Pregenerated sensors for LINC01309 (Homo sapiens)
Ensembl gene IDs: ENSG00000234551Ensembl transcript IDs: ENST00000444795.2, ENST00000667000.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTGGCAGGGTTGGTTTCTTACAGAAAGGCCTCTCTCCTTGAGGGTTaGTTTCTTACGGACAGGCCTCTCTCTTGGTCTTGTAGATGGTCA | + |
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Preference number: 5 (lower is better) Translates to: LAGLVSYRKASLLEG*FLTDRPLSWSCRWS Trigger: TGACCATCTACAAGACCAAGAGAGAGGCCTGTCCGTAAGAAACCAACCCTCAAGGAGAGAGGCCTTTCTGTAAGAAACCAACCCTGCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS GCA 90 bp | GAGAGACAGCCTAGGGACTCACACTCATCATGGAGAAGCCTGAACTaGATCTTGAGATTTGCCAGTGTTTCCAGAGCAATCCAAGCATTG | + |
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Preference number: 5 (lower is better) Translates to: ERQPRDSHSSWRSLN*ILRFASVSRAIQAL Trigger: CAATGCTTGGATTGCTCTGGAAACACTGGCAAATCTCAAGATGCAGTTCAGGCTTCTCCATGATGAGTGTGAGTCCCTAGGCTGTCTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CCA 90 bp | ACATTTCTGGAGACTAGAGCTCCAAAAGCTGGGTGCTGGCAGGGTTaGTTTCTTACAGAAAGGCCTCTCTCCTTGAGGGTTGGTTTCTTA | + |
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Preference number: 5 (lower is better) Translates to: TFLETRAPKAGCWQG*FLTERPLSLRVGFL Trigger: TAAGAAACCAACCCTCAAGGAGAGAGGCCTTTCTGTAAGAAACCAACCCTGCCAGCACCCAGCTTTTGGAGCTCTAGTCTCCAGAAATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS GCA 90 bp | GAAATTTATTTCACATTTCTGGAGACTAGAGCTCCAAAAGCTGGGTaGTGGCAGGGTTGGTTTCTTACAGAAAGGCCTCTCTCCTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: EIYFTFLETRAPKAG*WQGWFLTERPLSLR Trigger: CCTCAAGGAGAGAGGCCTTTCTGTAAGAAACCAACCCTGCCAGCACCCAGCTTTTGGAGCTCTAGTCTCCAGAAATGTGAAATAAATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CCA 90 bp | ATTTATTTCACATTTCTGGAGACTAGAGCTCCAAAAGCTGGGTGCTaGCAGGGTTGGTTTCTTACAGAAAGGCCTCTCTCCTTGAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: IYFTFLETRAPKAGC*QGWFLTERPLSLRV Trigger: AACCCTCAAGGAGAGAGGCCTTTCTGTAAGAAACCAACCCTGCCAGCACCCAGCTTTTGGAGCTCTAGTCTCCAGAAATGTGAAATAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS GCA 90 bp | AGTAAGCCCCAAATATTTTATTTCTTTATAACCTCCACAGTGTCATaGAGTACAGTAAACGCACAGCACATGCCTGTGGGAAAGATGAGT | + |
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Preference number: 5 (lower is better) Translates to: SKPQIFYFFITSTVS*STVNAQHMPVGKMS Trigger: ACTCATCTTTCCCACAGGCATGTGCTGTGCGTTTACTGTACTGCATGACACTGTGGAGGTTATAAAGAAATAAAATATTTGGGGCTTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS TCA 72 bp | GGCAGGGTTGGTTTCTTACAGAAAGGCCTCTCTCCTTaGGGGTTGGTTTCTTACGGACAGGCCTCTCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: GRVGFLQKGLSP*GLVSYGQASLL Trigger: CAAGAGAGAGGCCTGTCCGTAAGAAACCAACCCTCAAGGAGAGAGGCCTTTCTGTAAGAAACCAACCCTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CCA 72 bp | GAGACTAGAGCTCCAAAAGCTGGGTGCTGGCAGGGTTaGTTTCTTACAGAAAGGCCTCTCTCCTTGAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: ETRAPKAGCWQG*FLTERPLSLRV Trigger: AACCCTCAAGGAGAGAGGCCTTTCTGTAAGAAACCAACCCTGCCAGCACCCAGCTTTTGGAGCTCTAGTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CCA 72 bp | ACATTTCTGGAGACTAGAGCTCCAAAAGCTGGGTGCTaGCAGGGTTGGTTTCTTACAGAAAGGCCTCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: TFLETRAPKAGC*QGWFLTERPLS Trigger: GGAGAGAGGCCTTTCTGTAAGAAACCAACCCTGCCAGCACCCAGCTTTTGGAGCTCTAGTCTCCAGAAATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CAA 90 bp | CAGCCTAGGGACTCACACTCATCATGGAGAAGCCTGAACTGCATCTaGAGATTTGCCAGTGTTTCCAGAGCAATCCAAGCATTGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: QPRDSHSSWRSLNCI*RFASVSRAIQALLQ Trigger: CTGGAGCAATGCTTGGATTGCTCTGGAAACACTGGCAAATCTCAAGATGCAGTTCAGGCTTCTCCATGATGAGTGTGAGTCCCTAGGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS GCA 72 bp | TTCACATTTCTGGAGACTAGAGCTCCAAAAGCTGGGTaGTGGCAGGGTTGGTTTCTTACAGAAAGGCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: FTFLETRAPKAG*WQGWFLTERPL Trigger: GAGAGGCCTTTCTGTAAGAAACCAACCCTGCCAGCACCCAGCTTTTGGAGCTCTAGTCTCCAGAAATGTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS GCA 72 bp | CCTAGGGACTCACACTCATCATGGAGAAGCCTGAACTaGATCTTGAGATTTGCCAGTGTTTCCAGAGCAATC | + |
