Pregenerated sensors for LINC01300 (Homo sapiens)
Ensembl gene IDs: ENSG00000253595Ensembl transcript IDs: ENST00000518232.1, ENST00000521073.6, ENST00000631938.1, ENST00000633884.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAAGTGGAGATGCGGCTCCAGCCCGTTCTGAGCAATCCATCAGTGTaGCTGCCCCTGGAACGTGCGGGGGCACCAAGGCGGAGTTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: EVEMRLQPVLSNPSV*LPLERAGAPRRSCR Trigger: TCTGCAACTCCGCCTTGGTGCCCCCGCACGTTCCAGGGGCAGCCACACTGATGGATTGCTCAGAACGGGCTGGAGCCGCATCTCCACTTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000518232.1 ENST00000521073.6 ENST00000631938.1 ENST00000633884.1 |
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| CDS TCA 90 bp | GACAATCCCTGCCCTCAAGGAGCCCGCAGCTGCAATCCCGGGCAGTaGGGGCCTGTCGGAAATGTAAGCTGGGCTCAACTGCCTGCTAGA | + |
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Preference number: 5 (lower is better) Translates to: DNPCPQGARSCNPGQ*GPVGNVSWAQLPAR Trigger: TCTAGCAGGCAGTTGAGCCCAGCTTACATTTCCGACAGGCCCTCACTGCCCGGGATTGCAGCTGCGGGCTCCTTGAGGGCAGGGATTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000518232.1 ENST00000521073.6 ENST00000631938.1 ENST00000633884.1 |
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| CDS GCA 90 bp | TCTCCCATCCATTCTCTCTGCAGTCTGCTGCCTGGAGGCTTCATCTaGATGATGAAACCTCGGTCTGCACAACCCATTATCTTAACCCAG | + |
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Preference number: 5 (lower is better) Translates to: SPIHSLCSLLPGGFI*MMKPRSAQPIILTQ Trigger: CTGGGTTAAGATAATGGGTTGTGCAGACCGAGGTTTCATCATGCAGATGAAGCCTCCAGGCAGCAGACTGCAGAGAGAATGGATGGGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521073.6 |
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| CDS CCA 90 bp | CTGATAATAAACATCTCCCATCCATTCTCTCTGCAGTCTGCTGCCTaGAGGCTTCATCTGCATGATGAAACCTCGGTCTGCACAACCCAT | + |
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Preference number: 5 (lower is better) Translates to: LIINISHPFSLQSAA*RLHLHDETSVCTTH Trigger: ATGGGTTGTGCAGACCGAGGTTTCATCATGCAGATGAAGCCTCCAGGCAGCAGACTGCAGAGAGAATGGATGGGAGATGTTTATTATCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521073.6 |
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| CDS TCA 72 bp | TGCCCTCAAGGAGCCCGCAGCTGCAATCCCGGGCAGTaGGGGCCTGTCGGAAATGTAAGCTGGGCTCAACTG | + |
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Preference number: 6 (lower is better) Translates to: CPQGARSCNPGQ*GPVGNVSWAQL Trigger: CAGTTGAGCCCAGCTTACATTTCCGACAGGCCCTCACTGCCCGGGATTGCAGCTGCGGGCTCCTTGAGGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000518232.1 ENST00000521073.6 ENST00000631938.1 ENST00000633884.1 |
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| CDS GCA 72 bp | GAAGGATGCGTAGGAGTTTGCATCTGGAAGGGCATCTaGTGCAGCAGGAACTGTCGGGGCAGAAGTGGAGAT | + |
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Preference number: 6 (lower is better) Translates to: EGCVGVCIWKGI*CSRNCRGRSGD Trigger: ATCTCCACTTCTGCCCCGACAGTTCCTGCTGCAGCAGATGCCCTTCCAGATGCAAACTCCTACGCATCCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000518232.1 ENST00000521073.6 ENST00000631938.1 ENST00000633884.1 |
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| CDS TCA 72 bp | CTGCAGGTGGAAACTGCCCACGCATCTCTCAGCAGCTaGAAGGATGACTCCACAGTGGACGATTACTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: LQVETAHASLSS*KDDSTVDDYSG Trigger: ACCTGAGTAATCGTCCACTGTGGAGTCATCCTTTCAGCTGCTGAGAGATGCGTGGGCAGTTTCCACCTGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000518232.1 ENST00000521073.6 ENST00000631938.1 ENST00000633884.1 |
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| CDS GCA 72 bp | TTACTCAGGTGTAAAAAGGAGCAAAGCACTGGCACATaGGATAATGCGGAGGGACCTGAAGCCACCGTGCTA | + |
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Preference number: 6 (lower is better) Translates to: LLRCKKEQSTGT*DNAEGPEATVL Trigger: TAGCACGGTGGCTTCAGGTCCCTCCGCATTATCGCATGTGCCAGTGCTTTGCTCCTTTTTACACCTGAGTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000518232.1 ENST00000631938.1 |
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| CDS GCA 72 bp | CATTCTCTCTGCAGTCTGCTGCCTGGAGGCTTCATCTaGATGATGAAACCTCGGTCTGCACAACCCATTATC | + |
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Preference number: 6 (lower is better) Translates to: HSLCSLLPGGFI*MMKPRSAQPII Trigger: GATAATGGGTTGTGCAGACCGAGGTTTCATCATGCAGATGAAGCCTCCAGGCAGCAGACTGCAGAGAGAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521073.6 |
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| CDS GCA 72 bp | TTACTCAGGTGTAAAAAGGAGCAAAGCACTGGCACATaGGATAATGCGGAGGGACCTGAAGCCACCGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: LLRCKKEQSTGT*DNAEGPEATVL Trigger: AAGCACGGTGGCTTCAGGTCCCTCCGCATTATCGCATGTGCCAGTGCTTTGCTCCTTTTTACACCTGAGTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000521073.6 ENST00000633884.1 |
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| CDS TCA 72 bp | GGAAACTGCCCACGCATCTCTCAGCAGCTGAAAGGATaGCTCCACAGTGGACGATTACTCAGGTGTAAAAAG | + |
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Preference number: 6 (lower is better) Translates to: GNCPRISQQLKG*LHSGRLLRCKK Trigger: CTTTTTACACCTGAGTAATCGTCCACTGTGGAGTCATCCTTTCAGCTGCTGAGAGATGCGTGGGCAGTTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000518232.1 ENST00000521073.6 ENST00000631938.1 ENST00000633884.1 |
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| CDS TCA 72 bp | CCACTCAGAACTCTGCATCGTAGATCCCATGCGTCTTaGCACCTTCGTCTGCTAACATCTAGAAACCTTAGC | + |
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Preference number: 6 (lower is better) Translates to: PLRTLHRRSHAS*HLRLLTSRNLS Trigger: GCTAAGGTTTCTAGATGTTAGCAGACGAAGGTGTCAAGACGCATGGGATCTACGATGCAGAGTTCTGAGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000518232.1 ENST00000521073.6 ENST00000631938.1 ENST00000633884.1 |
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