Pregenerated sensors for LINC01298 (Homo sapiens)
Ensembl gene IDs: ENSG00000253351Ensembl transcript IDs: ENST00000523171.1, ENST00000656091.1, ENST00000656181.1, ENST00000657586.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCCCTCCATGGCACACTGGAGCTGAGAACTCCTGCTTGACACGCTaGGTAAGCAGGCAGGGGACCACGACGGCATTTTTCTTCAACCTC | + |
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Preference number: 5 (lower is better) Translates to: GPPWHTGAENSCLTR*VSRQGTTTAFFFNL Trigger: GAGGTTGAAGAAAAATGCCGTCGTGGTCCCCTGCCTGCTTACTCAGCGTGTCAAGCAGGAGTTCTCAGCTCCAGTGTGCCATGGAGGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000523171.1 ENST00000656181.1 |
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| CDS TCA 90 bp | ATGGTATGTGACCTCTTCCCAAGGCCCTCCATGGCACACTGGAGCTaGGAACTCCTGCTTGACACGCTGAGTAAGCAGGCAGGGGACCAC | + |
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Preference number: 5 (lower is better) Translates to: MVCDLFPRPSMAHWS*ELLLDTLSKQAGDH Trigger: GTGGTCCCCTGCCTGCTTACTCAGCGTGTCAAGCAGGAGTTCTCAGCTCCAGTGTGCCATGGAGGGCCTTGGGAAGAGGTCACATACCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000523171.1 ENST00000656091.1 ENST00000656181.1 ENST00000657586.1 |
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| CDS GCA 90 bp | GGAGGGCAGCCCACTGACACCTTGACTTCTGCCCAGCATTTCCTCTaGCTTTCTGATCCAGGAGGTCAAGAAGGGTCCTCAGTGCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: GGQPTDTLTSAQHFL*LSDPGGQEGSSVLL Trigger: CAGGAGCACTGAGGACCCTTCTTGACCTCCTGGATCAGAAAGGCAGAGGAAATGCTGGGCAGAAGTCAAGGTGTCAGTGGGCTGCCCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000523171.1 ENST00000656091.1 |
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| CDS TCA 90 bp | GGCCCTCCATGGCACACTGGAGCTGAGAACTCCTGCTTGACACGCTaGGTAAGCAGGCAGGGGACCACGACGGCATTTTTCTTCAACCTT | + |
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Preference number: 5 (lower is better) Translates to: GPPWHTGAENSCLTR*VSRQGTTTAFFFNL Trigger: AAGGTTGAAGAAAAATGCCGTCGTGGTCCCCTGCCTGCTTACTCAGCGTGTCAAGCAGGAGTTCTCAGCTCCAGTGTGCCATGGAGGGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000656091.1 ENST00000657586.1 |
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| CDS TCA 90 bp | GGAGGGGGTCTTCTGGATGGCTCAGCCTGGCAGGCTGCTTCTGTTTaGGAATCCTGGGAGGCTCGCCCTTCCACATGTACTTTAAGCCTA | + |
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Preference number: 5 (lower is better) Translates to: GGGLLDGSAWQAASV*ESWEARPSTCTLSL Trigger: TAGGCTTAAAGTACATGTGGAAGGGCGAGCCTCCCAGGATTCTCAAACAGAAGCAGCCTGCCAGGCTGAGCCATCCAGAAGACCCCCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000656181.1 |
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| CDS CCA 90 bp | AGTATTGTGGCCACAAGCCAAGGTGTGCCATCAGCCACCAGCAATTaGAAGAGGCGAGGAATAGATTCTCCCCTGGAGCCTCCGGAGGGA | + |
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Preference number: 5 (lower is better) Translates to: SIVATSQGVPSATSN*KRRGIDSPLEPPEG Trigger: TCCCTCCGGAGGCTCCAGGGGAGAATCTATTCCTCGCCTCTTCCAATTGCTGGTGGCTGATGGCACACCTTGGCTTGTGGCCACAATACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523171.1 ENST00000656091.1 |
