Pregenerated sensors for LINC01337 (Homo sapiens)
Ensembl gene IDs: ENSG00000251221Ensembl transcript IDs: ENST00000515871.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAAGATGTTCACTTGCTTCCTCAAAGCCTTGCTAAGGGCTTGTCCTaGGTTTTAGAATCTGGAGATGAAGTTTCTTCATGGCTTTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: QDVHLLPQSLAKGLS*VLESGDEVSSWLSL Trigger: GAGGGAAAGCCATGAAGAAACTTCATCTCCAGATTCTAAAACCCAGGACAAGCCCTTAGCAAGGCTTTGAGGAAGCAAGTGAACATCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS GCA 90 bp | TGGGTTTTAGAATCTGGAGATGAAGTTTCTTCATGGCTTTCCCTCTaGCTGGAATATGTATTTGTTCTTGTCCTGACCCTTAGTCATTGC | + |
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Preference number: 5 (lower is better) Translates to: WVLESGDEVSSWLSL*LEYVFVLVLTLSHC Trigger: GCAATGACTAAGGGTCAGGACAAGAACAAATACATATTCCAGGCAGAGGGAAAGCCATGAAGAAACTTCATCTCCAGATTCTAAAACCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CCA 90 bp | ATATATTTATTATCTCACAACTTCTGTGGCTCAAGATGCTGGCTATaGTTTAGCTGGATCCTGTTCTTAAGGTTTCACAAGACTGTACAA | + |
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Preference number: 5 (lower is better) Translates to: IYLLSHNFCGSRCWL*FSWILFLRFHKTVQ Trigger: TTGTACAGTCTTGTGAAACCTTAAGAACAGGATCCAGCTAAACCATAGCCAGCATCTTGAGCCACAGAAGTTGTGAGATAATAAATATAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CCA 90 bp | AACAACATATATTTATTATCTCACAACTTCTGTGGCTCAAGATGCTaGCTATGGTTTAGCTGGATCCTGTTCTTAAGGTTTCACAAGACT | + |
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Preference number: 5 (lower is better) Translates to: NNIYLLSHNFCGSRC*LWFSWILFLRFHKT Trigger: AGTCTTGTGAAACCTTAAGAACAGGATCCAGCTAAACCATAGCCAGCATCTTGAGCCACAGAAGTTGTGAGATAATAAATATATGTTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CCA 72 bp | AAGATTGAGGTCTTCTGTTTCTTGCTGGCTGTCAGCTaGAAGCTACCCTCACCCCATAGAGGCCATGTTACT | + |
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Preference number: 6 (lower is better) Translates to: KIEVFCFLLAVS*KLPSPHRGHVT Trigger: AGTAACATGGCCTCTATGGGGTGAGGGTAGCTTCCAGCTGACAGCCAGCAAGAAACAGAAGACCTCAATCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CAA 72 bp | TGTTACTTCCTTGTTGGGATTGCCCAAGATGTTCACTaGCTTCCTCAAAGCCTTGCTAAGGGCTTGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: CYFLVGIAQDVH*LPQSLAKGLSW Trigger: CCAGGACAAGCCCTTAGCAAGGCTTTGAGGAAGCAAGTGAACATCTTGGGCAATCCCAACAAGGAAGTAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CAA 72 bp | GGTCTTTGCATCTATAAGATTGAGGTCTTCTGTTTCTaGCTGGCTGTCAGCTGGAAGCTACCCTCACCCCAT | + |
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Preference number: 6 (lower is better) Translates to: GLCIYKIEVFCF*LAVSWKLPSPH Trigger: ATGGGGTGAGGGTAGCTTCCAGCTGACAGCCAGCAAGAAACAGAAGACCTCAATCTTATAGATGCAAAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS GCA 72 bp | GTCTTTGCATCTATAAGATTGAGGTCTTCTGTTTCTTaGTGGCTGTCAGCTGGAAGCTACCCTCACCCCATA | + |
