 (lower is better) Translates to: LLPLLIHHHVVSRPV*LLKLTGSSVEAKEI Trigger: AATTTCCTTGGCTTCCACTGAGCTACCTGTTAACTTCAACAAGCACACTGGCCTGGAGACTACATGATGGTGTATCAGTAATGGTAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667644.1 |
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| CDS GCA 90 bp | GTAAATCCATTACTGATACACCATCATGTAGTCTCCAGGCCAGTGTaGTTGTTGAAGTTAACAGGTAGCTCAGTGGAAGCCAAGGAAATT | + |
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Preference number: 5 (lower is better) Translates to: VNPLLIHHHVVSRPV*LLKLTGSSVEAKEI Trigger: AATTTCCTTGGCTTCCACTGAGCTACCTGTTAACTTCAACAAGCACACTGGCCTGGAGACTACATGATGGTGTATCAGTAATGGATTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505712.5 |
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| CDS GCA 90 bp | GTAAATCCATTACTGATACACCATCATGTAGTCTCCAGGCCAGTGTaGTTGTTGAAGTTAACAGGTAGCTGCAGCCATCATAAGATTACC | + |
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Preference number: 5 (lower is better) Translates to: VNPLLIHHHVVSRPV*LLKLTGSCSHHKIT Trigger: GGTAATCTTATGATGGCTGCAGCTACCTGTTAACTTCAACAAGCACACTGGCCTGGAGACTACATGATGGTGTATCAGTAATGGATTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000524094.2 |
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| CDS CCA 90 bp | AGAAAGCAGTTTAGAAAAGAATCAGGAACCATGAATCACCATCACTaGGTTCACTTGAGACTGGATTCACTGGGTTTTTCTGAGACTCCA | + |
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Preference number: 5 (lower is better) Translates to: RKQFRKESGTMNHHH*VHLRLDSLGFSETP Trigger: TGGAGTCTCAGAAAAACCCAGTGAATCCAGTCTCAAGTGAACCCAGTGATGGTGATTCATGGTTCCTGATTCTTTTCTAAACTGCTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000670522.1 |
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| CDS TCA 90 bp | TATAACATCCTTTATAAATACCATTGGTTCTCAGTGAACTCCTCCTaGCCTCCTGGTCTGAGACTGTCTCTATGTGATGTACATAATTCT | + |
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Preference number: 5 (lower is better) Translates to: YNILYKYHWFSVNSS*PPGLRLSLCDVHNS Trigger: AGAATTATGTACATCACATAGAGACAGTCTCAGACCAGGAGGTCAGGAGGAGTTCACTGAGAACCAATGGTATTTATAAAGGATGTTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS TCA 90 bp | AATGTTGTATATAGTGATGTTAGAGATCATAATGAATATTGGAGGTaGGAACAGGATGACCTCAAGGGTATCCTTCTGGAGCATCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: NVVYSDVRDHNEYWR*EQDDLKGILLEHQK Trigger: TTTCTGATGCTCCAGAAGGATACCCTTGAGGTCATCCTGTTCTCACCTCCAATATTCATTATGATCTCTAACATCACTATATACAACATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518436.5 |
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| CDS GCA 90 bp | GACAAATGCACAGTGCTATTCAGAGACTCATTAATTTGCAATGGGTaGAGTGCTCATGACATATTAGTGCAAAATTCAAATGTCTTTGTA | + |
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Preference number: 5 (lower is better) Translates to: DKCTVLFRDSLICNG*SAHDILVQNSNVFV Trigger: TACAAAGACATTTGAATTTTGCACTAATATGTCATGAGCACTGCACCCATTGCAAATTAATGAGTCTCTGAATAGCACTGTGCATTTGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS TCA 90 bp | AGTGCTATTCAGAGACTCATTAATTTGCAATGGGTGCAGTGCTCATaGCATATTAGTGCAAAATTCAAATGTCTTTGTAGCAATGTGAAT | + |
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Preference number: 5 (lower is better) Translates to: SAIQRLINLQWVQCS*HISAKFKCLCSNVN Trigger: ATTCACATTGCTACAAAGACATTTGAATTTTGCACTAATATGTCATGAGCACTGCACCCATTGCAAATTAATGAGTCTCTGAATAGCACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS GCA 72 bp | TCCCAAGCAGCAGATAAGATACCAGACTGTCTGCCTTaGTCCGCTGCATGCGGACTGAGAGCTCCCCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SQAADKIPDCLP*SAACGLRAPPS Trigger: AGAAGGGGGAGCTCTCAGTCCGCATGCAGCGGAGCAAGGCAGACAGTCTGGTATCTTATCTGCTGCTTGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS CCA 72 bp | CAGATGAGGTCCAGCGTGCTCCAGCGGCAAATCGCATaGTTTGTGTTGATATTTTCCTGTCAGACAATTTCC | + |
