Pregenerated sensors for LINC01312 (Homo sapiens)
Ensembl gene IDs: ENSG00000223586Ensembl transcript IDs: ENST00000412745.1, ENST00000456347.5, ENST00000662850.1, ENST00000669925.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGAGTTACTAGCACTAGAATTGGGAAAGAAGACCTGGAAGGTGCCTaGGTTGCTGAAGAGCTCTTGAAGCCACTGCATCAGCCTGGACTG | + |
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Preference number: 5 (lower is better) Translates to: GVTSTRIGKEDLEGA*VAEELLKPLHQPGL Trigger: CAGTCCAGGCTGATGCAGTGGCTTCAAGAGCTCTTCAGCAACCCAGGCACCTTCCAGGTCTTCTTTCCCAATTCTAGTGCTAGTAACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456347.5 ENST00000669925.1 |
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| CDS CCA 90 bp | AAAGTGAGCGTGCATGCCCTTCTTTTCTCCCTCTGTCTGGTTTCCTaGAACTCAGATGTACACGTGATGTCTGGAGCTCTGGTAGCCATG | + |
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Preference number: 5 (lower is better) Translates to: KVSVHALLFSLCLVS*NSDVHVMSGALVAM Trigger: CATGGCTACCAGAGCTCCAGACATCACGTGTACATCTGAGTTCCAGGAAACCAGACAGAGGGAGAAAAGAAGGGCATGCACGCTCACTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456347.5 ENST00000669925.1 |
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| CDS GCA 90 bp | TCACAAGTGTTCTTAAGTCAACTGGGAGGACAAAGATTGCGTGAGTaGTTGGCTTATATGGTTTCATTTCTGTTTTCCAGTTGTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: SQVFLSQLGGQRLRE*LAYMVSFLFSSCHC Trigger: ACAATGACAACTGGAAAACAGAAATGAAACCATATAAGCCAAGCACTCACGCAATCTTTGTCCTCCCAGTTGACTTAAGAACACTTGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000412745.1 ENST00000456347.5 ENST00000662850.1 ENST00000669925.1 |
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| CDS GCA 90 bp | TTTTCCTGTTCATTTACCAGGCTGAGAGTTGTTTTCTCTGATACATaGATGTGGTTTATCTCTAAGAAGTACCATCGGAATGAAGAGTTG | + |
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Preference number: 5 (lower is better) Translates to: FSCSFTRLRVVFSDT*MWFISKKYHRNEEL Trigger: CAACTCTTCATTCCGATGGTACTTCTTAGAGATAAACCACATGCATGTATCAGAGAAAACAACTCTCAGCCTGGTAAATGAACAGGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412745.1 |
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| CDS TCA 90 bp | AGAAATAGAATTCTAACCCAAGTTTTTCCTGTTCATTTACCAGGCTaGGAGTTGTTTTCTCTGATACATGCATGTGGTTTATCTCTAAGA | + |
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Preference number: 5 (lower is better) Translates to: RNRILTQVFPVHLPG*ELFSLIHACGLSLR Trigger: TCTTAGAGATAAACCACATGCATGTATCAGAGAAAACAACTCTCAGCCTGGTAAATGAACAGGAAAAACTTGGGTTAGAATTCTATTTCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000412745.1 |
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| CDS CAA 72 bp | GAAGACCTGGAAGGTGCCTGGGTTGCTGAAGAGCTCTaGAAGCCACTGCATCAGCCTGGACTGCTGAATATC | + |
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Preference number: 6 (lower is better) Translates to: EDLEGAWVAEEL*KPLHQPGLLNI Trigger: GATATTCAGCAGTCCAGGCTGATGCAGTGGCTTCAAGAGCTCTTCAGCAACCCAGGCACCTTCCAGGTCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456347.5 ENST00000669925.1 |
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| CDS CAA 90 bp | ATTGGGAAAGAAGACCTGGAAGGTGCCTGGGTTGCTGAAGAGCTCTaGAAGCCACTGCATCAGCCTGGACTGCTGAATATCAGTTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: IGKEDLEGAWVAEEL*KPLHQPGLLNISFL Trigger: AAGAAAACTGATATTCAGCAGTCCAGGCTGATGCAGTGGCTTCAAGAGCTCTTCAGCAACCCAGGCACCTTCCAGGTCTTCTTTCCCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456347.5 ENST00000669925.1 |
