Pregenerated sensors for LINC01307 (Homo sapiens)
Ensembl gene IDs: ENSG00000231671Ensembl transcript IDs: ENST00000439146.1, ENST00000444327.1, ENST00000454466.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGGGAGGATCTGTTCCAGGCCAGGCCTCTCTCCTTAGCATGTAGATaGCCATCTTCTCTCCGTGTCTTCACATCATCTTCCCTCTGTACA | + |
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Preference number: 5 (lower is better) Translates to: REDLFQARPLSLACR*PSSLRVFTSSSLCT Trigger: TGTACAGAGGGAAGATGATGTGAAGACACGGAGAGAAGATGGCCATCTACATGCTAAGGAGAGAGGCCTGGCCTGGAACAGATCCTCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439146.1 |
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| CDS TCA 90 bp | CAGAGTCCCGGCCATGTGTCAGGAGGAGATGTGAGGCATTATGAATaGAGACAGGAGTTACAACCAAACATGCAGAAGACAAGCTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: QSPGHVSGGDVRHYE*RQELQPNMQKTSSN Trigger: ATTGGAGCTTGTCTTCTGCATGTTTGGTTGTAACTCCTGTCTTCATTCATAATGCCTCACATCTCCTCCTGACACATGGCCGGGACTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000444327.1 |
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| CDS TCA 90 bp | CAAACAGAGTCCCGGCCATGTGTCAGGAGGAGATGTGAGGCATTATaGATGAAGACAGGAGTTACAACCAAACATGCAGAAGACAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: QTESRPCVRRRCEAL*MKTGVTTKHAEDKL Trigger: GAGCTTGTCTTCTGCATGTTTGGTTGTAACTCCTGTCTTCATTCATAATGCCTCACATCTCCTCCTGACACATGGCCGGGACTCTGTTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000444327.1 |
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| CDS CCA 90 bp | ATGGTTCTTGAGGCTCAAAATCTGAGATCAAGGTGTCATCAAGATTaGTTCTTTCTGATGATCATGAGGGAGGATCTGTTCCAGGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: MVLEAQNLRSRCHQD*FFLMIMREDLFQAR Trigger: CCTGGCCTGGAACAGATCCTCCCTCATGATCATCAGAAAGAACCAATCTTGATGACACCTTGATCTCAGATTTTGAGCCTCAAGAACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439146.1 |
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| CDS CCA 90 bp | AAGATTAAAGCACACATAAGCCACAGTCAGTTCTCCAAATCTCACTaGCAAGCAGGGGAACTTCACAGGAAGGGTATTTCCAACAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: KIKAHISHSQFSKSH*QAGELHRKGISNRR Trigger: TCTTCTGTTGGAAATACCCTTCCTGTGAAGTTCCCCTGCTTGCCAGTGAGATTTGGAGAACTGACTGTGGCTTATGTGTGCTTTAATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000454466.1 |
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| CDS TCA 90 bp | ATGAAGACAGGAGTTACAACCAAACATGCAGAAGACAAGCTCCAATaGTATCTCACTGTCTGCTCACTTTTCACCAGCACTATCCAGAGA | + |
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Preference number: 5 (lower is better) Translates to: MKTGVTTKHAEDKLQ*YLTVCSLFTSTIQR Trigger: TCTCTGGATAGTGCTGGTGAAAAGTGAGCAGACAGTGAGATATCATTGGAGCTTGTCTTCTGCATGTTTGGTTGTAACTCCTGTCTTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000444327.1 |
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| CDS TCA 90 bp | TGTACCCAGGTAACAAAGCTGTACATGTACCTCCTGGATGGTTCTTaGGGCTCAAAATCTGAGATCAAGGTGTCATCAAGATTGGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: CTQVTKLYMYLLDGS*GSKSEIKVSSRLVL Trigger: AAGAACCAATCTTGATGACACCTTGATCTCAGATTTTGAGCCTCAAGAACCATCCAGGAGGTACATGTACAGCTTTGTTACCTGGGTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439146.1 |
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| CDS CCA 90 bp | AGTCAAGCAGCATATGAAACTGCCTCTGGCAAGATGCCTGTTCAGTaGGTCAACTGGCATATCATACATATCATACTGCTGGAAATAAGA | + |
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Preference number: 5 (lower is better) Translates to: SQAAYETASGKMPVQ*VNWHIIHIILLEIR Trigger: TCTTATTTCCAGCAGTATGATATGTATGATATGCCAGTTGACCCACTGAACAGGCATCTTGCCAGAGGCAGTTTCATATGCTGCTTGACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000444327.1 |
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| CDS TCA 90 bp | ATCACCTGCACTGACAGGAACCATTTCTCTTGTTTAACTCTTGAATaGTTCACGTGGGAGCTGAGTGACAGGATCATTCATACTCAAACT | + |
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Preference number: 5 (lower is better) Translates to: ITCTDRNHFSCLTLE*FTWELSDRIIHTQT Trigger: AGTTTGAGTATGAATGATCCTGTCACTCAGCTCCCACGTGAATCATTCAAGAGTTAAACAAGAGAAATGGTTCCTGTCAGTGCAGGTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439146.1 |