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Preference number: 6 (lower is better) Translates to: QMRSSVLQRQIA*FVLIFSCQTIS Trigger: GGAAATTGTCTGACAGGAAAATATCAACACAAACCATGCGATTTGCCGCTGGAGCACGCTGGACCTCATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS CAA 72 bp | CTGATACACCATCATGTAGTCTCCAGGCCAGTGTGCTaGTTGAAGTTAACAGGTAGCTTTGGAGCTCGAGAG | + |
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Preference number: 6 (lower is better) Translates to: LIHHHVVSRPVC*LKLTGSFGARE Trigger: CTCTCGAGCTCCAAAGCTACCTGTTAACTTCAACAAGCACACTGGCCTGGAGACTACATGATGGTGTATCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000518436.5 ENST00000658685.1 |
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| CDS CAA 90 bp | CAGATGAGGTCCAGCGTGCTCCAGCGGCAAATCGCATGGTTTGTGTaGATATTTTCCTGTCAGACAATTTCCCAAGCAGCAGATAAGATA | + |
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Preference number: 6 (lower is better) Translates to: QMRSSVLQRQIAWFV*IFSCQTISQAADKI Trigger: TATCTTATCTGCTGCTTGGGAAATTGTCTGACAGGAAAATATCAACACAAACCATGCGATTTGCCGCTGGAGCACGCTGGACCTCATCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS GCA 72 bp | TTACTGATACACCATCATGTAGTCTCCAGGCCAGTGTaGTTGTTGAAGTTAACAGGTAGCTCAGTGGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: LLIHHHVVSRPV*LLKLTGSSVEA Trigger: GGCTTCCACTGAGCTACCTGTTAACTTCAACAAGCACACTGGCCTGGAGACTACATGATGGTGTATCAGTAA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000505712.5 ENST00000667644.1 |
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| CDS CAA 72 bp | CTGATACACCATCATGTAGTCTCCAGGCCAGTGTGCTaGTTGAAGTTAACAGGTAGCTGCAGCCATCATAAG | + |
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Preference number: 6 (lower is better) Translates to: LIHHHVVSRPVC*LKLTGSCSHHK Trigger: CTTATGATGGCTGCAGCTACCTGTTAACTTCAACAAGCACACTGGCCTGGAGACTACATGATGGTGTATCAG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000524094.2 |
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| CDS CAA 90 bp | CCATTACTGATACACCATCATGTAGTCTCCAGGCCAGTGTGCTTGTaGAAGTTAACAGGTAGCTGCAGCCATCATAAGATTACCATTGGG | + |
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Preference number: 6 (lower is better) Translates to: PLLIHHHVVSRPVCL*KLTGSCSHHKITIG Trigger: CCCAATGGTAATCTTATGATGGCTGCAGCTACCTGTTAACTTCAACAAGCACACTGGCCTGGAGACTACATGATGGTGTATCAGTAATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000524094.2 |
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| CDS GCA 72 bp | TTACTGATACACCATCATGTAGTCTCCAGGCCAGTGTaGTTGTTGAAGTTAACAGGTAGCTTTGGAGCTCGA | + |
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Preference number: 6 (lower is better) Translates to: LLIHHHVVSRPV*LLKLTGSFGAR Trigger: TCGAGCTCCAAAGCTACCTGTTAACTTCAACAAGCACACTGGCCTGGAGACTACATGATGGTGTATCAGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000518436.5 ENST00000658685.1 |
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| CDS CAA 72 bp | CCTCAAGGGTATCCTTCTGGAGCATCAGAAATGTCTTaGATGGGCAATGATGGAGAGGCACCATTACTGATA | + |
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Preference number: 6 (lower is better) Translates to: PQGYPSGASEMS*MGNDGEAPLLI Trigger: TATCAGTAATGGTGCCTCTCCATCATTGCCCATCAAAGACATTTCTGATGCTCCAGAAGGATACCCTTGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518436.5 |
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| CDS TCA 72 bp | TCCTTCTGGAGCATCAGAAATGTCTTTGATGGGCAATaGTGGAGAGGCACCATTACTGATACACCATCATGT | + |
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Preference number: 6 (lower is better) Translates to: SFWSIRNVFDGQ*WRGTITDTPSC Trigger: ACATGATGGTGTATCAGTAATGGTGCCTCTCCATCATTGCCCATCAAAGACATTTCTGATGCTCCAGAAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518436.5 |