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Preference number: 6 (lower is better) Translates to: VFASIRLRSSVS*WLSAGSYPHPI Trigger: TATGGGGTGAGGGTAGCTTCCAGCTGACAGCCAGCAAGAAACAGAAGACCTCAATCTTATAGATGCAAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CCA 72 bp | TTTGCATCTATAAGATTGAGGTCTTCTGTTTCTTGCTaGCTGTCAGCTGGAAGCTACCCTCACCCCATAGAG | + |
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Preference number: 6 (lower is better) Translates to: FASIRLRSSVSC*LSAGSYPHPIE Trigger: CTCTATGGGGTGAGGGTAGCTTCCAGCTGACAGCCAGCAAGAAACAGAAGACCTCAATCTTATAGATGCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CCA 72 bp | CACTTGCTTCCTCAAAGCCTTGCTAAGGGCTTGTCCTaGGTTTTAGAATCTGGAGATGAAGTTTCTTCATGG | + |
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Preference number: 6 (lower is better) Translates to: HLLPQSLAKGLS*VLESGDEVSSW Trigger: CCATGAAGAAACTTCATCTCCAGATTCTAAAACCCAGGACAAGCCCTTAGCAAGGCTTTGAGGAAGCAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CAA 90 bp | ATTGCCCAAGATGTTCACTTGCTTCCTCAAAGCCTTGCTAAGGGCTaGTCCTGGGTTTTAGAATCTGGAGATGAAGTTTCTTCATGGCTT | + |
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Preference number: 6 (lower is better) Translates to: IAQDVHLLPQSLAKG*SWVLESGDEVSSWL Trigger: AAGCCATGAAGAAACTTCATCTCCAGATTCTAAAACCCAGGACAAGCCCTTAGCAAGGCTTTGAGGAAGCAAGTGAACATCTTGGGCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CAA 72 bp | GATGTTCACTTGCTTCCTCAAAGCCTTGCTAAGGGCTaGTCCTGGGTTTTAGAATCTGGAGATGAAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: DVHLLPQSLAKG*SWVLESGDEVS Trigger: AGAAACTTCATCTCCAGATTCTAAAACCCAGGACAAGCCCTTAGCAAGGCTTTGAGGAAGCAAGTGAACATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CCA 72 bp | TTATCTCACAACTTCTGTGGCTCAAGATGCTGGCTATaGTTTAGCTGGATCCTGTTCTTAAGGTTTCACAAG | + |
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Preference number: 6 (lower is better) Translates to: LSHNFCGSRCWL*FSWILFLRFHK Trigger: CTTGTGAAACCTTAAGAACAGGATCCAGCTAAACCATAGCCAGCATCTTGAGCCACAGAAGTTGTGAGATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CAA 72 bp | ATTATAGGCATAATTCAGGTCTTTGCATCTATAAGATaGAGGTCTTCTGTTTCTTGCTGGCTGTCAGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: IIGIIQVFASIR*RSSVSCWLSAG Trigger: TCCAGCTGACAGCCAGCAAGAAACAGAAGACCTCAATCTTATAGATGCAAAGACCTGAATTATGCCTATAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS GCA 72 bp | ATATATTTATTATCTCACAACTTCTGTGGCTCAAGATaGTGGCTATGGTTTAGCTGGATCCTGTTCTTAAGG | + |
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Preference number: 6 (lower is better) Translates to: IYLLSHNFCGSR*WLWFSWILFLR Trigger: CCTTAAGAACAGGATCCAGCTAAACCATAGCCAGCATCTTGAGCCACAGAAGTTGTGAGATAATAAATATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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| CDS CCA 72 bp | TATTTATTATCTCACAACTTCTGTGGCTCAAGATGCTaGCTATGGTTTAGCTGGATCCTGTTCTTAAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: YLLSHNFCGSRC*LWFSWILFLRF Trigger: AAACCTTAAGAACAGGATCCAGCTAAACCATAGCCAGCATCTTGAGCCACAGAAGTTGTGAGATAATAAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515871.1 |
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