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Preference number: 6 (lower is better) Translates to: PRDSHSSWRSLN*ILRFASVSRAI Trigger: GATTGCTCTGGAAACACTGGCAAATCTCAAGATGCAGTTCAGGCTTCTCCATGATGAGTGTGAGTCCCTAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CCA 72 bp | TGTTGCCTTGTCGAAGACTCTTTAGAGTTGCCTGGCTaGGGAATCTTTAGTTTGAGAGACAGCCTAGGGACT | + |
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Preference number: 6 (lower is better) Translates to: CCLVEDSLELPG*GIFSLRDSLGT Trigger: AGTCCCTAGGCTGTCTCTCAAACTAAAGATTCCCCAGCCAGGCAACTCTAAAGAGTCTTCGACAAGGCAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CCA 72 bp | TTGGTTTCTTACAGAAAGGCCTCTCTCCTTGAGGGTTaGTTTCTTACGGACAGGCCTCTCTCTTGGTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: LVSYRKASLLEG*FLTDRPLSWSC Trigger: ACAAGACCAAGAGAGAGGCCTGTCCGTAAGAAACCAACCCTCAAGGAGAGAGGCCTTTCTGTAAGAAACCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CAA 72 bp | GACTCTTTAGAGTTGCCTGGCTGGGGAATCTTTAGTTaGAGAGACAGCCTAGGGACTCACACTCATCATGGA | + |
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Preference number: 6 (lower is better) Translates to: DSLELPGWGIFS*RDSLGTHTHHG Trigger: TCCATGATGAGTGTGAGTCCCTAGGCTGTCTCTCAAACTAAAGATTCCCCAGCCAGGCAACTCTAAAGAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CAA 90 bp | CCAGTGTTTCCAGAGCAATCCAAGCATTGCTCCAGCAGTGTGAAGTaGTGTCAGGGAAATAAAAAGCCAAGGTCTCCAGTAGACCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: PVFPEQSKHCSSSVK*CQGNKKPRSPVDPV Trigger: AACAGGGTCTACTGGAGACCTTGGCTTTTTATTTCCCTGACACAACTTCACACTGCTGGAGCAATGCTTGGATTGCTCTGGAAACACTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS TCA 72 bp | CACTGCAGAAGCTTCTTCTGCAAGGACAGTCTATGGTaGGGTGGTAATCCTCTCCATAATACACGGTTAGCT | + |
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Preference number: 6 (lower is better) Translates to: HCRSFFCKDSLW*GGNPLHNTRLA Trigger: AGCTAACCGTGTATTATGGAGAGGATTACCACCTCACCATAGACTGTCCTTGCAGAAGAAGCTTCTGCAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000444795.2 |
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| CDS GCA 72 bp | CTCATCATGGAGAAGCCTGAACTGCATCTTGAGATTTaGCAGTGTTTCCAGAGCAATCCAAGCATTGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LIMEKPELHLEI*QCFQSNPSIAP Trigger: TGGAGCAATGCTTGGATTGCTCTGGAAACACTGGCAAATCTCAAGATGCAGTTCAGGCTTCTCCATGATGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CAA 72 bp | CCAGAGCAATCCAAGCATTGCTCCAGCAGTGTGAAGTaGTGTCAGGGAAATAAAAAGCCAAGGTCTCCAGTA | + |
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Preference number: 6 (lower is better) Translates to: PEQSKHCSSSVK*CQGNKKPRSPV Trigger: TACTGGAGACCTTGGCTTTTTATTTCCCTGACACAACTTCACACTGCTGGAGCAATGCTTGGATTGCTCTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS CAA 72 bp | GACTCACACTCATCATGGAGAAGCCTGAACTGCATCTaGAGATTTGCCAGTGTTTCCAGAGCAATCCAAGCA | + |
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Preference number: 6 (lower is better) Translates to: DSHSSWRSLNCI*RFASVSRAIQA Trigger: TGCTTGGATTGCTCTGGAAACACTGGCAAATCTCAAGATGCAGTTCAGGCTTCTCCATGATGAGTGTGAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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| CDS TCA 72 bp | TGTTTCCAGAGCAATCCAAGCATTGCTCCAGCAGTGTaGAGTTGTGTCAGGGAAATAAAAAGCCAAGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: CFQSNPSIAPAV*SCVREIKSQGL Trigger: GAGACCTTGGCTTTTTATTTCCCTGACACAACTTCACACTGCTGGAGCAATGCTTGGATTGCTCTGGAAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000444795.2 ENST00000667000.1 |
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