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| CDS CAA 90 bp | GTAGCCATGTTGGGTGATGAGATGAAGGAGTTACTAGCACTAGAATaGGGAAAGAAGACCTGGAAGGTGCCTGGGTTGCTGAAGAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: VAMLGDEMKELLALE*GKKTWKVPGLLKSS Trigger: AGAGCTCTTCAGCAACCCAGGCACCTTCCAGGTCTTCTTTCCCAATTCTAGTGCTAGTAACTCCTTCATCTCATCACCCAACATGGCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456347.5 ENST00000669925.1 |
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| CDS CAA 72 bp | TTGGGTGATGAGATGAAGGAGTTACTAGCACTAGAATaGGGAAAGAAGACCTGGAAGGTGCCTGGGTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LGDEMKELLALE*GKKTWKVPGLL Trigger: CAGCAACCCAGGCACCTTCCAGGTCTTCTTTCCCAATTCTAGTGCTAGTAACTCCTTCATCTCATCACCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456347.5 ENST00000669925.1 |
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| CDS CAA 90 bp | TGGAACTCAGATGTACACGTGATGTCTGGAGCTCTGGTAGCCATGTaGGGTGATGAGATGAAGGAGTTACTAGCACTAGAATTGGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: WNSDVHVMSGALVAM*GDEMKELLALELGK Trigger: CTTTCCCAATTCTAGTGCTAGTAACTCCTTCATCTCATCACCCAACATGGCTACCAGAGCTCCAGACATCACGTGTACATCTGAGTTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456347.5 ENST00000669925.1 |
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| CDS TCA 72 bp | GCATCTTGTTTAGGCCAGCAGGTTGTACTTTCAAGTTaGGTTCTCCGGGCTTCAACTTCTCCATCTGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: ASCLGQQVVLSS*VLRASTSPSGK Trigger: CTTTCCAGATGGAGAAGTTGAAGCCCGGAGAACTCAACTTGAAAGTACAACCTGCTGGCCTAAACAAGATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000662850.1 ENST00000669925.1 |
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| CDS CAA 72 bp | AGCATCTTGTTTAGGCCAGCAGGTTGTACTTTCAAGTaGAGTTCTCCGGGCTTCAACTTCTCCATCTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: SILFRPAGCTFK*SSPGFNFSIWK Trigger: TTTCCAGATGGAGAAGTTGAAGCCCGGAGAACTCAACTTGAAAGTACAACCTGCTGGCCTAAACAAGATGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000662850.1 ENST00000669925.1 |
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| CDS TCA 72 bp | CTTCTCCATCTGGAAAGTAGGGACACCAACAGTTCCTaGGATCTAAAGACGCCACATTTTCTTCACAAGTGT | + |
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Preference number: 6 (lower is better) Translates to: LLHLESRDTNSS*DLKTPHFLHKC Trigger: ACACTTGTGAAGAAAATGTGGCGTCTTTAGATCTCAGGAACTGTTGGTGTCCCTACTTTCCAGATGGAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000662850.1 ENST00000669925.1 |
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| CDS CAA 72 bp | TCACAAGTGTTCTTAAGTCAACTGGGAGGACAAAGATaGCGTGAGTGCTTGGCTTATATGGTTTCATTTCTG | + |
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Preference number: 6 (lower is better) Translates to: SQVFLSQLGGQR*RECLAYMVSFL Trigger: CAGAAATGAAACCATATAAGCCAAGCACTCACGCAATCTTTGTCCTCCCAGTTGACTTAAGAACACTTGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000412745.1 ENST00000456347.5 ENST00000662850.1 ENST00000669925.1 |
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| CDS CAA 90 bp | CAAGTGTTCTTAAGTCAACTGGGAGGACAAAGATTGCGTGAGTGCTaGGCTTATATGGTTTCATTTCTGTTTTCCAGTTGTCATTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: QVFLSQLGGQRLREC*AYMVSFLFSSCHCR Trigger: CCTACAATGACAACTGGAAAACAGAAATGAAACCATATAAGCCAAGCACTCACGCAATCTTTGTCCTCCCAGTTGACTTAAGAACACTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000412745.1 ENST00000456347.5 ENST00000662850.1 ENST00000669925.1 |