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| CDS TCA 90 bp | AAAGAACGAGTGGAAAGGGCTTTCCCCAGAGGGAGCTGGCAGCTCTaGAAGACGCTTATTGACGATGGGGGTGGATTCATGTTGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: KERVERAFPRGSWQL*KTLIDDGGGFMLSR Trigger: CCTGGACAACATGAATCCACCCCCATCGTCAATAAGCGTCTTTCAGAGCTGCCAGCTCCCTCTGGGGAAAGCCCTTTCCACTCGTTCTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000656181.1 ENST00000657586.1 |
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| CDS TCA 90 bp | TTCTTCAACCTTCTGGATGGCTCAGCCTGGCAGGCTGCTTCTGTTTaGGAATCCTGGGAGGCTCGCCCTTCCACATGTACTTTAAGCCTA | + |
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Preference number: 5 (lower is better) Translates to: FFNLLDGSAWQAASV*ESWEARPSTCTLSL Trigger: TAGGCTTAAAGTACATGTGGAAGGGCGAGCCTCCCAGGATTCTCAAACAGAAGCAGCCTGCCAGGCTGAGCCATCCAGAAGGTTGAAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656091.1 ENST00000657586.1 |
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| CDS TCA 72 bp | CAAGGGGAGGACTGCTTAGCCAACCCTGGTGAGATGTaGGCTAGGGAGAGGCTGCCGTTCTTGCCCCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: QGEDCLANPGEM*ARERLPFLPLP Trigger: GGGCAGGGGCAAGAACGGCAGCCTCTCCCTAGCTCACATCTCACCAGGGTTGGCTAAGCAGTCCTCCCCTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656091.1 ENST00000656181.1 ENST00000657586.1 |
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| CDS GCA 72 bp | GGGAGGGGGTCTTCTGGATGGCTCAGCCTGGCAGGCTaGTTCTGTTTGAGAATCCTGGGAGGCTCGCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: GRGSSGWLSLAG*FCLRILGGSPF Trigger: GAAGGGCGAGCCTCCCAGGATTCTCAAACAGAAGCAGCCTGCCAGGCTGAGCCATCCAGAAGACCCCCTCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000656181.1 |
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| CDS CAA 90 bp | GATTCTCCCCTGGAGCCTCCGGAGGGAGGGCAGCCCACTGACACCTaGACTTCTGCCCAGCATTTCCTCTGCCTTTCTGATCCAGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: DSPLEPPEGGQPTDT*TSAQHFLCLSDPGG Trigger: ACCTCCTGGATCAGAAAGGCAGAGGAAATGCTGGGCAGAAGTCAAGGTGTCAGTGGGCTGCCCTCCCTCCGGAGGCTCCAGGGGAGAATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523171.1 ENST00000656091.1 |
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| CDS TCA 72 bp | TGGAGCCTCCGGAGGGAGGGCAGCCCACTGACACCTTaGCTTCTGCCCAGCATTTCCTCTGCCTTTCTGATC | + |
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Preference number: 6 (lower is better) Translates to: WSLRREGSPLTP*LLPSISSAFLI Trigger: GATCAGAAAGGCAGAGGAAATGCTGGGCAGAAGTCAAGGTGTCAGTGGGCTGCCCTCCCTCCGGAGGCTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000523171.1 ENST00000656091.1 |
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| CDS CAA 72 bp | CTGGAGCCTCCGGAGGGAGGGCAGCCCACTGACACCTaGACTTCTGCCCAGCATTTCCTCTGCCTTTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: LEPPEGGQPTDT*TSAQHFLCLSD Trigger: ATCAGAAAGGCAGAGGAAATGCTGGGCAGAAGTCAAGGTGTCAGTGGGCTGCCCTCCCTCCGGAGGCTCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000523171.1 ENST00000656091.1 |
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| CDS CAA 90 bp | CTGGGAGGCTCGCCCTTCCACATGTACTTTAAGCCTAGAGAAGTGTaGGGAGCTGTCCTGCCACTCGTGGGGCAAGGGGAGGACTGCTTA | + |
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Preference number: 6 (lower is better) Translates to: LGGSPFHMYFKPREV*GAVLPLVGQGEDCL Trigger: TAAGCAGTCCTCCCCTTGCCCCACGAGTGGCAGGACAGCTCCCAACACTTCTCTAGGCTTAAAGTACATGTGGAAGGGCGAGCCTCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656091.1 ENST00000656181.1 ENST00000657586.1 |
