RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01299 (Homo sapiens)

Ensembl gene IDs: ENSG00000254081

Ensembl transcript IDs: ENST00000520902.2

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp TCCTCCTCAGGAAGCCATATTTGCAGCACTTCAAAGCAAAGACTTTaGGCCATGCAGGCTTCAGTTCCCATCCTGATCCCTCCATGCGTG +
Preference number: 5 (lower is better)
Translates to: SSSGSHICSTSKQRL*AMQASVPILIPPCV
Trigger: CACGCATGGAGGGATCAGGATGGGAACTGAAGCCTGCATGGCTCAAAGTCTTTGCTTTGAAGTGCTGCAAATATGGCTTCCTGAGGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS GCA 90 bp TGGTGCTATAATCAATTTCCACGTTTCAGGACCAGGAAGGGACTCTaGCCCTATTCAGTCATTCAGCACATGTACTGGGTGCCATCCTTT +
Preference number: 5 (lower is better)
Translates to: WCYNQFPRFRTRKGL*PYSVIQHMYWVPSF
Trigger: AAAGGATGGCACCCAGTACATGTGCTGAATGACTGAATAGGGGCAGAGTCCCTTCCTGGTCCTGAAACGTGGAAATTGATTATAGCACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CCA 90 bp TTCTGTGGGAAGAGAAGGGTGTTCACAATGCACAATACACAATGGTaGCATTATCTCGACTTCACAGATGCTCTCCTCTGCAAAGGCTGG +
Preference number: 5 (lower is better)
Translates to: FCGKRRVFTMHNTQW*HYLDFTDALLCKGW
Trigger: CCAGCCTTTGCAGAGGAGAGCATCTGTGAAGTCGAGATAATGCCACCATTGTGTATTGTGCATTGTGAACACCCTTCTCTTCCCACAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS GCA 90 bp CAGAAGAAGGCACTGGGAAAAGGTATTGTCTGTGTAATACAAATTTaGAGTCCAGGGCAGTCCTCCTCAGGAAGCCATATTTGCAGCACT +
Preference number: 5 (lower is better)
Translates to: QKKALGKGIVCVIQI*SPGQSSSGSHICST
Trigger: AGTGCTGCAAATATGGCTTCCTGAGGAGGACTGCCCTGGACTGCAAATTTGTATTACACAGACAATACCTTTTCCCAGTGCCTTCTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CCA 90 bp ACCAGGAAGGGACTCTGCCCCTATTCAGTCATTCAGCACATGTACTaGGTGCCATCCTTTGATCAGACCTTTGGTTGTAATTTAGATGGT +
Preference number: 5 (lower is better)
Translates to: TRKGLCPYSVIQHMY*VPSFDQTFGCNLDG
Trigger: ACCATCTAAATTACAACCAAAGGTCTGATCAAAGGATGGCACCCAGTACATGTGCTGAATGACTGAATAGGGGCAGAGTCCCTTCCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CCA 90 bp AACTGTCTGCATCACCCATGCCCCCACAAACTTATTTATTCACACTaGACAAGGAAGCTTAGTAATCTACTAGACAGATCCAGAAAACAA +
Preference number: 5 (lower is better)
Translates to: NCLHHPCPHKLIYSH*TRKLSNLLDRSRKQ
Trigger: TTGTTTTCTGGATCTGTCTAGTAGATTACTAAGCTTCCTTGTCCAGTGTGAATAAATAAGTTTGTGGGGGCATGGGTGATGCAGACAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS TCA 90 bp ATGGGACTTTTTACCAAGCCCTACAACAATTCGGTAGAGTCTCACTaGAAGTTGCTATTCTGTGCATCTCCTTTTGTTAACATGACTATA +
Preference number: 5 (lower is better)
Translates to: MGLFTKPYNNSVESH*KLLFCASPFVNMTI
Trigger: TATAGTCATGTTAACAAAAGGAGATGCACAGAATAGCAACTTTCAGTGAGACTCTACCGAATTGTTGTAGGGCTTGGTAAAAAGTCCCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS GCA 90 bp TTCCCAGAATATGAATCAGTCAGCACAGCAATTGTGGAGAGAAATTaGAAGCACTTTATGCTAAGTCTACTCTCATACCCAGTAAAATAC +
Preference number: 5 (lower is better)
Translates to: FPEYESVSTAIVERN*KHFMLSLLSYPVKY
Trigger: GTATTTTACTGGGTATGAGAGTAGACTTAGCATAAAGTGCTTGCAATTTCTCTCCACAATTGCTGTGCTGACTGATTCATATTCTGGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS GCA 72 bp GCCATGCAGGCTTCAGTTCCCATCCTGATCCCTCCATaGGTGAGCTGCACAACTCAGGAAAGACACCGTATC +
Preference number: 6 (lower is better)
Translates to: AMQASVPILIPP*VSCTTQERHRI
Trigger: GATACGGTGTCTTTCCTGAGTTGTGCAGCTCACGCATGGAGGGATCAGGATGGGAACTGAAGCCTGCATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CCA 72 bp ATGCTCTCCTCTGCAAAGGCTGGGACCAGAGAAGGATaGGAAAGGGGCCATCCCTGGTCAGATTCTGAACAT +
Preference number: 6 (lower is better)
Translates to: MLSSAKAGTREG*ERGHPWSDSEH