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| CDS TCA 72 bp | GATAGTGCCATGCATGGCTTGGTCTGTATGTCCATGTaGGATTATGAAAATTTGCTCTCTACCTTGAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: DSAMHGLVCMSM*DYENLLSTLKE Trigger: TTCTTTCAAGGTAGAGAGCAAATTTTCATAATCTCACATGGACATACAGACCAAGCCATGCATGGCACTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412745.1 |
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| CDS GCA 72 bp | TTCTTAAGTCAACTGGGAGGACAAAGATTGCGTGAGTaGTTGGCTTATATGGTTTCATTTCTGTTTTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: FLSQLGGQRLRE*LAYMVSFLFSS Trigger: ACTGGAAAACAGAAATGAAACCATATAAGCCAAGCACTCACGCAATCTTTGTCCTCCCAGTTGACTTAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000412745.1 ENST00000456347.5 ENST00000662850.1 ENST00000669925.1 |
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| CDS CAA 72 bp | CATCGGAATGAAGAGTTGTCTATTTATTTGAACCAGTaGGAAACAAGGGATCTGAGATCTAAAGACGCCACA | + |
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Preference number: 6 (lower is better) Translates to: HRNEELSIYLNQ*ETRDLRSKDAT Trigger: TGTGGCGTCTTTAGATCTCAGATCCCTTGTTTCCAACTGGTTCAAATAAATAGACAACTCTTCATTCCGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412745.1 ENST00000456347.5 |
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| CDS GCA 72 bp | TCATTTACCAGGCTGAGAGTTGTTTTCTCTGATACATaGATGTGGTTTATCTCTAAGAAGTACCATCGGAAT | + |
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Preference number: 6 (lower is better) Translates to: SFTRLRVVFSDT*MWFISKKYHRN Trigger: ATTCCGATGGTACTTCTTAGAGATAAACCACATGCATGTATCAGAGAAAACAACTCTCAGCCTGGTAAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412745.1 |
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| CDS CAA 90 bp | TTTATCTCTAAGAAGTACCATCGGAATGAAGAGTTGTCTATTTATTaGAACCAGTTGGAAACAAGGGATCTGAGATCTAAAGACGCCACA | + |
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Preference number: 6 (lower is better) Translates to: FISKKYHRNEELSIY*NQLETRDLRSKDAT Trigger: TGTGGCGTCTTTAGATCTCAGATCCCTTGTTTCCAACTGGTTCAAATAAATAGACAACTCTTCATTCCGATGGTACTTCTTAGAGATAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412745.1 ENST00000456347.5 |
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| CDS CAA 90 bp | ACATGCATGTGGTTTATCTCTAAGAAGTACCATCGGAATGAAGAGTaGTCTATTTATTTGAACCAGTTGGAAACAAGGGATCTGAGATCT | + |
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Preference number: 6 (lower is better) Translates to: TCMWFISKKYHRNEE*SIYLNQLETRDLRS Trigger: AGATCTCAGATCCCTTGTTTCCAACTGGTTCAAATAAATAGACAACTCTTCATTCCGATGGTACTTCTTAGAGATAAACCACATGCATGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412745.1 ENST00000456347.5 |
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| CDS CCA 72 bp | GTACATTCCATGTATCAAGTAATGTACAAGATTCTGTaGACTTTTATGATTTGCATGCCTCTCATTCGTCTC | + |
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Preference number: 6 (lower is better) Translates to: VHSMYQVMYKIL*TFMICMPLIRL Trigger: GAGACGAATGAGAGGCATGCAAATCATAAAAGTCCACAGAATCTTGTACATTACTTGATACATGGAATGTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000662850.1 ENST00000669925.1 |
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| CDS CAA 72 bp | TGGTTTATCTCTAAGAAGTACCATCGGAATGAAGAGTaGTCTATTTATTTGAACCAGTTGGAAACAAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: WFISKKYHRNEE*SIYLNQLETRD Trigger: ATCCCTTGTTTCCAACTGGTTCAAATAAATAGACAACTCTTCATTCCGATGGTACTTCTTAGAGATAAACCA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412745.1 ENST00000456347.5 |
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