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| CDS TCA 72 bp | GACCTCTTCCCAAGGCCCTCCATGGCACACTGGAGCTaGGAACTCCTGCTTGACACGCTGAGTAAGCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: DLFPRPSMAHWS*ELLLDTLSKQA Trigger: TGCCTGCTTACTCAGCGTGTCAAGCAGGAGTTCTCAGCTCCAGTGTGCCATGGAGGGCCTTGGGAAGAGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000523171.1 ENST00000656091.1 ENST00000656181.1 ENST00000657586.1 |
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| CDS CCA 72 bp | CGCCCTTCCACATGTACTTTAAGCCTAGAGAAGTGTTaGGAGCTGTCCTGCCACTCGTGGGGCAAGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: RPSTCTLSLEKC*ELSCHSWGKGR Trigger: CCTCCCCTTGCCCCACGAGTGGCAGGACAGCTCCCAACACTTCTCTAGGCTTAAAGTACATGTGGAAGGGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656091.1 ENST00000656181.1 ENST00000657586.1 |
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| CDS CAA 72 bp | GGCCACAAGCCAAGGTGTGCCATCAGCCACCAGCAATaGGAAGAGGCGAGGAATAGATTCTCCCCTGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: GHKPRCAISHQQ*EEARNRFSPGA Trigger: GGCTCCAGGGGAGAATCTATTCCTCGCCTCTTCCAATTGCTGGTGGCTGATGGCACACCTTGGCTTGTGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000523171.1 ENST00000656091.1 |
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| CDS TCA 72 bp | TGGCACACTGGAGCTGAGAACTCCTGCTTGACACGCTaGGTAAGCAGGCAGGGGACCACGACGGCATTTTTC | + |
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Preference number: 6 (lower is better) Translates to: WHTGAENSCLTR*VSRQGTTTAFF Trigger: GAAAAATGCCGTCGTGGTCCCCTGCCTGCTTACTCAGCGTGTCAAGCAGGAGTTCTCAGCTCCAGTGTGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000523171.1 ENST00000656091.1 ENST00000656181.1 ENST00000657586.1 |
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| CDS CAA 72 bp | TCGCCCTTCCACATGTACTTTAAGCCTAGAGAAGTGTaGGGAGCTGTCCTGCCACTCGTGGGGCAAGGGGAG | + |
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Preference number: 6 (lower is better) Translates to: SPFHMYFKPREV*GAVLPLVGQGE Trigger: CTCCCCTTGCCCCACGAGTGGCAGGACAGCTCCCAACACTTCTCTAGGCTTAAAGTACATGTGGAAGGGCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656091.1 ENST00000656181.1 ENST00000657586.1 |
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| CDS CAA 90 bp | AAAGGGCTTTCCCCAGAGGGAGCTGGCAGCTCTGAAAGACGCTTATaGACGATGGGGGTGGATTCATGTTGTCCAGGTACTGAGCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: KGLSPEGAGSSERRL*TMGVDSCCPGTELG Trigger: CCCCAGCTCAGTACCTGGACAACATGAATCCACCCCCATCGTCAATAAGCGTCTTTCAGAGCTGCCAGCTCCCTCTGGGGAAAGCCCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000656181.1 ENST00000657586.1 |
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| CDS TCA 72 bp | CCCCAGAGGGAGCTGGCAGCTCTGAAAGACGCTTATTaGCGATGGGGGTGGATTCATGTTGTCCAGGTACTG | + |
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Preference number: 6 (lower is better) Translates to: PQRELAALKDAY*RWGWIHVVQVL Trigger: CAGTACCTGGACAACATGAATCCACCCCCATCGTCAATAAGCGTCTTTCAGAGCTGCCAGCTCCCTCTGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000656181.1 ENST00000657586.1 |
