Pregenerated sensors for LINC01327 (Homo sapiens)
Ensembl gene IDs: ENSG00000241669Ensembl transcript IDs: ENST00000498413.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATCCAAGAGCCCTTTCTTGAGGTCTGGGTCTGCACCCCTTTCCTGTaGAACTCTGGCTTATACTCCAGCGCCCATCTCAGTCAATCTTTT | + |
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Preference number: 5 (lower is better) Translates to: IQEPFLEVWVCTPFL*NSGLYSSAHLSQSF Trigger: AAAAGATTGACTGAGATGGGCGCTGGAGTATAAGCCAGAGTTTCACAGGAAAGGGGTGCAGACCCAGACCTCAAGAAAGGGCTCTTGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000498413.1 |
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| CDS GCA 90 bp | ATTCATATTCCCTTGGTGATAACTAGGTCACATTCCAGAGACAGCTaGAAAGGAGTCTGGAAAATGGAGTCTCCAGCTGGGCGGCCCCAT | + |
|
Preference number: 5 (lower is better) Translates to: IHIPLVITRSHSRDS*KGVWKMESPAGRPH Trigger: ATGGGGCCGCCCAGCTGGAGACTCCATTTTCCAGACTCCTTTGCAGCTGTCTCTGGAATGTGACCTAGTTATCACCAAGGGAATATGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000498413.1 |
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| CDS TCA 90 bp | AGTATTCTAATGAACTTGCTTTCACTTTACTCTATGGACTCGCCCTaGATTCCTTCTTACACGAGATCCAAGAGCCCTTTCTTGAGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: SILMNLLSLYSMDSP*IPSYTRSKSPFLRS Trigger: AGACCTCAAGAAAGGGCTCTTGGATCTCGTGTAAGAAGGAATTCAGGGCGAGTCCATAGAGTAAAGTGAAAGCAAGTTCATTAGAATACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000498413.1 |
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| CDS TCA 90 bp | GGAAAAGAACAGATGTTGAGGGCAAGCAATTTGCTTTTAAACCGATaGAGCAGAAATTGCGCTTATCATTTCCATTCATATTCCCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: GKEQMLRASNLLLNR*SRNCAYHFHSYSLG Trigger: ACCAAGGGAATATGAATGGAAATGATAAGCGCAATTTCTGCTTCATCGGTTTAAAAGCAAATTGCTTGCCCTCAACATCTGTTCTTTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000498413.1 |
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| CDS TCA 72 bp | CCCTTTCTTGAGGTCTGGGTCTGCACCCCTTTCCTGTaGAACTCTGGCTTATACTCCAGCGCCCATCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: PFLEVWVCTPFL*NSGLYSSAHLS Trigger: ACTGAGATGGGCGCTGGAGTATAAGCCAGAGTTTCACAGGAAAGGGGTGCAGACCCAGACCTCAAGAAAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000498413.1 |
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| CDS CCA 72 bp | CACATTCCAGAGACAGCTGCAAAGGAGTCTGGAAAATaGAGTCTCCAGCTGGGCGGCCCCATACCTTGTTTG | + |
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Preference number: 6 (lower is better) Translates to: HIPETAAKESGK*SLQLGGPIPCL Trigger: CAAACAAGGTATGGGGCCGCCCAGCTGGAGACTCCATTTTCCAGACTCCTTTGCAGCTGTCTCTGGAATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000498413.1 |
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| CDS CAA 72 bp | AAATGGAGTCTCCAGCTGGGCGGCCCCATACCTTGTTaGAACTCTAGTATTCTAATGAACTTGCTTTCACTT | + |
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Preference number: 6 (lower is better) Translates to: KWSLQLGGPIPC*NSSILMNLLSL Trigger: AAGTGAAAGCAAGTTCATTAGAATACTAGAGTTCAAACAAGGTATGGGGCCGCCCAGCTGGAGACTCCATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000498413.1 |
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| CDS CAA 90 bp | ACCGATGAAGCAGAAATTGCGCTTATCATTTCCATTCATATTCCCTaGGTGATAACTAGGTCACATTCCAGAGACAGCTGCAAAGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: TDEAEIALIISIHIP*VITRSHSRDSCKGV Trigger: GACTCCTTTGCAGCTGTCTCTGGAATGTGACCTAGTTATCACCAAGGGAATATGAATGGAAATGATAAGCGCAATTTCTGCTTCATCGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000498413.1 |
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| CDS CAA 72 bp | GCAGAAATTGCGCTTATCATTTCCATTCATATTCCCTaGGTGATAACTAGGTCACATTCCAGAGACAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: AEIALIISIHIP*VITRSHSRDSC Trigger: GCAGCTGTCTCTGGAATGTGACCTAGTTATCACCAAGGGAATATGAATGGAAATGATAAGCGCAATTTCTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000498413.1 |
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