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| CDS TCA 72 bp | CTTTATAAATACCATTGGTTCTCAGTGAACTCCTCCTaGCCTCCTGGTCTGAGACTGTCTCTATGTGATGTA | + |
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Preference number: 6 (lower is better) Translates to: LYKYHWFSVNSS*PPGLRLSLCDV Trigger: TACATCACATAGAGACAGTCTCAGACCAGGAGGTCAGGAGGAGTTCACTGAGAACCAATGGTATTTATAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS CAA 90 bp | AATCCATTACTGATACACCATCATGTAGTCTCCAGGCCAGTGTGCTaGTTGAAGTTAACAGGTAGCTGCAGCCATCATAAGATTACCATT | + |
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Preference number: 6 (lower is better) Translates to: NPLLIHHHVVSRPVC*LKLTGSCSHHKITI Trigger: AATGGTAATCTTATGATGGCTGCAGCTACCTGTTAACTTCAACAAGCACACTGGCCTGGAGACTACATGATGGTGTATCAGTAATGGATT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000524094.2 |
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| CDS CCA 72 bp | CAATATAAAGTAGAAGGGAAGTGCCGATATATTTTGTaGTTCAAGCAGCTGCTATGGACTATCAGCATCACC | + |
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Preference number: 6 (lower is better) Translates to: QYKVEGKCRYIL*FKQLLWTISIT Trigger: GGTGATGCTGATAGTCCATAGCAGCTGCTTGAACCACAAAATATATCGGCACTTCCCTTCTACTTTATATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS TCA 72 bp | TATAGTGATGTTAGAGATCATAATGAATATTGGAGGTaGGAACAGGATGACCTCAAGGGTATCCTTCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: YSDVRDHNEYWR*EQDDLKGILLE Trigger: CTCCAGAAGGATACCCTTGAGGTCATCCTGTTCTCACCTCCAATATTCATTATGATCTCTAACATCACTATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518436.5 |
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| CDS CCA 72 bp | TTTAGAAAAGAATCAGGAACCATGAATCACCATCACTaGGTTCACTTGAGACTGGATTCACTGGGTTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: FRKESGTMNHHH*VHLRLDSLGFS Trigger: AGAAAAACCCAGTGAATCCAGTCTCAAGTGAACCCAGTGATGGTGATTCATGGTTCCTGATTCTTTTCTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000670522.1 |
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| CDS CCA 72 bp | AGTAGAGGCTGGCCATTAACTTTTCTCCTTAATCTCTaGCAAGCCTATATTTCAATTGCCTTTTATAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: SRGWPLTFLLNL*QAYISIAFYSQ Trigger: CTGGCTATAAAAGGCAATTGAAATATAGGCTTGCCAGAGATTAAGGAGAAAAGTTAATGGCCAGCCTCTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000667644.1 |
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| CDS TCA 72 bp | CAGAGACTCATTAATTTGCAATGGGTGCAGTGCTCATaGCATATTAGTGCAAAATTCAAATGTCTTTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: QRLINLQWVQCS*HISAKFKCLCS Trigger: GCTACAAAGACATTTGAATTTTGCACTAATATGTCATGAGCACTGCACCCATTGCAAATTAATGAGTCTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669667.1 |
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| CDS GCA 72 bp | TGCATTTTGATATGCCAATCCTTTACTCTTCAATTCTaGCAAATTTACTTGCTGAACATATTCCACCACGTC | + |
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Preference number: 6 (lower is better) Translates to: CILICQSFTLQF*QIYLLNIFHHV Trigger: GACGTGGTGGAATATGTTCAGCAAGTAAATTTGGCAGAATTGAAGAGTAAAGGATTGGCATATCAAAATGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670522.1 |
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| CDS CAA 72 bp | AAGATGCCGTTTTCTCTGTTTCCAATTTTGGATAAATaGCTAGTCTCCTTGCAAGTAGTAATCTTTACTCAT | + |
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Preference number: 6 (lower is better) Translates to: KMPFSLFPILDK*LVSLQVVIFTH Trigger: ATGAGTAAAGATTACTACTTGCAAGGAGACTAGCAATTTATCCAAAATTGGAAACAGAGAAAACGGCATCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000519336.1 ENST00000660853.1 |
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