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| CDS CCA 72 bp | CTGTTCCAGGCCAGGCCTCTCTCCTTAGCATGTAGATaGCCATCTTCTCTCCGTGTCTTCACATCATCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LFQARPLSLACR*PSSLRVFTSSS Trigger: GGAAGATGATGTGAAGACACGGAGAGAAGATGGCCATCTACATGCTAAGGAGAGAGGCCTGGCCTGGAACAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439146.1 |
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| CDS CCA 72 bp | GCACACATAAGCCACAGTCAGTTCTCCAAATCTCACTaGCAAGCAGGGGAACTTCACAGGAAGGGTATTTCC | + |
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Preference number: 6 (lower is better) Translates to: AHISHSQFSKSH*QAGELHRKGIS Trigger: GGAAATACCCTTCCTGTGAAGTTCCCCTGCTTGCCAGTGAGATTTGGAGAACTGACTGTGGCTTATGTGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000454466.1 |
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| CDS TCA 72 bp | GGCCATGTGTCAGGAGGAGATGTGAGGCATTATGAATaGAGACAGGAGTTACAACCAAACATGCAGAAGACA | + |
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Preference number: 6 (lower is better) Translates to: GHVSGGDVRHYE*RQELQPNMQKT Trigger: TGTCTTCTGCATGTTTGGTTGTAACTCCTGTCTTCATTCATAATGCCTCACATCTCCTCCTGACACATGGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000444327.1 |
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| CDS CCA 72 bp | GCATATGAAACTGCCTCTGGCAAGATGCCTGTTCAGTaGGTCAACTGGCATATCATACATATCATACTGCTG | + |
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Preference number: 6 (lower is better) Translates to: AYETASGKMPVQ*VNWHIIHIILL Trigger: CAGCAGTATGATATGTATGATATGCCAGTTGACCCACTGAACAGGCATCTTGCCAGAGGCAGTTTCATATGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000444327.1 |
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| CDS TCA 72 bp | GGAGTTACAACCAAACATGCAGAAGACAAGCTCCAATaGTATCTCACTGTCTGCTCACTTTTCACCAGCACT | + |
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Preference number: 6 (lower is better) Translates to: GVTTKHAEDKLQ*YLTVCSLFTST Trigger: AGTGCTGGTGAAAAGTGAGCAGACAGTGAGATATCATTGGAGCTTGTCTTCTGCATGTTTGGTTGTAACTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000444327.1 |
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| CDS TCA 72 bp | GTAACAAAGCTGTACATGTACCTCCTGGATGGTTCTTaGGGCTCAAAATCTGAGATCAAGGTGTCATCAAGA | + |
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Preference number: 6 (lower is better) Translates to: VTKLYMYLLDGS*GSKSEIKVSSR Trigger: TCTTGATGACACCTTGATCTCAGATTTTGAGCCTCAAGAACCATCCAGGAGGTACATGTACAGCTTTGTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439146.1 |
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| CDS CCA 72 bp | GAGGCTCAAAATCTGAGATCAAGGTGTCATCAAGATTaGTTCTTTCTGATGATCATGAGGGAGGATCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: EAQNLRSRCHQD*FFLMIMREDLF Trigger: GAACAGATCCTCCCTCATGATCATCAGAAAGAACCAATCTTGATGACACCTTGATCTCAGATTTTGAGCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439146.1 |
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| CDS TCA 72 bp | ACTGACAGGAACCATTTCTCTTGTTTAACTCTTGAATaGTTCACGTGGGAGCTGAGTGACAGGATCATTCAT | + |
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Preference number: 6 (lower is better) Translates to: TDRNHFSCLTLE*FTWELSDRIIH Trigger: ATGAATGATCCTGTCACTCAGCTCCCACGTGAATCATTCAAGAGTTAAACAAGAGAAATGGTTCCTGTCAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439146.1 |
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| CDS GCA 72 bp | TCTCTCCGTGTCTTCACATCATCTTCCCTCTGTACATaGAGCCAATGTATTAATATCCCATGTTTCTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: SLRVFTSSSLCT*SQCINIPCFFQ Trigger: TTGGAAGAAACATGGGATATTAATACATTGGCTGCATGTACAGAGGGAAGATGATGTGAAGACACGGAGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439146.1 |
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| CDS GCA 72 bp | ACCTTCAGTTATGTTGTAATGATCTCTTTCATCACCTaGACTGACAGGAACCATTTCTCTTGTTTAACTCTT | + |
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Preference number: 6 (lower is better) Translates to: TFSYVVMISFIT*TDRNHFSCLTL Trigger: AAGAGTTAAACAAGAGAAATGGTTCCTGTCAGTGCAGGTGATGAAAGAGATCATTACAACATAACTGAAGGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000439146.1 ENST00000444327.1 ENST00000454466.1 |
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