Trigger: ATGTTCAGAATCTGACCAGGGATGGCCCCTTTCCCATCCTTCTCTGGTCCCAGCCTTTGCAGAGGAGAGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CAA 90 bp GTCCTCCTCAGGAAGCCATATTTGCAGCACTTCAAAGCAAAGACTTaGAGCCATGCAGGCTTCAGTTCCCATCCTGATCCCTCCATGCGT +
Preference number: 6 (lower is better)
Translates to: VLLRKPYLQHFKAKT*SHAGFSSHPDPSMR
Trigger: ACGCATGGAGGGATCAGGATGGGAACTGAAGCCTGCATGGCTCAAAGTCTTTGCTTTGAAGTGCTGCAAATATGGCTTCCTGAGGAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CAA 90 bp CATTCTATGTTCCCAGTAATTGCAGGCCAGGCAAACCAAGTGAGGTaGCTGAGCCATTGTAACCAACCTCTTTACCTCTCCACTGGCCTC +
Preference number: 6 (lower is better)
Translates to: HSMFPVIAGQANQVR*LSHCNQPLYLSTGL
Trigger: GAGGCCAGTGGAGAGGTAAAGAGGTTGGTTACAATGGCTCAGCAACCTCACTTGGTTTGCCTGGCCTGCAATTACTGGGAACATAGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CAA 72 bp TTCCCAGTAATTGCAGGCCAGGCAAACCAAGTGAGGTaGCTGAGCCATTGTAACCAACCTCTTTACCTCTCC +
Preference number: 6 (lower is better)
Translates to: FPVIAGQANQVR*LSHCNQPLYLS
Trigger: GGAGAGGTAAAGAGGTTGGTTACAATGGCTCAGCAACCTCACTTGGTTTGCCTGGCCTGCAATTACTGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS TCA 72 bp GGAAGCCATATTTGCAGCACTTCAAAGCAAAGACTTTaGGCCATGCAGGCTTCAGTTCCCATCCTGATCCCT +
Preference number: 6 (lower is better)
Translates to: GSHICSTSKQRL*AMQASVPILIP
Trigger: AGGGATCAGGATGGGAACTGAAGCCTGCATGGCTCAAAGTCTTTGCTTTGAAGTGCTGCAAATATGGCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS GCA 72 bp CAATACACAATGGTGGCATTATCTCGACTTCACAGATaGTCTCCTCTGCAAAGGCTGGGACCAGAGAAGGAT +
Preference number: 6 (lower is better)
Translates to: QYTMVALSRLHR*SPLQRLGPEKD
Trigger: ATCCTTCTCTGGTCCCAGCCTTTGCAGAGGAGAGCATCTGTGAAGTCGAGATAATGCCACCATTGTGTATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS GCA 72 bp AATCAATTTCCACGTTTCAGGACCAGGAAGGGACTCTaGCCCTATTCAGTCATTCAGCACATGTACTGGGTG +
Preference number: 6 (lower is better)
Translates to: NQFPRFRTRKGL*PYSVIQHMYWV
Trigger: CACCCAGTACATGTGCTGAATGACTGAATAGGGGCAGAGTCCCTTCCTGGTCCTGAAACGTGGAAATTGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CAA 72 bp AGGAAGCCATATTTGCAGCACTTCAAAGCAAAGACTTaGAGCCATGCAGGCTTCAGTTCCCATCCTGATCCC +
Preference number: 6 (lower is better)
Translates to: RKPYLQHFKAKT*SHAGFSSHPDP
Trigger: GGGATCAGGATGGGAACTGAAGCCTGCATGGCTCAAAGTCTTTGCTTTGAAGTGCTGCAAATATGGCTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CAA 90 bp AATACAAATTTGCAGTCCAGGGCAGTCCTCCTCAGGAAGCCATATTaGCAGCACTTCAAAGCAAAGACTTTGAGCCATGCAGGCTTCAGT +
Preference number: 6 (lower is better)
Translates to: NTNLQSRAVLLRKPY*QHFKAKTLSHAGFS
Trigger: ACTGAAGCCTGCATGGCTCAAAGTCTTTGCTTTGAAGTGCTGCAAATATGGCTTCCTGAGGAGGACTGCCCTGGACTGCAAATTTGTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CCA 72 bp GGGAAGAGAAGGGTGTTCACAATGCACAATACACAATaGTGGCATTATCTCGACTTCACAGATGCTCTCCTC +
Preference number: 6 (lower is better)
Translates to: GKRRVFTMHNTQ*WHYLDFTDALL
Trigger: GAGGAGAGCATCTGTGAAGTCGAGATAATGCCACCATTGTGTATTGTGCATTGTGAACACCCTTCTCTTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CCA 72 bp CATCACCCATGCCCCCACAAACTTATTTATTCACACTaGACAAGGAAGCTTAGTAATCTACTAGACAGATCC +
Preference number: 6 (lower is better)
Translates to: HHPCPHKLIYSH*TRKLSNLLDRS
Trigger: GGATCTGTCTAGTAGATTACTAAGCTTCCTTGTCCAGTGTGAATAAATAAGTTTGTGGGGGCATGGGTGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000520902.2
CDS CAA 90 bp GATGCATCATGGTTATTTTCCACACAGAGGATACCCCAGGACCTTTaGCTGATTTCTGTAGAAATAACACAATATGCGTTAATGTTTGCT +
Preference number: 6 (lower is better)
Translates to: DASWLFSTQRIPQDL*LISVEITQYALMFA
Trigger: AGCAAACATTAACGCATATTGTGTTATTTCTACAGAAATCAGCAAAAGGTCCTGGGGTATCCTCTGTGTGGAAAATAACCATGATGCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000520902.2