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| CDS GCA 72 bp | TTTCTTCAACCTTCTGGATGGCTCAGCCTGGCAGGCTaGTTCTGTTTGAGAATCCTGGGAGGCTCGCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: FLQPSGWLSLAG*FCLRILGGSPF Trigger: GAAGGGCGAGCCTCCCAGGATTCTCAAACAGAAGCAGCCTGCCAGGCTGAGCCATCCAGAAGGTTGAAGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656091.1 ENST00000657586.1 |
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| CDS CAA 72 bp | GCAGATGTGAGGAGGGAGCTAGCCCAAGGTCAGGTGTaGGCTCAAGTTTCTCCTGTAGTCAACACAAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: ADVRRELAQGQV*AQVSPVVNTRA Trigger: TGCCCTTGTGTTGACTACAGGAGAAACTTGAGCCAACACCTGACCTTGGGCTAGCTCCCTCCTCACATCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656181.1 ENST00000657586.1 |
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| CDS CAA 72 bp | TCCCCAGAGGGAGCTGGCAGCTCTGAAAGACGCTTATaGACGATGGGGGTGGATTCATGTTGTCCAGGTACT | + |
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Preference number: 6 (lower is better) Translates to: SPEGAGSSERRL*TMGVDSCCPGT Trigger: AGTACCTGGACAACATGAATCCACCCCCATCGTCAATAAGCGTCTTTCAGAGCTGCCAGCTCCCTCTGGGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000656181.1 ENST00000657586.1 |
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| CDS GCA 72 bp | GCAGAAATTGGAGTATTGTGGCCACAAGCCAAGGTGTaGCATCAGCCACCAGCAATTGGAAGAGGCGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: AEIGVLWPQAKV*HQPPAIGRGEE Trigger: TTCCTCGCCTCTTCCAATTGCTGGTGGCTGATGGCACACCTTGGCTTGTGGCCACAATACTCCAATTTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000523171.1 ENST00000656091.1 |
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| CDS CAA 90 bp | ATCTCCAAAGCAGATGTGAGGAGGGAGCTAGCCCAAGGTCAGGTGTaGGCTCAAGTTTCTCCTGTAGTCAACACAAGGGCAGTGGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: ISKADVRRELAQGQV*AQVSPVVNTRAVEE Trigger: TTCCTCCACTGCCCTTGTGTTGACTACAGGAGAAACTTGAGCCAACACCTGACCTTGGGCTAGCTCCCTCCTCACATCTGCTTTGGAGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656181.1 ENST00000657586.1 |
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| CDS CAA 90 bp | GTCACACCTGCTGGGAATACAGTTATAATTAGACCAGAATCAGCTTaGGGCCTCAAAGAACGAGTGGAAAGGGCTTTCCCCAGAGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: VTPAGNTVIIRPESA*GLKERVERAFPRGS Trigger: GCTCCCTCTGGGGAAAGCCCTTTCCACTCGTTCTTTGAGGCCCAAAGCTGATTCTGGTCTAATTATAACTGTATTCCCAGCAGGTGTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656181.1 ENST00000657586.1 |
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| CDS CAA 72 bp | GCTGGGAATACAGTTATAATTAGACCAGAATCAGCTTaGGGCCTCAAAGAACGAGTGGAAAGGGCTTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: AGNTVIIRPESA*GLKERVERAFP Trigger: GGGGAAAGCCCTTTCCACTCGTTCTTTGAGGCCCAAAGCTGATTCTGGTCTAATTATAACTGTATTCCCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656181.1 ENST00000657586.1 |
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| CDS TCA 72 bp | AGAAATTTGATGCACACAGAAGAAATGAAGTCAGTGTaGCCATGGAGGCAGAAATTGGAGTATTGTGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: RNLMHTEEMKSV*PWRQKLEYCGH Trigger: GTGGCCACAATACTCCAATTTCTGCCTCCATGGTCACACTGACTTCATTTCTTCTGTGTGCATCAAATTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000523171.1 ENST00000656091.1 |
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